Genetic and morphological differentiation in Populus nigra L.: isolation by colonization or isolation by adaptation?

Molecular Ecology

Volumn 24, Issue 11, 2015, Pages 2641-2655

  Dewoody, Jennifer ^a,b   Trewin, Harriet ^a,c   Taylor, Gail ^a  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

^b USDA FOREST SERVICE   (United States)

^c INSTITUTE OF FOOD RESEARCH   (United Kingdom)

Author keywords

biomass; common garden experiment; European black poplar; leaf size; microsatellites

Indexed keywords

POPULUS NIGRA;

MICROSATELLITE DNA;

ADAPTATION; ANATOMY AND HISTOLOGY; CLIMATE; ECOTYPE; EUROPE; GENE POOL; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; PHENOTYPE; POPULATION GENETICS; POPULUS; QUANTITATIVE TRAIT;

ADAPTATION, PHYSIOLOGICAL; CLIMATE; ECOTYPE; EUROPE; EVOLUTION, MOLECULAR; GENE POOL; GENETIC VARIATION; GENETICS, POPULATION; MICROSATELLITE REPEATS; PHENOTYPE; POPULUS; QUANTITATIVE TRAIT, HERITABLE;

EID: 84930086746     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.13192     Document Type: Article

References (77)

1. Antonovics J, (1968) Evolution in closely adjacent plant populations VI. Manifold effects of gene flow. Heredity, 23, 508-524.
2. Blenkinsop S, Fowler HJ, (2007) Changes in European drought characteristics projected by the PRUDENCE regional climate models. International Journal of Climatology, 27, 1595-1610.
3. Bock DG, Andrew RL, Rieseberg L, (2014) On the adaptive value of cytoplasmic genomes in plants. Molecular Ecology, 23, 4899-4911.
4. Brown AHD, (1978) Isozymes, plant population genetic structure and genetic conservation. Theoretical and Applied Genetics, 52, 145-157.
5. Cavers S, Navarro C, Lowe AJ, (2004) Targeting genetic resource conservation in widespread species: a case study of Cedrela odorata L. Forest Ecology and Management, 197, 285-294.
6. Cottrell JE, Krystufek V, Tabbener HE, et al,. (2005) Postglacial migration of Populus nigra L.: lessons learnt from chloroplast DNA. Forest Ecology and Management, 206, 71-90.
7. De Kort H, Vandepitte K, Bruun HH, et al,. (2014) Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree species Alnus glutinosa. Molecular Ecology, 23, 4709-4721.
8. Dennison MD, Baker AJ, (1991) Morphometric variability in Continental and Atlantic Island Populations of Chaffinches (Fringilla coelebs). Evolution, 45, 29-39.
9. DeWoody J, Nason JD, Hipkins VD, (2006) Mitigating scoring errors in microsatellite data from wild populations. Molecular Ecology Notes, 6, 951-957.
10. Dudley SA, (1996a) Differing selection on plant physiological traits in response to environmental water availability: a test of adaptive hypotheses. Evolution, 50, 92-102.
11. Dudley SA, (1996b) The response to differing selection on plant physiological traits: evidence for local adaptation. Evolution, 50, 103-110.
12. Duminil J, Fineschi S, Hampe A, et al,. (2007) Can population genetic structure be predicted from life-history traits? American Naturalist, 169, 662-672.
13. Earl DA, vonHoldt BM, (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources, 4, 359-361.
14. Eckert CG, Manicacci D, Barrett SCH, (1996) Genetic drift and founder effect in native versus introduced populations of an invading plant, Lythrum salicaria (Lythraceae). Evolution, 50, 1512-1519.
15. Evanno G, Regnaut S, Goudet J, (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
16. Fabbrini F, Gaudet M, Bastien C, et al,. (2012) Phenotypic plasticity, QTL mapping and genomic characterization of bud set in black poplar. BMC Plant Biology, 12, 47.
17. Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure: extensions to linked loci and correlated allele frequencies. Genetics, 164, 1567-1587.
18. Fossati T, Grassi F, Sala F, Castiglione S, (2003) Molecular analysis of natural populations of Populus nigra L. intermingled with cultivated hybrids. Molecular Ecology, 12, 2033-2043.
19. Gailing O, Lind J, Lilleskov E, (2012) Leaf morphological and genetic differentiation between Quercus rubra L. and Q. ellipsoidalis E.J. Hill populations in contrasting environments. Plant Systematics and Evolution, 298, 1533-1545.
20. Gessler A, Keitel C, Kreuzwieser J, et al,. (2007) Potential risks for European beech (Fagus sylvatica L.) in a changing climate. Trees-Structure and Function, 21, 1-11.
21. Hall D, Luquez V, Garcia VM, et al,. (2007) Adaptive population differentiation in phenology across a latitudinal gradient in European aspen (Populus tremula, L.): a comparison of neutral markers, candidate genes and phenotypic traits. Evolution, 61, 2849-2860.
22. Hamrick JL, Godt MJW, (1996) Effects of life history traits on genetic diversity in plant species. Philosophical Transactions of the Royal Society B-Biological Sciences, 351, 1291-1298.
23. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A, (2005) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25, 1965-1978.
24. Hu X-S, He F, (2006) Seed and pollen flow in expanding a species' range. Journal of Theoretical Biology, 240, 662-672.
25. Jensen JL, Bohonak AJ, Kelley ST, (2005) Isolation by distance, web service. BMC Genetics, 6, 13.
26. Kawecki TJ, Evert D, (2004) Conceptual issues in local adaptation. Ecology Letters, 7, 1225-1241.
27. Kelly CK, Chase MW, De Bruijn A, Fay MF, Woodward FI, (2003) Temperature-based population segregation in birch. Ecology Letters, 6, 87-89.
28. Kremer A, Kleinschmit J, Cottrell J, et al,. (2002) Is there a correlation between chloroplastic and nuclear divergence, or what are the roles of history and selection on genetic diversity in European oaks? Forest Ecology and Management, 156, 75-87.
29. Kremer A, Ronce O, Robledo-Arnuncio JJ, et al,. (2012) Long-distance gene flow and adaptation of forest trees to rapid climate change. Ecology Letters, 15, 378-392.
30. LeCorre V, Kremer A, (2003) Genetic variability at neutral markers, quantitative trait loci and trait in a subdivided population under selection. Genetics, 164, 1205-1219.
31. Leinonen T, McCairns RJS, O'Hara RB, Merila J, (2013) Qst-Fst comparisons: evolutionary and ecological insights from genomic heterogeneity. Nature Reviews Genetics, 14, 179-190.
32. Loveless MD, Hamrick JL, (1984) Ecological determinants of genetic structure in plant populations. Annual Review of Ecology and Systematics, 15, 65-95.
33. Luikart G, Cornuet J-M, (1998) Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conservation Biology, 12, 228-237.
34. Luikart G, Sherwin WB, Steele BM, Allendorf FW, (1998) Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change. Molecular Ecology, 7, 963-974.
35. Manly BFJ, (1997) Randomization, Bootstrap and Monte Carlo Methods in Biology, 2nd edn. Chapman & Hall, London.
36. McKay JK, Latta RG, (2002) Adaptive population divergence: markers, QTL and traits. Trends in Ecology & Evolution, 17, 285-291.
37. McKown AD, Guy RD, Klapste J, et al,. (2014) Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa. New Phytologist, 201, 1263-1276.
38. Merila J, Crnokrak P, (2001) Comparison of genetic differentiation at marker loci and quantitative traits. Journal of Evolutionary Biology, 14, 892-903.
39. Mitton JB, Duran KL, (2004) Genetic variation in piñon pine, Pinus edulis, associated with summer precipitation. Molecular Ecology, 13, 1259-1264.
40. Moya-Larano J, Corcobado G, (2008) Plotting partial correlation and regression in ecological studies. Web Ecology, 8, 35-46.
41. Nason JD, Hamrick JL, Fleming TH, (2002) Historical vicariance and postglacial colonization effects on the evolution of genetic structure in Lophocereus, a Sonoran desert columnar cactus. Evolution, 56, 2214-2226.
42. Nosil P, Funk DJ, Ortiz-Barrientos D, (2009) Divergent selection and heterogeneous genomic divergence. Molecular Ecology, 18, 375-402.
43. Ohlemuller R, Gritti ES, Sykes MT, Thomas CD, (2006) Towards European climate risk surfaces: the extent and distribution of analogous and non-analogous climates 1931-2100. Global Ecology and Biogeography, 15, 395-405.
44. van Oosterhout C, Hutchinson WF, Willis DPM, Shipley P, (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
45. Orsini L, Corander J, Alasentie A, Hanski I, (2008) Genetic spatial structure in a butterfly metapopulation correlates better with past than present demographic structure. Molecular Ecology, 17, 2629-2642.
46. Orsini L, Vanoverbeke J, Swillen I, Mergeay J, De Meester L, (2013) Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization. Molecular Ecology, 22, 5983-5999.
47. Palme AE, Su Q, Rautenberg A, Manni F, Lascoux M, (2003) Postglacial recolonization and cpDNA variation of silver birch, Betula pendula. Molecular Ecology, 12, 201-212.
48. Peakall R, Smouse PE, (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
49. Peakall R, Smouse PE, Huff DR, (1995) Evolutionary implications of allozyme and RAPD variation in diploid populations of dioecious buffalograss Buchloë dactyloides. Molecular Ecology, 4, 135-147.
50. Penuelas J, Prieto P, Beier C, et al,. (2007) Response of plant species richness and primary productivity in shrublands along a north-south gradient in Europe to seven years of experimental warming and drought: reductions in primary productivity in the heat and drought year of 2003. Global Change Biology, 13, 2563-2581.
51. Petit RJ, Csaikl UM, Bordacs S, et al,. (2002) Chloroplast DNA variation in European white oaks-Phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecology and Management, 156, 5-26.
52. Petit RJ, Aguinagalde I, de Beaulieu JL, et al,. (2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science, 300, 1563-1565.
53. Picotte J, Rosenthal D, Rhode J, Cruzan M, (2007) Plastic responses to temporal variation in moisture availability: consequences for water use efficiency and plant performance. Oecologia, 153, 821-832.
54. Poorter H, Niinemets Ü, Poorter L, Wright IJ, Villar R, (2009) Causes and consequences of variation in leaf mass per area (LMA): a meta-analysis. New Phytologist, 182, 565-588.
55. Pritchard JK, Stephens M, Donnelley P, (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
56. Raible CC, Casty C, Luterbacher J, et al,. (2006) Climate variability-observations, reconstructions, and model simulations for the Atlantic-European and Alpine region from 1500-2100 AD. Climatic Change, 79, 9-29.
57. Rohde A, Storme V, Jorge V, et al,. (2011) Bud set in poplar-genetic dissection of a complex trait in natural and hybrid populations. New Phytologist, 189, 106-121.
58. Rousset F, (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
59. Royer DL, McElwain JC, Adams JM, Wilf P, (2008) Sensitivity of leaf size and shape to climate within Acer rubrum and Quercus kelloggii. New Phytologist, 179, 808-817.
60. Salmela MJ, (2014) Rethinking local adaptaiton: mind the environment!. Forest Ecology and Management, 312, 271-281.
61. Savolainen O, Pyhajarvi T, (2007) Genomic diversity in forest trees. Current Opinion in Plant Biology, 10, 162-167.
62. Savolainen O, Lascoux M, Merlia J, (2013) Ecological genomics of local adaptation. Nature Reviews Genetics, 14, 807-820.
63. Slatkin M, (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
64. Smouse PE, Peakall R, (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity, 82, 561-573.
65. Smouse PE, Long JC, Sokal RR, (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systematic Zoology, 35, 627-632.
66. Smulders MJM, van der Schoot J, Arens P, Vosman B, (2001) Trinucleotide repeat microsatellite markers for black poplar (Populus nigra L.). Molecular Ecology Notes, 1, 188-190.
67. Smulders MJM, Cottrell JE, Lefevre F, et al,. (2008) Structure of the genetic diversity in black poplar (Populus nigra L.) populations across European river systems: consequences for conservation and restoration. Forest Ecology and Management, 255, 1388-1399.
68. Sork VL, Davis FW, Westfall R, et al,. (2010) Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change. Molecular Ecology, 19, 3806-3823.
69. Spurgin LG, Illera JC, Jorgensen TH, Dawson DA, Richardson DS, (2014) Genetic and phenotypic divergence in an island bird: isolation by distance, by colonization, or by adaptation? Molecular Ecology, 23, 1028-1039.
70. Steane D, Conod N, Jones R, Vaillancourt R, Potts B, (2006) A comparative analysis of population structure of a forest tree, Eucalyptus globulus (Myrtaceae), using microsatellite markers and quantitative traits. Tree Genetics & Genomes, 2, 30-38.
71. Turesson G, (1922) The genotypical response of the plant species to the habitat. Hereditas, 3, 211-350.
72. Tzedakis PC, Emerson BC, Hewitt GM, (2013) Cryptic or mystic? Glacial tree refugia in northern Europe. Trends in Ecology & Evolution, 28, 696-704.
73. Vendramin GG, Anzidei M, Madaghiele A, Sperisen C, Bucci G, (2000) Chloroplast microsatellite analysis reveals the presence of population subdivision in Norway spruce (Picea abies K.). Genome, 43, 68-78.
74. Viger M, (2011) Physiology, genetics and genomics of drought adaptation in Populus. Doctoral Thesis, University of Southampton, Centre for Biological Sciences, Southampton, UK. 258 pp.
75. Westoby M, Wright IJ, (2006) Land-plant ecology on the basis of functional traits. Trends in Ecology & Evolution, 21, 261-268.
76. Wright S, (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
77. Yang X-D, Yan E-R, Chang SX, et al,. (2014) Twig-leaf size relationships in woody plants vary intraspecifically along a soil moisture gradient. Acta Oecologica, 60, 17-25.