Ecological aspects of endophyte-based biocontrol of forest diseases

Advances in Endophytic Research

Volumn , Issue , 2014, Pages 321-333

  Witzell, Johanna ^a   Martín, Juan A ^b   Blumenstein, Kathrin ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84930806236     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-81-322-1575-2_17     Document Type: Chapter

References (112)

1. Albrectsen BR, Witzell J (2012) Disentangling functions of fungal endophytes in forest trees. In: Paz Silva A, Sol M (eds) Fungi: Types, environmental impact and role in disease. Nova, Hauppauge, pp 235-246
2. Albrectsen BR, Bjorken L, Varad A et al (2010) Endophytic fungi in European aspen ( Populus tremula ) leaves-diversity, detection, and a suggested correlation with herbivory resistance. Fungal Divers 41: 17-28
3. Amend AS, Seifert KA, Bruns TD (2010) Quantifying microbial communities with 454 pyrosequencing: does read abundance count? Mol Ecol 19:5555-5565
4. Anderson PK, Cunningham AA, Patel NG et al (2004) Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. TREE 19:535-543
5. Arnold AE (2007) Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers. Fungal Biol Rev 21:51-66
6. Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots? Ecology 88:541-549
7. Arnold AE, Maynard Z, Gilbert GS et al (2000) Are tropical fungal endophytes hyperdiverse? Ecol Lett 3:267-274
8. Arnold AE, Mejía LC, Kyllo D et al (2003) Fungal endophytes limit pathogen damage in a tropical tree. PNAS 100:15649-15654
9. Bale JS, van Lenteren JC, Bigler F (2008) Biological control and sustainable food production. Philos Trans R Soc B 36:761-776
10. Baum S, Sieber TN, Schwarze FWMR, Fink C (2003) Latent infections of Fomes fomentarius in the xylem of European beech ( Fagus sylvatica ). Mycol Prog 2:141-148
11. Bazoche P, Bunte F, Combris P et al (2012) Willingness to pay for pesticides' reduction in E.U.: nothing but organic? ALISS working paper 2012-01. http:// www7.paris.inra.fr/aliss/publications-working- papers/working-papers/aliss-working-papers. Accessed 5 Mar 2013
12. Becher PG, Flick G, Rozpdowska E et al (2012) Yeast, not fruit volatiles mediate Drosophila melanogaster attraction, oviposition and development. Funct Ecol 26:822-828
13. Bernhold A, Witzell J, Hanson P (2008) Effect of slash removal on Gremmeniella abietina incidence on Pinus sylvestris after clear-cutting in northern Sweden. Scand J For Res 21:489-495
14. Bettucci L, Alonso R (1997) A comparative study of fungal populations in healthy and symptomatic twigs of Eucalyptus grandis in Uruguay. Mycol Res 101:1060-1064
15. Blodgett JT, Eyles A, Bonello P (2007) Organ-dependent induction of systemic resistance and systemic susceptibility in Pinus nigra inoculated with Sphaeropsis sapinea and Diplodia scrobiculata. Tree Physiol 27:511-517
16. Boller T, Felix G (2009) A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annu Rev Plant Biol 60:379-406
17. Borglin S, Joyner D, DeAngelis KM et al (2012) Application of phenotypic microarrays to environmental microbiology. Curr Opin Biotechnol 23:41-48
18. Brasier CM (2001) Rapid evolution of introduced plant pathogens via interspecifi c hybridization. Bioscience 51:123-133
19. Brasier CM, Scott JK (1994) European oak declines and global warming: A theoretical assessment with special reference to the activity of Phytophthora cinnamomi. EPPO Bull 24:221-232
20. Brasier CM, Cooke DE, Duncan JM (1999) Origin of a new Phytophthora pathogen through interspecifi c hybridization. Proc Natl Acad Sci U S A 96:5878-5883
21. Bruls T, Weissenbach J (2011) The human metagenome: our other genome? Hum Mol Genet 20:R142-R148
22. Bush LP, Wilkinson HH, Schardl CL (1997) Bioprotective alkaloids of grass-fungal endophyte symbioses. Plant Physiol 114:1-7
23. Carroll GC (1988) Fungal endophytes in stems and leaves: from latent pathogen to mutualistic symbiont. Ecology 69:2-9
24. Carroll G (1995) Forest endophytes: pattern and process. Can J Bot 73:1316-1324
25. Cho I, Blaser MJ (2012) The human microbiome: At the interface of health and disease. Nat Rev Genet 13:260-270
26. Clay K (1988) Fungal endophytes of grasses: A defensive mutualism between plants and fungi. Ecology 69:10-16
27. Clay K (1996) Interactions among fungal endophytes, grasses and herbivores. Res Popul Ecol 38:191-201
28. Clay K (2004) Fungi and the food of the gods. Nature 427:401-402
29. Clay K, Holah J (1999) Fungal endophyte symbiosis and plant diversity in successional fi elds. Science 285:1742-1745
30. Clay K, Schardl C (2002) Evolutionary origins and ecological consequences of endophyte symbiosis with grasses. Am Nat 160(Suppl 4):S99-S127
31. Compant S, Duffy B, Nowak J et al (2005) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71:4951-4959
32. Dale VH, Joyce LA, McNulty S et al (2001) Climate change and forest disturbances. Bioscience 51:725-734
33. Danti R, Sieber TN, Sanguineti G (2002) Endophytic mycobiota in bark of European beech ( Fagus sylvatica ) in the Apennines. Mycol Res 106:1343-1348
34. Dvorák M, Palovcíková D, Jankovský L (2006) The occurrence of endophytic fungus Phomopsis oblonga on elms in the area of southern Bohemia. J For Sci 52:531-535
35. Edenius L, Mikusinski G, Witzell J, Bergh J (2012) Effects of repeated fertilization of young Norway spruce on phenolics and arthropods: implications for insectivorous birds food resources. For Ecol Manage 277:38-45
36. Eilenberg J, Hajek A, Lomer C (2001) Suggestions for unifying the terminology in biological control. BioControl 46:387-400
37. Eyberger AL, Condapati R, Porter JRJ (2006) Endophyte fungal isolates from Podophyllum peltatum produce podophyllotoxin. J Nat Prod 69:1121-1124
38. Faeth SH, Fagan WF (2002) Fungal endophytes: common host plant symbionts but uncommon mutualists. Integr Comp Biol 42:360-368
39. Fisher MC, Henk DA, Briggs CJ et al (2012) Emerging fungal threats to animal, plant and ecosystem health. Nature 484:186-194
40. Fodor E (2011) Ecological niche of plant pathogens. Ann For Res 54:3-21
41. Foley JA, DeFries R, Asner GP et al (2005) Global consequences of land use. Science 309:570-574
42. Ganley RJ, Newcombe G (2006) Fungal endophytes in seeds and needles of Pinus monticola. Mycol Res 110:318-327
43. Ganley RJ, Sniezko RA, Newcombe G (2008) Endophytemediated resistance against white pine blister rust in Pinus monticola. For Ecol Manage 255:2751-2760
44. Gao F, Dai C, Liu X (2010) Mechanisms of fungal endophytes in plant protection against pathogens. Afr J Microbiol Res 4:1346-1351
45. Garland JL (2006) Analysis and interpretation of community-level physiological profi les in microbial ecology. FEMS Microbiol Ecol 24:289-300
46. Gennaro M, Gonthier P, Nicolotti G (2003) Fungal endophytic communities in healthy and declining Quercus robur L. And Q. cerris L. Trees in northern Italy. J Phytopathol 151:529-534
47. Gerson EA, Kelsey RG (2002) Piperidine alkaloids in sitka spruce with varying levels of resistance to white pine weevil (Coleoptera: Curculionidae). J Econ Entomol 95:608-613
48. Hajek AE (1997) Fungal and viral epizootics in gypsy moth (Lepidoptera: Lymantriidae) populations in central New York. Biol Control 10:58-68
49. Hajek AE, Elkinton JS, Humber RA (1997) Entomopathogenic hyphomycetes associated with gypsy moth (Lepidoptera: Lymantriidae) larvae. Mycologia 89:825-829
50. Hamady M, Walker JJ, Harris JK et al (2008) Errorcorrecting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Method 5:235-237
51. Harfouche A, Meilan R, Altman A (2011) Tree genetic engineering and applications to sustainable forestry and biomass production. Trends Biotechnol 29:9-17
52. Helander M, Wäli P, Kuuluvainen T, Saikkonen K (2006) Birch leaf endophytes in managed and natural boreal forests. Can J For Res 36:3239-3245
53. Holdenrieder O, Greig BJW (1998) Biological methods of control. In: Woodward S, Stenlid J, Karjalainen R, Hutterman A (eds) Heterobasidion annosum : biology, ecology, impact and control. CAB International, Wallingford, pp 235-259
54. Hornby JM, Jacobitz-Kizzier SM, McNeel DJ (2004) Inoculum size effect in dimorphic fungi: extracellular control of yeast-mycelium dimorphism in Ceratocystis ulmi. Appl Environ Microbiol 70:1356-1359
55. Hubbes M (2004) Induced resistance for the control of Dutch elm disease. Invest Agrar Sist Recur For 13:185-196
56. Jensen AM, Lof M, Witzell J (2012) Effects of competition and indirect facilitation by shrubs on Quercus robur saplings. Plant Ecol 231:535-543
57. Jumpponen A, Jones KL (2010) Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments. New Phytol 186:496-513
58. Keane RM, Crawley MJ (2002) Exotic plant invasions and the enemy release hypothesis. TREE 17:164-170
59. Kurz WA, Dymond CC, Stinson G et al (2008) Mountain pine beetle and forest carbon feedback to climate change. Nature 452:987-990
60. Kusari S, Lamshoft M, Zuhlke S, Spiteller M (2008) An endophytic fungus from Hypericum perforatum that produces hypericin. J Nat Prod 71:159-162
61. Lacey LA, Frutos R, Kaya HK, Vail P (2001) Insect pathogens as biological control agents: do they have a future? Biol Control 21:230-248
62. Lee S, Kim JJ, Breuil C (2006) Diversity of fungi associated with the mountain pine beetle, Dendroctonus ponderosae and infested lodgepole pines in British Columbia. Fungal Divers 22:91-105
63. Lehtonen P, Helander M, Saikkonen K (2005) Are endophyte-mediated effects on herbivores conditional on soil nutrients? Oecologia 142:38-45
64. Louda SM, Pemberton RW, Johnson MT, Follett PA (2003) Nontarget effects-the Achilles' heel of biological control? Retrospective analyses to reduce risk associated with biocontrol introductions. Annu Rev Entomol 48:365-396
65. Mardis ER (2011) A decade's perspective on DNA sequencing technology. Nature 470:198-203
66. Margulies M, Egholm M, Altman WE et al (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380
67. Martín J, Witzell J, Blumenstein K et al (2013) Resistance to Dutch elm disease reduces xylem endophytic fungi presence in elms ( Ulmus spp.). PLoS One 8(2):e56987
68. Martín-García J, Espiga E, Pando V, Diez JJ (2011) Factors infl uencing endophytic communities in poplar plantations. Silva Fenn 45:169-180
69. Mejía LC, Rojas EI, Maynard Z et al (2008) Endophytic fungi as biocontrol agents of Theobroma cacao pathogens. Biol Control 46:4-14
70. Millar CI, Stephenson NL, Stephens SL (2007) Climate change and forests of the future: managing in the face of uncertainty. Ecol Appl 17:2145-2151
71. Morrison WE, Hay ME (2011) Herbivore preference for native vs. exotic plants: generalist herbivores from multiple continents prefer exotic plants that are evolutionarily naïve. PLoS One 6(3):e17227
72. Müller-Schärer H, Schaffner U, Steinger T (2004) Evolution in invasive plants: implications for biological control. TREE 19:417-422
73. Newcombe G (2011) Endophytes in forest management: four challenges. In: Pirttilä AM, Frank AC (eds) Endophytes of forest trees: biology and applications, Forestry sciences 80. Springer, Berlin/Heidelberg/ New York, pp 251-262
74. Nilsson HR, Tedersoo L, Lindahl BD et al (2011) Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytol 191:314-318
75. Pal KK, McSpadden Gardener B (2006) Biological control of plant pathogens. Plant Health Instr. Available via APSnet. http://www.apsnet.org/edcenter/advanced/ topics/Documents/PHI-BiologicalControl.pdf. Accessed 27 Feb 2013
76. Pearson DE, Callaway RM (2005) Indirect nontarget effects of host-specifi c biological control agents: implications for biological control. Biol Control 35:288-298
77. Petrini O (1991) Fungal endophytes of leaves. In: Andrew JH, Hirano SS (eds) Microbial ecology of leaves. Springer, Berlin, pp 179-197
78. Petrini O, Fisher PJ (1990) Occurrence of fungal endophytes in twigs of Salix fragilis and Quercus robur. Mycol Res 94:1077-1080
79. Pratt JE, Johansson M, Hütterman A (1998) Chemical control of Heterobasidion annosum. In: Woodward S, Stenlid J, Karjalainen R, Hutterman A (eds) Heterobasidion annosum : biology, ecology, impact and control. CAB International, Wallingford, pp 259-282
80. Qin J, Li RQ, Raes J et al (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464:59-65
81. Ragazzi A, Moricca S, Capretti P et al (2003) Differences in composition of endophytic mycobiota in twigs and leaves of healthy and declining Quercus species in Italy. For Pathol 33:31-38
82. Rodriguez RJ, Redman RS (1997) Fungal lifestyles and ecosystem dynamics: biological aspects of plant pathogens, plant endophytes, and saprophytes. Adv Bot Res 24:169-193
83. Rodriguez RJ, White JF, Arnold AE, Redman RS (2009) Fungal endophytes: diversity and functional roles. New Phytol 182:214-220
84. Rodríguez J, Elissetche JP, Valenzuela S (2011) Tree endophytes and wood biodegradation. In: Pirttilä AM, Frank AC (eds) Endophytes of forest trees: biology and applications, Forestry sciences 80. Springer, Berlin/Heidelberg/New York, pp 81-93
85. Saikkonen K (2007) Forest structure and fungal endophytes. Fungal Biol Rev 21:67-74
86. Saikkonen K, Faeth SH, Helander M, Sullivan TJ (1998) Fungal endophytes: A continuum of interaction with host plants. Annu Rev Ecol Syst 29:319-343
87. Saikkonen K, Ion D, Gyllenberg M (2002) The persistence of vertically transmitted fungi in grass metapopulations. Proc R Soc B Biol Sci 269:1397-1403
88. Saikkonen K, Wäli P, Helander M, Faeth SH (2004) Evolution of endophyte-plant symbioses. Trends Plant Sci 9:275-280
89. Santamaría O, Diez JJ (2005) Fungi in leaves, twigs and stem bark of Populus tremula from northern Spain. For Pathol 35:95-104
90. Santini A, Ghelardini L, De Pace C et al (2013) Biogeographical patterns and determinants of invasion by forest pathogens in Europe. New Phytol 197:238-250
91. Schiebe C, Hammerbacher A, Birgersson G et al (2012) Inducibility of chemical defences in Norway spruce bark is correlated with unsuccessful mass attacks by the spruce bark beetle. Oecologia 170:183-198
92. Schroter D, Cramer W, Leemans R et al (2005) Ecosystem service supply and vulnerability to global change in Europe. Science 310:1333-1337
93. Schulz B, Boyle C (2006) What are endophytes? In: Schulz B, Boyle C, Sieber TN (eds) Microbial root endophytes, Soil biology 9. Springer, Heidelberg, pp 1-13
94. Schwarze FWMR, Engels J, Matcheck C (2000) Fungal strategies of wood decay in trees. Springer, Berlin, 185pp
95. Seifert K (2009) Progress towards DNA barcoding of fungi. Mol Ecol Res 9(Suppl 1):83-89
96. Shigo AL (1984) Compartmentalization: A conceptual framework for understanding how trees grow and defend themselves. Annu Rev Phytopathol 22:189-214
97. Sieber TN (2007) Endophytic fungi in forest trees: Are they mutualists? Fungal Biol Rev 21:75-89
98. Smith J (2002) Afforestation and reforestation in the clean development mechanism of the Kyoto protocol: implications for forests and forest people. Int J Global Environ Issue 2:322-343
99. Solla A, Gil L (2003) Evaluating Verticillium dahliae for biological control of Ophiostoma novo-ulmi in Ulmus minor. Plant Pathol 52:579-585
100. Stierle A, Strobel G, Stierle D (1993) Taxol and taxane production by Taxomyces andreanae , an endophytic fungus of Pacifi c yew. Science 260:214-216
101. Strauss SH, Brunner AM, Busov VB et al (2004) Ten lessons from 15 years of transgenic Populus research. Forestry 77:457-465
102. Strobel G, Daisy B (2003) Bioprospecting for microbial endophytes and their natural products. Microbiol Mol Biol Rev 67:491-502
103. Sturrock RN, Frankel SJ, Brown AV et al (2011) Climate change and forest diseases. Plant Pathol 60:133-149
104. Sun X, Guo LD, Hyde KD (2011) Community composition of endophytic fungi in Acer truncatum and their role in decomposition. Fungal Divers 47:85-95
105. Tscharntke T, Bommarco R, Clough Y et al (2007) Conservation biological control and enemy diversity on a landscape scale. Biol Control 43:294-309
106. Unterseher M (2011) Diversity of fungal endophytes in temperate forest trees. In: Pirttilä AM, Frank CA (eds) Endophytes of forest trees: biology and applications. Springer, Heidelberg, pp 31-46
107. Verma VC, Lobkovsky E, Gange AC et al (2011) Piperine production by endophytic fungus Periconia sp. isolated from Piper longum L. J Antibiot 64: 427-431
108. Waage JK, Greathead DJ (1988) Biological control: challenges and opportunities. Philos Trans R Soc Lond B 318:111-128
109. Webber JF (1981) A natural biological-control of Dutch elm disease. Nature 292:449-451
110. White JF, Torres MS (2010) Is plant endophyte-mediated defensive mutualism the result of oxidative stress protection? Physiol Plant 138:440-446
111. Witzell J, Martín JA (2008) Phenolic metabolites in the resistance of northern forest trees to pathogens-past experiences and future prospects. Can J For Res 38:2711-2727
112. Zhao J, Shan T, Mou Y, Zhou L (2011) Plant-derived bioactive compounds produced by endophytic fungi. Mini Rev Med Chem 11:159-168