메뉴 건너뛰기




Volumn 142, Issue 5, 1996, Pages 1107-1114

The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species

Author keywords

16S rRNA gene; Chimeric molecules; Microbial diversity; PCR

Indexed keywords

RIBOSOME DNA; RNA 16S;

EID: 0029972052     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-142-5-1107     Document Type: Article
Times cited : (205)

References (30)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R., Ludwig, W. & Scheifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59, 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.1    Ludwig, W.2    Scheifer, K.H.3
  • 2
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., Fundyga, R. E., Jeffries, M. W. & Pace, N. R. (1994). Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc Natl Acad Sci USA 91, 1609-1613.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 3
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius, J., Dull, T. J., Sleeter, D. D. & Noller, H. F. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127.
    • (1981) J Mol Biol , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 5
    • 0028354883 scopus 로고
    • Diversity of cultivable and uncultivable oral Spirochetes from a patient with severe destructive periodontitis
    • Choi, B. K., Paster, B. J., Dewhirst, F. E. & Gobel, U. B. (1994). Diversity of cultivable and uncultivable oral Spirochetes from a patient with severe destructive periodontitis. Infect Immun 62, 1889-1895.
    • (1994) Infect Immun , vol.62 , pp. 1889-1895
    • Choi, B.K.1    Paster, B.J.2    Dewhirst, F.E.3    Gobel, U.B.4
  • 6
  • 7
    • 0023088933 scopus 로고
    • Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs
    • Ikuta, S., Takagi, K., Wallace, R. B. & Itakura, K. (1987). Dissociation kinetics of 19 base paired oligonucleotide-DNA duplexes containing different single mismatched base pairs. Nucleic Acids Res 15, 797-805.
    • (1987) Nucleic Acids Res , vol.15 , pp. 797-805
    • Ikuta, S.1    Takagi, K.2    Wallace, R.B.3    Itakura, K.4
  • 8
    • 0002367719 scopus 로고
    • Optimization of PCRs
    • Edited by M. A. Innis, D. H. Gelfand, J. J. Sninski & T. J. White. San Diego: Academic Press
    • Innis, M. A. & Gelfand, D. H. (1990). Optimization of PCRs. In PCR Protocols: a Guide to Methods and Applications, pp. 3-12. Edited by M. A. Innis, D. H. Gelfand, J. J. Sninski & T. J. White. San Diego: Academic Press.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 3-12
    • Innis, M.A.1    Gelfand, D.H.2
  • 9
    • 0021155246 scopus 로고
    • Synthesis and use of synthetic oligonucleotides
    • Itakura, K., Rossi, J. J. & Wallace, R. B. (1984). Synthesis and use of synthetic oligonucleotides. Annu Rev Biochem 53, 323-340.
    • (1984) Annu Rev Biochem , vol.53 , pp. 323-340
    • Itakura, K.1    Rossi, J.J.2    Wallace, R.B.3
  • 10
    • 0028082207 scopus 로고
    • Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
    • Kopczynski, E. D., Bateson, M. M. & Ward, D. M. (1994). Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl Environ Microbiol 60, 746-748.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 746-748
    • Kopczynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 12
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W. & Stackebrandt, E. (1992). Occurrence of novel groups of the domain bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J Bacteriol 174, 5072-5078.
    • (1992) J Bacteriol , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 13
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
    • Liesack, W., Weyland, H. & Stackebrandt, E. (1991). Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microb Ecol 21, 191-198.
    • (1991) Microb Ecol , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 16
    • 0028976424 scopus 로고
    • Phylogenetic diversity of the bacterial community from a microbial mat at the active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., Dobbs, F. C. & Carl, D. M. (1995). Phylogenetic diversity of the bacterial community from a microbial mat at the active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 61, 1555-1562.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1555-1562
    • Moyer, C.L.1    Dobbs, F.C.2    Carl, D.M.3
  • 17
    • 0025230558 scopus 로고
    • DNA damage promotes jumping between templates during enzymatic amplification
    • Paabo S., Irwin, D. M. & Wilson, A. C. (1992). DNA damage promotes jumping between templates during enzymatic amplification. J Biol Chem 265, 4718-4721.
    • (1992) J Biol Chem , vol.265 , pp. 4718-4721
    • Paabo, S.1    Irwin, D.M.2    Wilson, A.C.3
  • 18
    • 0026794170 scopus 로고
    • Differential amplification of rRNA genes by polymerase chain reaction
    • Reysenbach, A. L., Giver, L. J., Wickham, G. S. & Pace, N. R. (1992). Differential amplification of rRNA genes by polymerase chain reaction. Appl Environ Microbiol 58, 3417-3418.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 3417-3418
    • Reysenbach, A.L.1    Giver, L.J.2    Wickham, G.S.3    Pace, N.R.4
  • 19
    • 0028308089 scopus 로고
    • Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
    • Reysenbach, A. L., Wickham, G. S. & Pace, N. R. (1994). Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl Environ Microbiol 60, 2113-2119.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 2113-2119
    • Reysenbach, A.L.1    Wickham, G.S.2    Pace, N.R.3
  • 20
    • 0028915470 scopus 로고
    • Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences
    • Robison-Cox, J. F., Bateson, M. M. & Ward, D. M. (1995). Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences. Appl Environ Microbiol 61, 1240-1245.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1240-1245
    • Robison-Cox, J.F.1    Bateson, M.M.2    Ward, D.M.3
  • 22
    • 0028916092 scopus 로고
    • Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis
    • Schuppler, M., Mertens, F., Schon, G. & Gobel, U. B. (1995). Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis. Microbiology 141, 513-521.
    • (1995) Microbiology , vol.141 , pp. 513-521
    • Schuppler, M.1    Mertens, F.2    Schon, G.3    Gobel, U.B.4
  • 23
    • 0024341521 scopus 로고
    • Hybrid DNA artifact from PCR of closely related target sequences
    • Shuldiner, A. R., Nirula, A. & Roth, J. (1989). Hybrid DNA artifact from PCR of closely related target sequences. Nucleic Acids Res 17, 4409.
    • (1989) Nucleic Acids Res , vol.17 , pp. 4409
    • Shuldiner, A.R.1    Nirula, A.2    Roth, J.3
  • 25
    • 0026708461 scopus 로고
    • Rapid method for separation of bacterial DNA from humic substances in sediments for PCR
    • Tsai, Y. L. & Olson, B. H. (1992). Rapid method for separation of bacterial DNA from humic substances in sediments for PCR. Appl Environ Microbiol 58, 2292-2295.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2292-2295
    • Tsai, Y.L.1    Olson, B.H.2
  • 26
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., Weller, R. & Bateson, M. M. (1990). 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345, 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 27
    • 0024320129 scopus 로고
    • Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA
    • Weller, R. & Ward, D. M. (1989). Selective recovery of 16S rRNA sequences from natural microbial communities in the form of cDNA. Appl Environ Microbiol 55, 1818-1822.
    • (1989) Appl Environ Microbiol , vol.55 , pp. 1818-1822
    • Weller, R.1    Ward, D.M.2
  • 28
    • 0025731189 scopus 로고
    • 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
    • Weller, R., Weller, J. W. & Ward, D. M. (1991). 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl Environ Microbiol 57, 1146-1151.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1146-1151
    • Weller, R.1    Weller, J.W.2    Ward, D.M.3
  • 29
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. (1987). Bacterial evolution. Microbiol Rev 51, 221-271.
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.