-
1
-
-
0036800369
-
Enhanced expression and HIV-1 inhibition of chimeric tRNA(Lys3)-ribozymes under dual U6 snRNA and tRNA promoters
-
Z. Chang, S. Westaway, S. Li, J.A. Zaia, J.J. Rossi, and L.J. Scherer Enhanced expression and HIV-1 inhibition of chimeric tRNA(Lys3)-ribozymes under dual U6 snRNA and tRNA promoters Mol. Ther. 6 2002 481 489
-
(2002)
Mol. Ther.
, vol.6
, pp. 481-489
-
-
Chang, Z.1
Westaway, S.2
Li, S.3
Zaia, J.A.4
Rossi, J.J.5
Scherer, L.J.6
-
2
-
-
78649429678
-
Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins
-
S.J. Culler, K.G. Hoff, and C.D. Smolke Reprogramming cellular behavior with RNA controllers responsive to endogenous proteins Science 330 2010 1251 1255
-
(2010)
Science
, vol.330
, pp. 1251-1255
-
-
Culler, S.J.1
Hoff, K.G.2
Smolke, C.D.3
-
3
-
-
84913570361
-
Broccoli: Rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution
-
G.S. Filonov, J.D. Moon, N. Svensen, and S.R. Jaffrey Broccoli: rapid selection of an RNA mimic of green fluorescent protein by fluorescence-based selection and directed evolution J. Am. Chem. Soc. 136 2014 16299 16308
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 16299-16308
-
-
Filonov, G.S.1
Moon, J.D.2
Svensen, N.3
Jaffrey, S.R.4
-
4
-
-
8044253998
-
Expression of small, therapeutic RNAs in human cell nuclei
-
P.D. Good, A.J. Krikos, S.X. Li, E. Bertrand, N.S. Lee, L. Giver, A. Ellington, J.A. Zaia, J.J. Rossi, and D.R. Engelke Expression of small, therapeutic RNAs in human cell nuclei Gene Ther. 4 1997 45 54
-
(1997)
Gene Ther.
, vol.4
, pp. 45-54
-
-
Good, P.D.1
Krikos, A.J.2
Li, S.X.3
Bertrand, E.4
Lee, N.S.5
Giver, L.6
Ellington, A.7
Zaia, J.A.8
Rossi, J.J.9
Engelke, D.R.10
-
5
-
-
84890771933
-
Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging
-
K.Y. Han, B.J. Leslie, J. Fei, J. Zhang, and T. Ha Understanding the photophysics of the spinach-DFHBI RNA aptamer-fluorogen complex to improve live-cell RNA imaging J. Am. Chem. Soc. 135 2013 19033 19038
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 19033-19038
-
-
Han, K.Y.1
Leslie, B.J.2
Fei, J.3
Zhang, J.4
Ha, T.5
-
6
-
-
84904731281
-
A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore
-
H. Huang, N.B. Suslov, N.S. Li, S.A. Shelke, M.E. Evans, Y. Koldobskaya, P.A. Rice, and J.A. Piccirilli A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore Nat. Chem. Biol. 10 2014 686 691
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 686-691
-
-
Huang, H.1
Suslov, N.B.2
Li, N.S.3
Shelke, S.A.4
Evans, M.E.5
Koldobskaya, Y.6
Rice, P.A.7
Piccirilli, J.A.8
-
7
-
-
84899694169
-
Targeted disruption of beta-arrestin 2-mediated signaling pathways by aptamer chimeras leads to inhibition of leukemic cell growth
-
J.W. Kotula, J. Sun, M. Li, E.D. Pratico, M.P. Fereshteh, D.P. Ahrens, B.A. Sullenger, and J.J. Kovacs Targeted disruption of beta-arrestin 2-mediated signaling pathways by aptamer chimeras leads to inhibition of leukemic cell growth PLoS One 9 2014 e93441
-
(2014)
PLoS One
, vol.9
, pp. e93441
-
-
Kotula, J.W.1
Sun, J.2
Li, M.3
Pratico, E.D.4
Fereshteh, M.P.5
Ahrens, D.P.6
Sullenger, B.A.7
Kovacs, J.J.8
-
8
-
-
29844453234
-
Topology of three-way junctions in folded RNAs
-
A. Lescoute, and E. Westhof Topology of three-way junctions in folded RNAs RNA 12 2006 83 93
-
(2006)
RNA
, vol.12
, pp. 83-93
-
-
Lescoute, A.1
Westhof, E.2
-
9
-
-
77951668692
-
Specific high-affinity binding of thiazole orange to triplex and G-quadruplex DNA
-
I. Lubitz, D. Zikich, and A. Kotlyar Specific high-affinity binding of thiazole orange to triplex and G-quadruplex DNA Biochemistry 49 2010 3567 3574
-
(2010)
Biochemistry
, vol.49
, pp. 3567-3574
-
-
Lubitz, I.1
Zikich, D.2
Kotlyar, A.3
-
10
-
-
0036665592
-
Optimizing aptamer activity for gene therapy applications using expression cassette SELEX
-
R.E. Martell, J.R. Nevins, and B.A. Sullenger Optimizing aptamer activity for gene therapy applications using expression cassette SELEX Mol. Ther. 6 2002 30 34
-
(2002)
Mol. Ther.
, vol.6
, pp. 30-34
-
-
Martell, R.E.1
Nevins, J.R.2
Sullenger, B.A.3
-
11
-
-
0035094698
-
The final cut. The importance of tRNA 3′-processing
-
M. Morl, and A. Marchfelder The final cut. The importance of tRNA 3′-processing EMBO Rep. 2 2001 17 20
-
(2001)
EMBO Rep.
, vol.2
, pp. 17-20
-
-
Morl, M.1
Marchfelder, A.2
-
12
-
-
79955517599
-
A cytoplasmic complex mediates specific mRNA recognition and localization in yeast
-
M. Muller, R.G. Heym, A. Mayer, K. Kramer, M. Schmid, P. Cramer, H. Urlaub, R.P. Jansen, and D. Niessing A cytoplasmic complex mediates specific mRNA recognition and localization in yeast PLoS Biol. 9 2011 e1000611
-
(2011)
PLoS Biol.
, vol.9
, pp. e1000611
-
-
Muller, M.1
Heym, R.G.2
Mayer, A.3
Kramer, K.4
Schmid, M.5
Cramer, P.6
Urlaub, H.7
Jansen, R.P.8
Niessing, D.9
-
13
-
-
79960959180
-
RNA mimics of green fluorescent protein
-
J.S. Paige, K.Y. Wu, and S.R. Jaffrey RNA mimics of green fluorescent protein Science 333 2011 642 646
-
(2011)
Science
, vol.333
, pp. 642-646
-
-
Paige, J.S.1
Wu, K.Y.2
Jaffrey, S.R.3
-
14
-
-
0037301586
-
Localized expression of small RNA inhibitors in human cells
-
C.P. Paul, P.D. Good, S.X. Li, A. Kleihauer, J.J. Rossi, and D.R. Engelke Localized expression of small RNA inhibitors in human cells Mol. Ther. 7 2003 237 247
-
(2003)
Mol. Ther.
, vol.7
, pp. 237-247
-
-
Paul, C.P.1
Good, P.D.2
Li, S.X.3
Kleihauer, A.4
Rossi, J.J.5
Engelke, D.R.6
-
15
-
-
77956276464
-
TRNA biology charges to the front
-
E.M. Phizicky, and A.K. Hopper tRNA biology charges to the front Genes Dev. 24 2010 1832 1860
-
(2010)
Genes Dev.
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
16
-
-
34547659860
-
Recombinant RNA technology: The tRNA scaffold
-
L. Ponchon, and F. Dardel Recombinant RNA technology: the tRNA scaffold Nat. Methods 4 2007 571 576
-
(2007)
Nat. Methods
, vol.4
, pp. 571-576
-
-
Ponchon, L.1
Dardel, F.2
-
17
-
-
84883480063
-
Co-expression of RNA-protein complexes in Escherichia coli and applications to RNA biology
-
L. Ponchon, M. Catala, B. Seijo, M. El Khouri, F. Dardel, S. Nonin-Lecomte, and C. Tisne Co-expression of RNA-protein complexes in Escherichia coli and applications to RNA biology Nucleic Acids Res. 41 2013 e150
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. e150
-
-
Ponchon, L.1
Catala, M.2
Seijo, B.3
El Khouri, M.4
Dardel, F.5
Nonin-Lecomte, S.6
Tisne, C.7
-
18
-
-
84896951733
-
The spinach RNA aptamer as a characterization tool for synthetic biology
-
G. Pothoulakis, F. Ceroni, B. Reeve, and T. Ellis The spinach RNA aptamer as a characterization tool for synthetic biology ACS Synth. Biol. 3 2014 182 187
-
(2014)
ACS Synth. Biol.
, vol.3
, pp. 182-187
-
-
Pothoulakis, G.1
Ceroni, F.2
Reeve, B.3
Ellis, T.4
-
19
-
-
84899817285
-
Thioflavin T as a fluorescence light-up probe for G4 formation
-
A. Renaud de la Faverie, A. Guedin, A. Bedrat, L.A. Yatsunyk, and J.L. Mergny Thioflavin T as a fluorescence light-up probe for G4 formation Nucleic Acids Res. 42 2014 e65
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e65
-
-
De La Faverie, A.R.1
Guedin, A.2
Bedrat, A.3
Yatsunyk, L.A.4
Mergny, J.L.5
-
20
-
-
0037108150
-
Recruitment of RNA polymerase III to its target promoters
-
L. Schramm, and N. Hernandez Recruitment of RNA polymerase III to its target promoters Genes Dev. 16 2002 2593 2620
-
(2002)
Genes Dev.
, vol.16
, pp. 2593-2620
-
-
Schramm, L.1
Hernandez, N.2
-
21
-
-
0033764406
-
RNA aptamers as pathway-specific MAP kinase inhibitors
-
S.D. Seiwert, T. Stines Nahreini, S. Aigner, N.G. Ahn, and O.C. Uhlenbeck RNA aptamers as pathway-specific MAP kinase inhibitors Chem. Biol. 7 2000 833 843
-
(2000)
Chem. Biol.
, vol.7
, pp. 833-843
-
-
Seiwert, S.D.1
Stines Nahreini, T.2
Aigner, S.3
Ahn, N.G.4
Uhlenbeck, O.C.5
-
22
-
-
84893335635
-
Programmable folding of fusion RNA in vivo and in vitro driven by pRNA 3WJ motif of phi29 DNA packaging motor
-
D. Shu, E.F. Khisamutdinov, L. Zhang, and P. Guo Programmable folding of fusion RNA in vivo and in vitro driven by pRNA 3WJ motif of phi29 DNA packaging motor Nucleic Acids Res. 42 2014 e10
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e10
-
-
Shu, D.1
Khisamutdinov, E.F.2
Zhang, L.3
Guo, P.4
-
23
-
-
84893461417
-
Plug-and-play fluorophores extend the spectral properties of Spinach
-
W. Song, R.L. Strack, N. Svensen, and S.R. Jaffrey Plug-and-play fluorophores extend the spectral properties of Spinach J. Am. Chem. Soc. 136 2014 1198 1201
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 1198-1201
-
-
Song, W.1
Strack, R.L.2
Svensen, N.3
Jaffrey, S.R.4
-
24
-
-
34548551398
-
SELEX - A (r)evolutionary method to generate high-affinity nucleic acid ligands
-
R. Stoltenburg, C. Reinemann, and B. Strehlitz SELEX-a (r)evolutionary method to generate high-affinity nucleic acid ligands Biomol. Eng. 24 2007 381 403
-
(2007)
Biomol. Eng.
, vol.24
, pp. 381-403
-
-
Stoltenburg, R.1
Reinemann, C.2
Strehlitz, B.3
-
25
-
-
84888883550
-
A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat RNA
-
R.L. Strack, M.D. Disney, and S.R. Jaffrey A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat RNA Nat. Methods 10 2013 1219 1224
-
(2013)
Nat. Methods
, vol.10
, pp. 1219-1224
-
-
Strack, R.L.1
Disney, M.D.2
Jaffrey, S.R.3
-
26
-
-
0033559581
-
Characterization of SYBR Gold nucleic acid gel stain: A dye optimized for use with 300-nm ultraviolet transilluminators
-
R.S. Tuma, M.P. Beaudet, X. Jin, L.J. Jones, C.Y. Cheung, S. Yue, and V.L. Singer Characterization of SYBR Gold nucleic acid gel stain: a dye optimized for use with 300-nm ultraviolet transilluminators Anal. Biochem. 268 1999 278 288
-
(1999)
Anal. Biochem.
, vol.268
, pp. 278-288
-
-
Tuma, R.S.1
Beaudet, M.P.2
Jin, X.3
Jones, L.J.4
Cheung, C.Y.5
Yue, S.6
Singer, V.L.7
-
27
-
-
84905639191
-
Structural basis for activity of highly efficient RNA mimics of green fluorescent protein
-
K.D. Warner, M.C. Chen, W. Song, R.L. Strack, A. Thorn, S.R. Jaffrey, and A.R. Ferre-D'Amare Structural basis for activity of highly efficient RNA mimics of green fluorescent protein Nat. Struct. Mol. Biol. 21 2014 658 663
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 658-663
-
-
Warner, K.D.1
Chen, M.C.2
Song, W.3
Strack, R.L.4
Thorn, A.5
Jaffrey, S.R.6
Ferre-D'Amare, A.R.7
-
28
-
-
34547639506
-
Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast
-
J.E. Weigand, and B. Suess Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast Nucleic Acids Res. 35 2007 4179 4185
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4179-4185
-
-
Weigand, J.E.1
Suess, B.2
-
29
-
-
56349113455
-
3′ end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA
-
J.E. Wilusz, S.M. Freier, and D.L. Spector 3′ end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA Cell 135 2008 919 932
-
(2008)
Cell
, vol.135
, pp. 919-932
-
-
Wilusz, J.E.1
Freier, S.M.2
Spector, D.L.3
-
30
-
-
84868152631
-
Long noncoding RNAs with snoRNA ends
-
Q.F. Yin, L. Yang, Y. Zhang, J.F. Xiang, Y.W. Wu, G.G. Carmichael, and L.L. Chen Long noncoding RNAs with snoRNA ends Mol. Cell 48 2012 219 230
-
(2012)
Mol. Cell
, vol.48
, pp. 219-230
-
-
Yin, Q.F.1
Yang, L.2
Zhang, Y.3
Xiang, J.F.4
Wu, Y.W.5
Carmichael, G.G.6
Chen, L.L.7
-
31
-
-
63449140909
-
Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green
-
X. Zhang, A.S. Potty, G.W. Jackson, V. Stepanov, A. Tang, Y. Liu, K. Kourentzi, U. Strych, G.E. Fox, and R.C. Willson Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green J. Mol. Recognit. 22 2009 154 161
-
(2009)
J. Mol. Recognit.
, vol.22
, pp. 154-161
-
-
Zhang, X.1
Potty, A.S.2
Jackson, G.W.3
Stepanov, V.4
Tang, A.5
Liu, Y.6
Kourentzi, K.7
Strych, U.8
Fox, G.E.9
Willson, R.C.10
-
32
-
-
84883203974
-
Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA
-
H. Zhang, J.A. Endrizzi, Y. Shu, F. Haque, C. Sauter, L.S. Shlyakhtenko, Y. Lyubchenko, P. Guo, and Y.I. Chi Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA RNA 19 2013 1226 1237
-
(2013)
RNA
, vol.19
, pp. 1226-1237
-
-
Zhang, H.1
Endrizzi, J.A.2
Shu, Y.3
Haque, F.4
Sauter, C.5
Shlyakhtenko, L.S.6
Lyubchenko, Y.7
Guo, P.8
Chi, Y.I.9
|