Development of multiplex mass spectrometric immunoassay for detection and quantification of apolipoproteins C-I, C-II, C-III and their proteoforms

Methods

Volumn 81, Issue , 2015, Pages 86-92

  Trenchevska, Olgica ^a   Schaab, Matthew R ^a   Nelson, Randall W ^a   Nedelkov, Dobrin ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Apolipoprotein C I, C II, C III; Biomarkers; Mass spectrometric immunoassay; Proteoforms; Quantification

Indexed keywords

APOLIPOPROTEIN C1; APOLIPOPROTEIN C2; APOLIPOPROTEIN C3; ISOPROTEIN;

ARTICLE; BLOOD SAMPLING; COHORT ANALYSIS; CONTROLLED STUDY; FUCOSYLATION; HUMAN; IMMUNOASSAY; MASS SPECTROMETRIC IMMUNOASSAY; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEOMICS; QUANTITATIVE ANALYSIS; BLOOD; METABOLISM; PROCEDURES; PROTEIN PROCESSING;

APOLIPOPROTEIN C-I; APOLIPOPROTEIN C-II; APOLIPOPROTEIN C-III; HUMANS; IMMUNOASSAY; MASS SPECTROMETRY; PROTEIN ISOFORMS; PROTEIN PROCESSING, POST-TRANSLATIONAL;

EID: 84930077216     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2015.02.020     Document Type: Article

References (51)

1. Smith L.M., Kelleher N.L. Nat. Methods 2013, 10:186-187.
2. Nelson R.W., Krone J.R., Bieber A.L., Williams P. Anal. Chem. 1995, 67:1153-1158.
3. Nelson R.W., Borges C.R. J. Am. Soc. Mass Spectrom. 2011, 22:960-968.
4. Issaq H.J., Veenstra T.D., Conrads T.P., Felschow D. Biochem. Biophys. Res. Commun. 2002, 292:587-592.
5. Anderson N.L., Anderson N.G., Haines L.R., Hardie D.B., Olafson R.W., Pearson T.W. J. Proteome Res. 2004, 3:235-244.
6. Razavi M., Frick L.E., LaMarr W.A., Pope M.E., Miller C.A., Anderson N.L., Pearson T.W. J. Proteome Res. 2012, 11:5642-5649.
7. Reid J.D., Holmes D.T., Mason D.R., Shah B., Borchers C.H. J. Am. Soc. Mass Spectrom. 2010, 21:1680-1686.
8. Mann M. Nat. Rev. Mol. Cell Biol. 2006, 7:952-958.
9. Messana I., Cabras T., Iavarone F., Vincenzoni F., Urbani A., Castagnola M. J. Sep. Sci. 2013, 36:128-139.
10. Weiß F., van den Berg B.H., Planatscher H., Pynn C.J., Joos T.O., Poetz O. Biochim. Biophys. Acta 2014, 1844:927-932.
11. Nedelkov D., Tubbs K.A., Niederkofler E.E., Kiernan U.A., Nelson R.W. Anal. Chem. 2004, 76:1733-1737.
12. Nedelkov D., Kiernan U.A., Niederkofler E.E., Tubbs K.A., Nelson R.W. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:10852-10857.
13. Nedelkov D., Phillips D.A., Tubbs K.A., Nelson R.W. Mol. Cell. Proteomics 2007, 6:1183-1187.
14. Trenchevska O., Phillips D.A., Nelson R.W., Nedelkov D. PLoS One 2014, 9:e100713.
15. Oran P.E., Trenchevska O., Nedelkov D., Borges C.R., Schaab M.R., Rehder D.S., Jarvis J.W., Sherma N.D., Shen L., Krastins B., Lopez M.F., Schwenke D.C., Reaven P.D., Nelson R.W. PLoS One 2014, 9:e92801.
16. Niederkofler E.E., Phillips D.A., Krastins B., Kulasingam V., Kiernan U.A., Tubbs K.A., Peterman S.M., Prakash A., Diamandis E.P., Lopez M.F., Nedelkov D. PLoS One 2013, 8:e81125.
17. Trenchevska O., Kamcheva E., Nedelkov D. J. Proteome Res. 2010, 9:5969-5973.
18. Trenchevska O., Nedelkov D. Proteome Sci. 2011, 9:19.
19. Trenchevska O., Kamcheva E., Nedelkov D. Proteomics 2011, 11:3633-3641.
20. Kiernan U.A., Phillips D.A., Trenchevska O., Nedelkov D. PLoS One 2011, 6:e17282.
21. Sherma N.D., Borges C.R., Trenchevska O., Jarvis J.W., Rehder D.S., Oran P.E., Nelson R.W., Nedelkov D. Proteome Sci. 2014, 12:52.
22. Kiernan U.A., Nedelkov D., Nelson R.W. J. Proteome Res. 2006, 5:2928-2934.
23. Kiernan U.A., Addobbati R., Nedelkov D., Nelson R.W. J. Proteome Res. 2006, 5:1682-1687.
24. Jong M.C., Hofker M.H., Havekes L.M. Arterioscler. Thromb. Vasc. Biol. 1999, 19:472-484.
25. Kei A.A., Filippatos T.D., Tsimihodimos V., Elisaf M.S. Metabolism 2012, 61:906-921.
26. Zheng C., Khoo C., Furtado J., Sacks F.M. Circulation 2010, 121:1722-1734.
27. Hegele R.A., Connelly P.W., Hanley A.J.G., Sun F., Harris S.B., Zinman B. Arteriosclerosis Thrombosis Vasc. Biol. 1997, 17:2753-2758.
28. Jørgensen A.B., Frikke-Schmidt R., Nordestgaard B.G., Tybjærg-Hansen A. N. Engl. J. Med. 2014, 371:32-41.
29. Crosby J., Peloso G.M., Auer P.L., Crosslin D.R., Stitziel N.O., Lange L.A., Lu Y., Tang Z.Z., Zhang H., Hindy G., Masca N., Stirrups K., Kanoni S., Do R., Jun G., Hu Y., Kang H.M., Xue C., Goel A., Farrall M., Duga S., Merlini P.A., Asselta R., Girelli D., Olivieri O., Martinelli N., Yin W., Reilly D., Speliotes E., Fox C.S., Hveem K., Holmen O.L., Nikpay M., Farlow D.N., Assimes T.L., Franceschini N., Robinson J., North K.E., Martin L.W., DePristo M., Gupta N., Escher S.A., Jansson J.H., Van Zuydam N., Palmer C.N., Wareham N., Koch W., Meitinger T., Peters A., Lieb W., Erbel R., Konig I.R., Kruppa J., Degenhardt F., Gottesman O., Bottinger E.P., O'Donnell C.J., Psaty B.M., Ballantyne C.M., Abecasis G., Ordovas J.M., Melander O., Watkins H., Orho-Melander M., Ardissino D., Loos R.J., McPherson R., Willer C.J., Erdmann J., Hall A.S., Samani N.J., Deloukas P., Schunkert H., Wilson J.G., Kooperberg C., Rich S.S., Tracy R.P., Lin D.Y., Altshuler D., Gabriel S., Nickerson D.A., Jarvik G.P., Cupples L.A., Reiner A.P., Boerwinkle E., Kathiresan S. N. Engl. J. Med. 2014, 371:22-31. N.H. TG and HDL Working Group of the Exome Sequencing Project, L.ng, and Blood Institute.
30. Huff M.W., Hegele R.A. Circ. Res. 2013, 112:1405-1408.
31. Graham M.J., Lee R.G., Bell T.A., Fu W., Mullick A.E., Alexander V.J., Singleton W., Viney N., Geary R., Su J., Baker B.F., Burkey J., Crooke S.T., Crooke R.M. Circ. Res. 2013, 112:1479-1490.
32. Bondarenko P.V., Cockrill S.L., Watkins L.K., Cruzado I.D., Macfarlane R.D. J. Lipid Res. 1999, 40:543-555.
33. Nicolardi S., van der Burgt Y.E., Wuhrer M., Deelder A.M. Proteomics 2013, 13:992-1001.
34. Wada Y., Kadoya M., Okamoto N. Glycobiology 2012, 22:1140-1144.
35. Flood-Nichols S.K., Tinnemore D., Wingerd M.A., Abu-Alya A.I., Napolitano P.G., Stallings J.D., Ippolito D.L. Mol. Cell. Proteomics 2013, 12:55-64.
36. Rezeli M., Végvári Á., Donnarumma F., Gidlöf O., Smith J.G., Erlinge D., Marko-Varga G. J. Proteomics 2013, 87:16-25.
37. Jian W., Edom R.W., Wang D., Weng N., Zhang S.W. Anal. Chem. 2013, 85:2867-2874.
38. Kingsmore S.F. Nat. Rev. Drug Discov. 2006, 5:310-320.
39. Peterman S., Niederkofler E.E., Phillips D.A., Krastins B., Kiernan U.A., Tubbs K.A., Nedelkov D., Prakash A., Vogelsang M.S., Schoeder T., Couchman L., Taylor D.R., Moniz C.F., Vadali G., Byram G., Lopez M.F. Proteomics 2014, 14:1445-1456.
40. Kuhn E., Addona T., Keshishian H., Burgess M., Mani D.R., Lee R.T., Sabatine M.S., Gerszten R.E., Carr S.A. Clin. Chem. 2009, 55:1108-1117.
41. Keshishian H., Addona T., Burgess M., Kuhn E., Carr S.A. Mol. Cell. Proteomics 2007, 6:2212-2229.
42. Chapman J.D., Goodlett D.R., Masselon C.D. Mass Spectrom. Rev. 2014, 33:452-470.
43. Augustyns K., Bal G., Thonus G., Belyaev A., Zhang X.M., Bollaert W., Lambeir A.M., Durinx C., Goossens F., Haemers A. Curr. Med. Chem. 1999, 6:311-327.
44. Lambeir A.M., Durinx C., Scharpé S., De Meester I. Crit. Rev. Clin. Lab. Sci. 2003, 40:209-294.
45. Fojo S.S., Taam L., Fairwell T., Ronan R., Bishop C., Meng M.S., Hoeg J.M., Sprecher D.L., Brewer H.B. J. Biol. Chem. 1986, 261:9591-9594.
46. Carr S.A., Abbatiello S.E., Ackermann B.L., Borchers C., Domon B., Deutsch E.W., Grant R.P., Hoofnagle A.N., Hüttenhain R., Koomen J.M., Liebler D.C., Liu T., MacLean B., Mani D.R., Mansfield E., Neubert H., Paulovich A.G., Reiter L., Vitek O., Aebersold R., Anderson L., Bethem R., Blonder J., Boja E., Botelho J., Boyne M., Bradshaw R.A., Burlingame A.L., Chan D., Keshishian H., Kuhn E., Kinsinger C., Lee J.S., Lee S.W., Moritz R., Oses-Prieto J., Rifai N., Ritchie J., Rodriguez H., Srinivas P.R., Townsend R.R., Van Eyk J., Whiteley G., Wiita A., Weintraub S. Mol. Cell. Proteomics 2014, 13:907-917.
47. Pratley R.E., Salsali A. Curr. Med. Res. Opin. 2007, 23:919-931.
48. Barnett A. Int. J. Clin. Pract. 2006, 60:1454-1470.
49. Goldberg I.J., Scheraldi C.A., Yacoub L.K., Saxena U., Bisgaier C.L. J. Biol. Chem. 1990, 265:4266-4272.
50. Balog C.I., Mayboroda O.A., Wuhrer M., Hokke C.H., Deelder A.M., Hensbergen P.J. Mol. Cell. Proteomics 2010, 9:667-681.
51. Nicolardi S., van der Burgt Y.E., Dragan I., Hensbergen P.J., Deelder A.M. J. Proteome Res. 2013, 12:2260-2268.