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Volumn 12, Issue , 2015, Pages 139-174

Recovery and analysis of ribosomal rna sequences from the environment

(1)  Head, Ian M a  

a NONE

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; RNA 16S; RNA 18S;

EID: 84930199313     PISSN: 19406061     EISSN: 1940607X     Source Type: Book Series    
DOI: None     Document Type: Article
Times cited : (8)

References (81)
  • 1
    • 0003101854 scopus 로고
    • The study of microorganisms in situ: Progress and problems
    • Brock, T. D. (1987) The study of microorganisms in situ: progress and problems. Symp. Soc. Gen. Microbiol. 41, 1–17.
    • (1987) Symp. Soc. Gen. Microbiol , vol.41 , pp. 1-17
    • Brock, T.D.1
  • 2
    • 0022462668 scopus 로고
    • Microbial ecology and evolution: A ribosomal RNA approach. Annu
    • Olsen, G. J., Lane, D. J., Giovannoni, S. J., and Pace, N. R. (1986) Microbial ecology and evolution: a ribosomal RNA approach. Annu. Rev. Microbiol. 40, 337–365.
    • (1986) Rev. Microbiol , vol.40 , pp. 337-365
    • Olsen, G.J.1    Lane, D.J.2    Giovannoni, S.J.3    Pace, N.R.4
  • 3
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations by ribosomal RNA sequences
    • Pace N. R., Stahl D. A., Lane D. J., and Olsen G. J. (1986) The analysis of natural microbial populations by ribosomal RNA sequences. Adv. Microb. Ecol. 9, 1–55.
    • (1986) Adv. Microb. Ecol , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 4
    • 0024320129 scopus 로고
    • Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA
    • Weller R. and Ward D. M. (1989) Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA. Appl. Environ. Microbiol. 55, 1818–1822.
    • (1989) Appl. Environ. Microbiol , vol.55 , pp. 1818-1822
    • Weller, R.1    Ward, D.M.2
  • 5
    • 0025366454 scopus 로고
    • Genetic diversity in Sargasso Sea bacterioplankton
    • Giovannoni S. J., Britschgi, T. B., Moyer, C. L., and Field K. G. (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345, 60–63.
    • (1990) Nature , vol.345 , pp. 60-63
    • Giovannoni, S.J.1    Britschgi, T.B.2    Moyer, C.L.3    Field, K.G.4
  • 6
    • 0025366456 scopus 로고    scopus 로고
    • M. (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward D. M., Weller R., and Bateson M. M. (1990) 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345, 63–65.
    • Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.3
  • 7
    • 0024077490 scopus 로고
    • DNA amplification to enhance detection of genetically engineered bacteria in environmental samples
    • Steffan, R. J. and Atlas, R. M. (1988) DNA amplification to enhance detection of genetically engineered bacteria in environmental samples. Appl. Environ. Microbiol. 54, 2185–2191.
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 2185-2191
    • Steffan, R.J.1    Atlas, R.M.2
  • 8
    • 0026597527 scopus 로고
    • Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
    • Tsai, Y.-L. and Olson, B. H. (1992) Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl. Environ. Microbiol. 58, 754–757.
    • (1992) Appl. Environ. Microbiol , vol.58 , pp. 754-757
    • Tsai, Y.-L.1    Olson, B.H.2
  • 10
    • 0025743732 scopus 로고
    • Touchdown PCR to circumvent spurious priming during gene amplification
    • Don, R. H., Cox, P. T., Wainwright, B., Baker, K., and Mattick, J. S. (1991) “Touchdown” PCR to circumvent spurious priming during gene amplification. Nucleic Acids Res. 19, 4008.
    • (1991) Nucleic Acids Res , vol.19
    • Don, R.H.1    Cox, P.T.2    Wainwright, B.3    Baker, K.4    Mattick, J.S.5
  • 11
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman, J. and Triplet, E. W. (1997) Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl. Environ. Microbiol. 63, 2647–2653.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplet, E.W.2
  • 12
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small subunit rDNA sequence analysis
    • Godon, J.-J., Zumstein, E., Dabert, P., Habouzit, F., and Moletta, R. (1997) Molecular microbial diversity of an anaerobic digestor as determined by small subunit rDNA sequence analysis. Appl. Environ. Microbiol. 63, 2802–2813.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2802-2813
    • Godon, J.-J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 13
    • 85143848022 scopus 로고
    • Ribosomal RNA analysis of microorganisms as they occur in nature
    • Ward, D. M., Bateson, M. M., Weller, R., and Ruff-Roberts A. L. (1992) Ribosomal RNA analysis of microorganisms as they occur in nature. Adv. Microb. Ecol. 12, 219–286.
    • (1992) Adv. Microb. Ecol , vol.12 , pp. 219-286
    • Ward, D.M.1    Bateson, M.M.2    Weller, R.3    Ruff-Roberts, A.L.4
  • 14
    • 0029789623 scopus 로고    scopus 로고
    • A quantitative map of nucleotide substitution rates in bacterial ribosomal RNA
    • van de Peer, Y, Chapelle, S., and de Wachter, R. (1996) A quantitative map of nucleotide substitution rates in bacterial ribosomal RNA. Nucleic Acids Res. 24, 3381–3391.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3381-3391
    • Van De Peer, Y.1    Chapelle, S.2    De Wachter, R.3
  • 15
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox, G. E., Wisotzkey, J. D., and Jurtshuk, P., Jr. (1992) How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166–170.
    • (1992) Int. J. Syst. Bacteriol , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 16
    • 0030447540 scopus 로고    scopus 로고
    • Compilation of pseudomonad sequences present in a database on the structure of ribosomal RNA. Systematic Appl
    • van de Peer, Y., Vancanneyt, M., and de Wachter, R. (1996) Compilation of pseudomonad sequences present in a database on the structure of ribosomal RNA. Systematic Appl. Microbiol. 19, 493–500.
    • (1996) Microbiol , vol.19 , pp. 493-500
    • Van De Peer, Y.1    Vancanneyt, M.2    De Wachter, R.3
  • 17
    • 0029890507 scopus 로고    scopus 로고
    • In situ visualization of high genetic diversity in a natural microbial community
    • Amann, R., Snaidr, J., Wagner, M., Ludwig, W., and Schleifer, K.-H. (1996) In situ visualization of high genetic diversity in a natural microbial community. J. Bacteriol 178, 3496–3500.
    • (1996) J. Bacteriol , vol.178 , pp. 3496-3500
    • Amann, R.1    Snaidr, J.2    Wagner, M.3    Ludwig, W.4    Schleifer, K.-H.5
  • 18
    • 0026520954 scopus 로고
    • Phylogenetic diversity and identification of non-culturable magnetotactic bacteria. Systematic Appl
    • Spring, S., Amann, R., Ludwig, W., Schleifer, K.-H., and Petersen, N. (1992) Phylogenetic diversity and identification of non-culturable magnetotactic bacteria. Systematic Appl. Microbiol. 15, 116–122.
    • (1992) Microbiol , vol.15 , pp. 116-122
    • Spring, S.1    Amann, R.2    Ludwig, W.3    Schleifer, K.-H.4    Petersen, N.5
  • 19
    • 0013927706 scopus 로고
    • Ribonucleic acid composition of bacteria as a function of growth rate
    • Rosset, R., Julien, J., and Monier, R. (1966) Ribonucleic acid composition of bacteria as a function of growth rate. J. Mol. Biol. 18, 308–320.
    • (1966) J. Mol. Biol , vol.18 , pp. 308-320
    • Rosset, R.1    Julien, J.2    Monier, R.3
  • 20
    • 0000994831 scopus 로고
    • The distribution of soluble and ribosomal RNA as a function of growth rate
    • Kjeldgaard, N. O. and Kurland, C. G. (1963) The distribution of soluble and ribosomal RNA as a function of growth rate. J. Mol. Biol. 6, 341–348.
    • (1963) J. Mol. Biol , vol.6 , pp. 341-348
    • Kjeldgaard, N.O.1    Kurland, C.G.2
  • 21
    • 0003066510 scopus 로고
    • Studies on the role of ribonucleic acid in the growth of bacteria
    • Neidhardt, F. and Magasanik, B. (1959) Studies on the role of ribonucleic acid in the growth of bacteria. Biochim. Biophys. Acta 42, 99–116.
    • (1959) Biochim. Biophys. Acta , vol.42 , pp. 99-116
    • Neidhardt, F.1    Magasanik, B.2
  • 22
    • 0029805854 scopus 로고    scopus 로고
    • Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl. Environ
    • Felske, A., Engelen, B., Nübel, U., and Backhaus, H. (1996) Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl. Environ. Microbiol. 62, 4162–4167.
    • (1996) Microbiol , vol.62 , pp. 4162-4167
    • Felske, A.1    Engelen, B.2    Nübel, U.3    Backhaus, H.4
  • 24
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. (1992) Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA. 89, 5685–5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 25
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E. F., Wu, K. Y., Prezelin, B. B., and Jovine, R. V. M. (1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371, 695–697.
    • (1994) Nature , vol.371 , pp. 695-697
    • Delong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.4
  • 26
    • 0030613343 scopus 로고    scopus 로고
    • Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Appl. Environ
    • Fry, N. K., Fredrickson, J. K., Fishbain, S., Wagner, M., and Stahl, D. A. (1997) Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Appl. Environ. Microbiol. 63, 1498–1500.
    • (1997) Microbiol , vol.63 , pp. 1498-1500
    • Fry, N.K.1    Fredrickson, J.K.2    Fishbain, S.3    Wagner, M.4    Stahl, D.A.5
  • 27
    • 0029667164 scopus 로고    scopus 로고
    • Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments
    • Teske, A., Wawer, C., Muyzer, G., and Ramsing, N. B. (1996) Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62, 1405–1415.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 1405-1415
    • Teske, A.1    Wawer, C.2    Muyzer, G.3    Ramsing, N.B.4
  • 28
    • 0028883636 scopus 로고
    • Amplification of 16S ribosomal RNA genes of autotrophic ammonia-oxidising bacteria demonstrates the ubiquity of nitrosospiras in the environment
    • Hiorns, W. D., Hastings, R. C., Head, I. M., McCarthy, A. J., Saunders, J. R., Pickup, R. W., and Hall, G. H. (1995) Amplification of 16S ribosomal RNA genes of autotrophic ammonia-oxidising bacteria demonstrates the ubiquity of nitrosospiras in the environment. Microbiology 141, 2793–2800.
    • (1995) Microbiology , vol.141 , pp. 2793-2800
    • Hiorns, W.D.1    Hastings, R.C.2    Head, I.M.3    McCarthy, A.J.4    Saunders, J.R.5    Pickup, R.W.6    Hall, G.H.7
  • 29
    • 0026594080 scopus 로고
    • Use of the polymerase chain reaction and oligonucleotide probes for the rapid detection and identification of Carnobacterium species from meat
    • Brooks, J. L., Moore, A. S., Patchett, R. A., Collins, M. D., and Kroll, R. G. (1992) Use of the polymerase chain reaction and oligonucleotide probes for the rapid detection and identification of Carnobacterium species from meat. J. Appl. Bacteriol. 72, 294–301.
    • (1992) J. Appl. Bacteriol , vol.72 , pp. 294-301
    • Brooks, J.L.1    Moore, A.S.2    Patchett, R.A.3    Collins, M.D.4    Kroll, R.G.5
  • 30
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl. Environ
    • Gordon D. A., and Giovannoni S. J. (1996) Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 62, 1171–1177.
    • (1996) Microbiol , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 31
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch
    • Muyzer, G., Teske, A., Wirsen, C. O., and Jannasch, H. W. (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164, 165–172.
    • (1995) Microbiol , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 32
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ
    • Kowalchuk, G. A., Stephen, J. R., DeBoer, W., Prosser, J. I., Embley, T. M., and Woldendorp, J. W. (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl. Environ. Microbiol. 63, 1489–1497.
    • (1997) Microbiol , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    Deboer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 33
    • 0031027068 scopus 로고    scopus 로고
    • Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl. Environ
    • Field, K. G., Gordon, D., Wright, T., Rappe, M., Urbach, E., Vergin, K., and Giovannoni, S. J. (1997) Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria. Appl. Environ. Microbiol. 63, 63–70.
    • (1997) Microbiol , vol.63 , pp. 63-70
    • Field, K.G.1    Gordon, D.2    Wright, T.3    Rappe, M.4    Urbach, E.5    Vergin, K.6    Giovannoni, S.J.7
  • 34
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T. D., Britschgi, T. B., Krest, R. L., and Giovannoni, S. J. (1995) Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanog. 40, 148–158.
    • (1995) Limnol. Oceanog , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 35
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
    • Massana, R., Murray, A. E., Preston, C. M., and DeLong, E. F. (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl. Environ. Microbiol. 63, 50–56.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    Delong, E.F.4
  • 36
    • 0030613348 scopus 로고    scopus 로고
    • Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis
    • Ferris, M. J., and Ward, D. M. (1997) Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 63, 1375–1381.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1375-1381
    • Ferris, M.J.1    Ward, D.M.2
  • 37
    • 0000162807 scopus 로고
    • Microbial diversity in oceanic systems: RRNA approaches to the study of unculturable microbes
    • Joint, I., ed.), Springer-Verlag, Berlin
    • Giovannoni, S. J., Mullins, T. D., and Field, K. G. (1995) Microbial diversity in oceanic systems: rRNA approaches to the study of unculturable microbes, in Molecular Ecology of Aquatic Microbes, NATO ASI series G38 (Joint, I., ed.), Springer-Verlag, Berlin, pp. 217–248.
    • (1995) Molecular Ecology of Aquatic Microbes, NATO ASI Series G38 , pp. 217-248
    • Giovannoni, S.J.1    Mullins, T.D.2    Field, K.G.3
  • 38
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of the population parameters
    • Good, I. J. (1953) The population frequencies of species and the estimation of the population parameters. Biometrika 40, 237–264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 39
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNADNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. and Goebel, B. M. (1994) Taxonomic note: a place for DNADNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846–849.
    • (1994) Int. J. Syst. Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 40
    • 0029821294 scopus 로고    scopus 로고
    • Emendation of the genus Planococcus and transfer of Flavobacterium okeanokoites Zobell and Upham 1944 to the genus Planococcus as Planococcus okeanokoites comb. Nov
    • Nakagawa, Y., Sakane, T., and Yokota, A. (1996) Emendation of the genus Planococcus and transfer of Flavobacterium okeanokoites Zobell and Upham 1944 to the genus Planococcus as Planococcus okeanokoites comb. nov. Int. J. Syst. Bacteriol. 46, 866–870.
    • (1996) Int. J. Syst. Bacteriol , vol.46 , pp. 866-870
    • Nakagawa, Y.1    Sakane, T.2    Yokota, A.3
  • 41
    • 0026602645 scopus 로고
    • Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui
    • Mylvaganam, S., and Dennis, P. P. (1992) Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui. Genetics. 130, 399–410.
    • (1992) Genetics , vol.130 , pp. 399-410
    • Mylvaganam, S.1    Dennis, P.P.2
  • 42
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nubel, U., Engelen, B., Felske, A., Snaidr, J., Weishuber, A., Amann, R. I., Ludwig, W., and Backhaus, H. (1996) Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178, 5636–5643.
    • (1996) J. Bacteriol , vol.178 , pp. 5636-5643
    • Nubel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Weishuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 44
    • 0026794170 scopus 로고
    • Differential amplification of rRNA genes by polymerase chain reaction. Appl. Environ
    • Reysenbach A., Giver L. J., Wickham G. S., and Pace N. R. (1992) Differential amplification of rRNA genes by polymerase chain reaction. Appl. Environ. Microbiol. 58, 3417–3418.
    • (1992) Microbiol , vol.58 , pp. 3417-3418
    • Reysenbach, A.1    Giver, L.J.2    Wickham, G.S.3    Pace, N.R.4
  • 45
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ
    • Farrelly, V., Rainey, F. A., and Stackebrandt, E. (1995) Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61, 2798–2801.
    • (1995) Microbiol , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 46
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ
    • Suzuki M. T. and Giovannoni S. J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62, 625–630.
    • (1996) Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 47
    • 0000678741 scopus 로고
    • Dependence on the taxon composition of clone libraries for PCR amplified, naturally occuring 16S rDNA on the primer pair and the cloning system used
    • Rainey, F. A., Ward, N., Sly, L. I., and Stackebrandt, E. (1994) Dependence on the taxon composition of clone libraries for PCR amplified, naturally occuring 16S rDNA on the primer pair and the cloning system used. Experientia 50, 796,797.
    • (1994) Experientia , vol.50
    • Rainey, F.A.1    Ward, N.2    Sly, L.I.3    Stackebrandt, E.4
  • 48
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed culture of strict barophilic bacteria
    • Liesack, W., Weyland, H., Stackebrandt, E. (1991) Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed culture of strict barophilic bacteria. Microbial Ecol. 21, 191–198.
    • (1991) Microbial Ecol , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 49
    • 0028082207 scopus 로고
    • Recognition of chimeric small subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ
    • Kopczynski, E. D., Bateson, M. M., and Ward, D. M. (1994) Recognition of chimeric small subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ. Microbiol. 60, 746–748.
    • (1994) Microbiol , vol.60 , pp. 746-748
    • Kopczynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 50
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
    • Wang G. C.-Y. and Wang Y. (1996) The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species. Microbiology 142, 1107–1114.
    • (1996) Microbiology , vol.142 , pp. 1107-1114
    • Wang, G.C.1    Wang, Y.2
  • 51
    • 0030932148 scopus 로고    scopus 로고
    • Quantitative analysis of 16S rDNA using competitive PCR and the QPCR™ System 5000
    • Blok, H. J., Gohike, A. M., and Akkermans, A. D. L. (1997) Quantitative analysis of 16S rDNA using competitive PCR and the QPCR™ System 5000. Biotechniques 22, 700–704.
    • (1997) Biotechniques , vol.22 , pp. 700-704
    • Blok, H.J.1    Gohike, A.M.2    Akkermans, A.3
  • 52
    • 0030438385 scopus 로고    scopus 로고
    • Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ
    • Lee, S. Y., Bollinger, J., Bezdicek, D., and Ogram, A. (1996) Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method. Appl. Environ. Microbiol. 62, 3787–3793.
    • (1996) Microbiol , vol.62 , pp. 3787-3793
    • Lee, S.Y.1    Bollinger, J.2    Bezdicek, D.3    Ogram, A.4
  • 53
    • 0030988067 scopus 로고    scopus 로고
    • A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer. Appl. Environ
    • Wright, T. D., Vergin, K. L., Boyd, P. W., and Giovannoni, S. J. (1997) A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer. Appl. Environ. Microbiol. 63, 1441–1448.
    • (1997) Microbiol , vol.63 , pp. 1441-1448
    • Wright, T.D.1    Vergin, K.L.2    Boyd, P.W.3    Giovannoni, S.J.4
  • 54
    • 0027289343 scopus 로고
    • Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium. Appl. Environ
    • Kerkhof, L. and Ward, B. B. (1993) Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium. Appl. Environ. Microbiol. 59, 1303–1309.
    • (1993) Microbiol , vol.59 , pp. 1303-1309
    • Kerkhof, L.1    Ward, B.B.2
  • 55
    • 0026768316 scopus 로고
    • DNase I treatment of Taq DNA polymerase for complete PCR decontamination
    • Rochelle, P. A., Weightman, A. J., and Fry, J. C. (1992) DNase I treatment of Taq DNA polymerase for complete PCR decontamination. Biotechniques 13, 520.
    • (1992) Biotechniques , vol.13
    • Rochelle, P.A.1    Weightman, A.J.2    Fry, J.C.3
  • 56
    • 0002613892 scopus 로고
    • Extraction and amplification of 16S rRNA genes from deep marine sediments and seawater to assess bacterial community diversity
    • Trevors, J. T. and van Elsas, J. D., ed.), Springer-Verlag, Berlin
    • Rochelle, P. A., Will, J. A. K., Fry, J. C., Jenkins, G. J. S., Parkes, R. J., Turley, C. M., and Weightman, A. J. (1995) Extraction and amplification of 16S rRNA genes from deep marine sediments and seawater to assess bacterial community diversity, in Nucleic Acids in the Environment: Methods and Applications (Trevors, J. T. and van Elsas, J. D., ed.), Springer-Verlag, Berlin, pp. 219–239.
    • (1995) Nucleic Acids in the Environment: Methods and Applications , pp. 219-239
    • Rochelle, P.A.1    Will, J.2    Fry, J.C.3    Jenkins, G.4    Parkes, R.J.5    Turley, C.M.6    Weightman, A.J.7
  • 57
    • 0030990839 scopus 로고    scopus 로고
    • Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small subunit rRNA primers and probes
    • Zhou, J., Palumbo, A. V., and Tiedje, J. M. (1997) Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small subunit rRNA primers and probes. Appl. Environ. Microbiol. 63, 2384–2390.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2384-2390
    • Zhou, J.1    Palumbo, A.V.2    Tiedje, J.M.3
  • 59
    • 0025042447 scopus 로고
    • Restriction endonuclease cleavage at the termini of PCR products
    • Kaufman, D. L. and Evans, G. A. (1990) Restriction endonuclease cleavage at the termini of PCR products. Biotechniques 9, 304–305.
    • (1990) Biotechniques , vol.9 , pp. 304-305
    • Kaufman, D.L.1    Evans, G.A.2
  • 60
    • 0028184602 scopus 로고
    • Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S ribosomal RNA genes from a microbial mat at an active hydrothermal vent system, Loihi Seamount
    • Moyer, C. L., Dobbs, F. C., and Karl, D. M. (1994) Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S ribosomal RNA genes from a microbial mat at an active hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60, 871–879.
    • (1994) Hawaii. Appl. Environ. Microbiol , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 61
    • 0029853626 scopus 로고    scopus 로고
    • Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations
    • Rheims, H., Sproer, C., Rainey, F. A., and Stackebrandt, E. (1996) Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology 142, 2863–2870.
    • (1996) Microbiology , vol.142 , pp. 2863-2870
    • Rheims, H.1    Sproer, C.2    Rainey, F.A.3    Stackebrandt, E.4
  • 63
    • 0023734473 scopus 로고
    • Novel non-templated nucleotide reactions catalysed by procaryotic and eukaryotic DNA polymerases
    • Clark, J. M. (1988) Novel non-templated nucleotide reactions catalysed by procaryotic and eukaryotic DNA polymerases. Nucleic Acids Res. 18, 9677–9686.
    • (1988) Nucleic Acids Res , vol.18 , pp. 9677-9686
    • Clark, J.M.1
  • 64
    • 0025443548 scopus 로고
    • 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community
    • Ward D. M., Weller R., and Bateson M. M. (1990) 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community. FEMS Microbiol. Rev. 75, 105–116.
    • (1990) FEMS Microbiol. Rev , vol.75 , pp. 105-116
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 65
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl. Environ
    • Tsai, Y.-L. and Olson, B. H. (1992) Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl. Environ. Microbiol. 58, 2292–2295.
    • (1992) Microbiol , vol.58 , pp. 2292-2295
    • Tsai, Y.-L.1    Olson, B.H.2
  • 66
    • 0030895001 scopus 로고    scopus 로고
    • Introduction of anaerobic dechlorinating bacteria into soil slurry microcosms and nested- PCR monitoring. Appl. Environ
    • Fantroussi, S. E., Manhillon, J., Naveau, H., and Agathos, S. N. (1997) Introduction of anaerobic dechlorinating bacteria into soil slurry microcosms and nested- PCR monitoring. Appl. Environ. Microbiol. 63, 806–811.
    • (1997) Microbiol , vol.63 , pp. 806-811
    • Fantroussi, S.E.1    Manhillon, J.2    Naveau, H.3    Agathos, S.N.4
  • 67
    • 0029898082 scopus 로고    scopus 로고
    • Rapid and sensitive method for the detection of Mycobacterium chlorophenolicum PCP- 1 in soil based on 16S rRNA gene-targeted PCR
    • Briglia, M., Eggen, R. I. L., de Vos, W. M., and van Elsas, J. D. (1996) Rapid and sensitive method for the detection of Mycobacterium chlorophenolicum PCP- 1 in soil based on 16S rRNA gene-targeted PCR. Appl. Environ. Microbiol. 62, 1478–1480.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 1478-1480
    • Briglia, M.1    Eggen, R.2    De Vos, W.M.3    Van Elsas, J.D.4
  • 68
    • 0030942414 scopus 로고
    • Phylogenetic diversity of natural populations of ammonia-oxidizers investigated by specific PCR amplification
    • Voytek, M. A., Ward, B. B., and Witzel, K.-P. (1995) Phylogenetic diversity of natural populations of ammonia-oxidizers investigated by specific PCR amplification. Microbial Ecol. 33, 87–96.
    • (1995) Microbial Ecol , vol.33 , pp. 87-96
    • Voytek, M.A.1    Ward, B.B.2    Witzel, K.-P.3
  • 69
    • 0029114258 scopus 로고
    • Detection of novel marine methanotrophs using phylogenetic and functional gene probes after methane enrichment
    • Holmes, A. J., Owens, N. J. P., and Murrell, J. C. (1995) Detection of novel marine methanotrophs using phylogenetic and functional gene probes after methane enrichment. Microbiology 141, 1947–1955.
    • (1995) Microbiology , vol.141 , pp. 1947-1955
    • Holmes, A.J.1    Owens, N.2    Murrell, J.C.3
  • 70
    • 0030797838 scopus 로고    scopus 로고
    • Development of a semi-nested PCR method for detection of Legionella species and its application to surveillance of Legionellae in hospital cooling tower water
    • Miyamoto, H., Yamamoto, H., Arima, K, Fujii, J, Maruta, K., Izu, K., Shiomori, T., and Yoshida, S.-I. (1997) Development of a semi-nested PCR method for detection of Legionella species and its application to surveillance of Legionellae in hospital cooling tower water. Appl. Environ. Microbiol. 63, 2489–2494.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 2489-2494
    • Miyamoto, H.1    Yamamoto, H.2    Arima, K.3    Fujii, J.4    Maruta, K.5    Izu, K.6    Shiomori, T.7    Yoshida, S.-I.8
  • 71
    • 0028357021 scopus 로고
    • Detection of culture-resistant bacterial pathogens by amplification and sequencing of ribosomal DNA. Clin. Infect
    • Wilson, K. H. (1994) Detection of culture-resistant bacterial pathogens by amplification and sequencing of ribosomal DNA. Clin. Infect. Dis. 18, 958–962.
    • (1994) Dis , vol.18 , pp. 958-962
    • Wilson, K.H.1
  • 72
    • 0026757624 scopus 로고
    • 16S rRNA-based probes and polymerase chain reaction method to detect Listeria monocytogenes cells added to foods
    • Wang, K.-F., Cao, W.-W., and Johnson, M. G. (1992) 16S rRNA-based probes and polymerase chain reaction method to detect Listeria monocytogenes cells added to foods. Appl. Environ. Microbiol. 58, 2827–2831.
    • (1992) Appl. Environ. Microbiol , vol.58 , pp. 2827-2831
    • Wang, K.-F.1    Cao, W.-W.2    Johnson, M.G.3
  • 73
    • 0030613231 scopus 로고    scopus 로고
    • Population structure and physiological change within a hot spring microbial mat community following disturbance
    • Ferris, M. J., Nold, S. C., Revsbech, N. P., and Ward, D. M. (1997) Population structure and physiological change within a hot spring microbial mat community following disturbance. Appl. Environ. Microbiol. 63, 1367–1374.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1367-1374
    • Ferris, M.J.1    Nold, S.C.2    Revsbech, N.P.3    Ward, D.M.4
  • 74
    • 0031015322 scopus 로고    scopus 로고
    • Succession and convergence of biofilm communities in fixedfilm reactors treating aromatic hydrocarbons in groundwater
    • Massol-Deya, A., Weller, R., Rios-Hernandez, L., Zhou, J.-Z., Hickey, R. F., and Tiedje, J. M. (1997) Succession and convergence of biofilm communities in fixedfilm reactors treating aromatic hydrocarbons in groundwater. Appl. Environ. Microbiol. 63, 270–276.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 270-276
    • Massol-Deya, A.1    Weller, R.2    Rios-Hernandez, L.3    Zhou, J.-Z.4    Hickey, R.F.5    Tiedje, J.M.6
  • 75
    • 0030613341 scopus 로고    scopus 로고
    • Microbial succession during a field evaluation of phenol and toluene as the primary substrates for Trichloroethene cometabolism
    • Fries, M. R., Hopkins, G. D., McCarty, P. L., Forney, L. J., and Tiedje, J. M. (1997) Microbial succession during a field evaluation of phenol and toluene as the primary substrates for Trichloroethene cometabolism. Appl. Environ. Microbiol. 63, 1515–1522.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1515-1522
    • Fries, M.R.1    Hopkins, G.D.2    McCarty, P.L.3    Forney, L.J.4    Tiedje, J.M.5
  • 76
    • 0029902203 scopus 로고    scopus 로고
    • A computersimulated restriction fragment length polymorphism analysis of bacterial small subunit ribosomal RNA genes: Efficiency of selected tetrameric restriction enzymes for studies of microbial diversity in nature
    • Moyer, C. L., Tiedje, J. M., Dobbs, F. C., and Karl, D. M. (1996) A computersimulated restriction fragment length polymorphism analysis of bacterial small subunit ribosomal RNA genes: efficiency of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl. Environ. Microbiol. 62, 2501–2507.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 2501-2507
    • Moyer, C.L.1    Tiedje, J.M.2    Dobbs, F.C.3    Karl, D.M.4
  • 77
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
    • Edwards, U., Rogall, T., Blöcker, H., Emde, M., and Böttger, E. C. (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17, 7843–7853.
    • (1989) Nucleic Acids Res , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blöcker, H.3    Emde, M.4    Böttger, E.C.5
  • 78
    • 0025965114 scopus 로고
    • Rapid cycle DNA amplification—time and temperature optimization
    • Wittwer, C. T., and Garling, D. J. (1991) Rapid cycle DNA amplification—time and temperature optimization. Biotechniques 10, 76.
    • (1991) Biotechniques , vol.10
    • Wittwer, C.T.1    Garling, D.J.2
  • 79
    • 0031022694 scopus 로고    scopus 로고
    • Continuous fluorescence monitoring of rapid cycle DNA amplification
    • Wittwer, C. T., Herrmann, M. G., Moss, A. A., and Rasmussen, R. P. (1997) Continuous fluorescence monitoring of rapid cycle DNA amplification. Biotechniques 22, 130–138.
    • (1997) Biotechniques , vol.22 , pp. 130-138
    • Wittwer, C.T.1    Herrmann, M.G.2    Moss, A.A.3    Rasmussen, R.P.4
  • 80
    • 0030614426 scopus 로고    scopus 로고
    • The LightCycler™: A microvolume multisample fluorimeter with rapid temperature control
    • Wittwer, C. T., Ririe, K. M., Andrew, R. V., David, D. A., Gundry, R. A., and Balis, U. J. (1997) The LightCycler™: a microvolume multisample fluorimeter with rapid temperature control. Biotechniques 22, 176–181.
    • (1997) Biotechniques , vol.22 , pp. 176-181
    • Wittwer, C.T.1    Ririe, K.M.2    Rew, R.V.3    David, D.A.4    Gundry, R.A.5    Balis, U.J.6
  • 81
    • 0030001221 scopus 로고    scopus 로고
    • Phylogenetic probes for analysing abundance and spatial organization of nitrifying bacteria
    • Mobarry, B. K., Wagner, M., Urbain, V., Rittman, B. E., and Stahl, D. A. (1996) Phylogenetic probes for analysing abundance and spatial organization of nitrifying bacteria. Appl. Environ. Microbiol. 62, 2156–2162.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 2156-2162
    • Mobarry, B.K.1    Wagner, M.2    Urbain, V.3    Rittman, B.E.4    Stahl, D.A.5


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