Expanding the chemical space for natural products by Aspergillus-Streptomyces co-cultivation and biotransformation

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Wu, Changsheng ^a   Zacchetti, Boris ^a   Ram, Arthur F J ^a   Van Wezel, Gilles P ^a   Claessen, Dennis ^a   Choi, Young Hae ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PRODUCT;

ASPERGILLUS; BIOTRANSFORMATION; CARBON NUCLEAR MAGNETIC RESONANCE; CHEMISTRY; METABOLISM; PROTON NUCLEAR MAGNETIC RESONANCE; STREPTOMYCES;

ASPERGILLUS; BIOLOGICAL PRODUCTS; BIOTRANSFORMATION; CARBON-13 MAGNETIC RESONANCE SPECTROSCOPY; PROTON MAGNETIC RESONANCE SPECTROSCOPY; STREPTOMYCES;

EID: 84930651422     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep10868     Document Type: Article

References (49)

1. Harvey A. L., Edrada-Ebel R. & Quinn R. J. The re-emergence of natural products for drug discovery in the genomics era. Nat Rev Drug Discov 14, 111-129 (2015
2. Hopwood D. A. Streptomyces in nature and medicine: the antibiotic makers. (Oxford University Press, New York; 2007
3. Newman D. J. & Cragg G. M. Natural products as sources of new drugs over the 30 years from 1981 to 2010. J Nat Prod 75, 311-335 (2012
4. Pimm S. L., Russell G. J., Gittleman J. L. & Brooks T. M. The future of biodiversity. Science 269, 347-350 (1995
5. Payne D. J., Gwynn M. N., Holmes D. J. & Pompliano D. L. Drugs for bad bugs: confronting the challenges of antibacterial discovery. Nat Rev Drug Discov 6, 29-40 (2007
6. Bergmann S., et al. Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans. Nat Chem Biol 3, 213-217 (2007
7. Pel H. J., et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 25, 221-231 (2007
8. van den Berg M. A., et al. Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum. Nat Biotechnol 26, 1161-1168 (2008
9. Bentley S. D., et al. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417, 141-147 (2002
10. Cruz-Morales P., et al. The genome sequence of Streptomyces lividans 66 reveals a novel tRNA-dependent peptide biosynthetic system within a metal-related genomic island. Genome Biol Evol 5, 1165-1175 (2013
11. Ohnishi Y., et al. Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350. J Bacteriol 190, 4050-4060 (2008
12. van Wezel G. P., McKenzie N. L. & Nodwell J. R. Chapter 5. Applying the genetics of secondary metabolism in model actinomycetes to the discovery of new antibiotics. Methods Enzymol 458, 117-141 (2009
13. Zhu H., Sandiford S. K. & van Wezel G. P. Triggers and cues that activate antibiotic production by actinomycetes. J Ind Microbiol Biotechnol 41, 371-386 (2014
14. Schumann J. & Hertweck C. Advances in cloning, functional analysis and heterologous expression of fungal polyketide synthase genes. J Biotechnol 124, 690-703 (2006
15. Ochi K., Tanaka Y. & Tojo S. Activating the expression of bacterial cryptic genes by rpoB mutations in RNA polymerase or by rare earth elements. J Ind Microbiol Biotechnol 41, 403-414 (2014
16. Thaker M. N., et al. Identifying producers of antibacterial compounds by screening for antibiotic resistance. Nat Biotechnol 31, 922-927 (2013
17. Craney A., Ozimok C., Pimentel-Elardo S. M., Capretta A. & Nodwell J. R. Chemical perturbation of secondary metabolism demonstrates important links to primary metabolism. Chem Biol 19, 1020-1027 (2012
18. Zhu H., et al. Eliciting antibiotics active against the ESKAPE pathogens in a collection of actinomycetes isolated from mountain soils. Microbiology 160, 1714-1725 (2014
19. Ling L. L., et al. A new antibiotic kills pathogens without detectable resistance. Nature 517, 455-459 (2015
20. Wilson M. C., et al. An environmental bacterial taxon with a large and distinct metabolic repertoire. Nature 506, 58-62 (2014
21. Angell S., Bench B. J., Williams H. & Watanabe C. M. Pyocyanin isolated from a marine microbial population: synergistic production between two distinct bacterial species and mode of action. Chem Biol 13, 1349-1359 (2006
22. Oh D. C., Kauffman C. A., Jensen P. R. & Fenical W. Induced production of emericellamides A and B from the marine-derived fungus Emericella sp. in competing co-culture. J Nat Prod 70, 515-520 (2007
23. Claessen D., Rozen D. E., Kuipers O. P., Sogaard-Andersen L. & van Wezel G. P. Bacterial solutions to multicellularity: a tale of biofilms, filaments and fruiting bodies. Nat Rev Microbiol 12, 115-124 (2014
24. Benoit I., et al. Bacillus subtilis attachment to Aspergillus niger hyphae results in mutually altered metabolism. Environ Microbiol (2014), in press
25. Konig C. C., et al. Bacterium induces cryptic meroterpenoid pathway in the pathogenic fungus Aspergillus fumigatus. Chembiochem 14, 938-942 (2013
26. Kim H. K., Choi Y. H. & Verpoorte R. NMR-based metabolomic analysis of plants. Nat Protoc 5, 536-549 (2010
27. Wu C. S., Kim H. K., van Wezel G. P. & Choi Y. K. Metabolomics in the natural products field - a gateway to novel antibiotics. Drug Disc Today Technol. In press (2015
28. Vinck A., et al. Hyphal differentiation in the exploring mycelium of Aspergillus niger. Mol Microbiol 58, 693-699 (2005
29. Bertrand S., et al. Metabolite induction via microorganism co-culture: a potential way to enhance chemical diversity for drug discovery. Biotechnol Adv 32, 1180-1204 (2014
30. Wright L. F. & Hopwood D. A. Actinorhodin is a chromosomally-determined antibiotic in Streptomyces coelicolor A3(2). J Gen Microbiol 96, 289-297 (1976
31. Rudd B. A. & Hopwood D. A. A pigmented mycelial antibiotic in Streptomyces coelicolor: control by a chromosomal gene cluster. J Gen Microbiol 119, 333-340 (1980
32. Zhang Y., et al. Carbonarones A and B, new bioactive gamma-Pyrone and alpha-Pyridone derivatives from the marine-derived fungus Aspergillus carbonarius. J Antibiot (Tokyo) 60, 153-157 (2007
33. Nielsen K. F., Mogensen J. M., Johansen M., Larsen T. O. & Frisvad J. C. Review of secondary metabolites and mycotoxins from the Aspergillus niger group. Anal Bioanal Chem 395, 1225-1242 (2009
34. Frisvad J. C., Smedsgaard J., Samson R. A., Larsen T. O. & Thrane U. Fumonisin B2 production by Aspergillus niger. J Agric Food Chem 55, 9727-9732 (2007
35. Wang F. W. Bioactive metabolites from Guignardia sp., an endophytic fungus residing in Undaria pinnatifida. Chin J Nat Med 10, 72-76 (2012
36. Nishanth Kumar S., Dileep C., Mohandas C. B. N. & Jayaprakas C. A. Cyclo(D-Tyr-D-Phe): a new antibacterial, anticancer, and antioxidant cyclic dipeptide from Bacillus sp. N strain associated with a rhabditid entomopathogenic nematode. J Peptide Sci 20, 173-185 (2014
37. Kishore G., Sugumaran M. & Vaidyanathan C. S. Metabolism of DL-(+ /- )-phenylalanine by Aspergillus niger. J Bacteriol 128, 182-191 (1976
38. Cai T., et al. Chemical constituents of Pseudolarix kaempferi Gord. J Chin Pharm Sci 21, 428-435 (2012
39. Wang F., et al. Seven new prenylated indole diketopiperazine alkaloids from holothurian-derived fungus Aspergillus fumigatus. Tetrahedron 64, 7986-7991 (2008
40. Faulkner J. K. & Woodcock D. The metabolism of phenylacetic acid by Aspergillus niger. Phytochem 7, 1741-1742 (1968
41. Guo C. J., et al. Biosynthetic pathway for the epipolythiodioxopiperazine acetylaranotin in Aspergillus terreus revealed by genome-based deletion analysis. J Am Chem Soc 135, 7205-7213 (2013
42. Sauguet L., et al. Cyclodipeptide synthases, a family of class-I aminoacyl-tRNA synthetase-like enzymes involved in nonribosomal peptide synthesis. Nucleic Acids Res 39, 4475-4489 (2011
43. Schroeckh V., et al. Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans. Proc Natl Acad Sci U S A 106, 14558-14563 (2009
44. Finkle B. J., Nozaki M. & Fujisawa H. Ring cleavage of plant catechols by crystalline oxygenases. Phytochemistry 10, 235-242 (1971
45. Kieser T., Bibb M. J., Buttner M. J., Chater K. F. & Hopwood D. A. Practical Streptomyces genetics. (John Innes Foundation, Norwich U.K.; 2000
46. van Wezel G. P., et al. A new piece of an old jigsaw: glucose kinase is activated posttranslationally in a glucose transportdependent manner in Streptomyces coelicolor A3(2). J Mol Microbiol Biotechnol 12, 67-74 (2007
47. Colson S., et al. The chitobiose-binding protein, DasA, acts as a link between chitin utilization and morphogenesis in Streptomyces coelicolor. Microbiology 154, 373-382 (2008
48. Li N., et al. Relative quantification of proteasome activity by activity-based protein profiling and LC-MS/MS. Nat Protoc 8, 1155-1168 (2013
49. Wu C. S., van Wezel G. P. & Choi Y. Identification of novel endophenaside antibiotics produced by Kitasatospora sp. MBT66. J Antibiotics (Tokyo) in press (2015