-
1
-
-
77954748234
-
The UNITE database for molecular identification of fungi - recent updates and future perspectives
-
Abarenkov K, Nilsson RH, Larsson K, Alexander IJ, Erland S, Høiland K, Kjøller R, Larsson E, Pennanen T, Sen R et al. 2010. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist 186: 281-285.
-
(2010)
New Phytologist
, vol.186
, pp. 281-285
-
-
Abarenkov, K.1
Nilsson, R.H.2
Larsson, K.3
Alexander, I.J.4
Erland, S.5
Høiland, K.6
Kjøller, R.7
Larsson, E.8
Pennanen, T.9
Sen, R.10
-
2
-
-
33846473192
-
Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules
-
Anderson IC, Parkin PI. 2007. Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules. Journal of Microbiological Methods 68: 248-253.
-
(2007)
Journal of Microbiological Methods
, vol.68
, pp. 248-253
-
-
Anderson, I.C.1
Parkin, P.I.2
-
3
-
-
84922929396
-
Local-scale biogeography and spatiotemporal variability in communities of mycorrhizal fungi
-
Bahram M, Peay KG, Tedersoo L. 2015. Local-scale biogeography and spatiotemporal variability in communities of mycorrhizal fungi. New Phytologist 205: 1454-1463.
-
(2015)
New Phytologist
, vol.205
, pp. 1454-1463
-
-
Bahram, M.1
Peay, K.G.2
Tedersoo, L.3
-
4
-
-
77954083670
-
Differential effect of sample preservation methods on plant and arbuscular mycorrhizal fungal DNA
-
Bainard LD, Klironomos JN, Hart MM. 2010. Differential effect of sample preservation methods on plant and arbuscular mycorrhizal fungal DNA. Journal of Microbiological Methods 82: 124-130.
-
(2010)
Journal of Microbiological Methods
, vol.82
, pp. 124-130
-
-
Bainard, L.D.1
Klironomos, J.N.2
Hart, M.M.3
-
5
-
-
0030821424
-
Incorporating the soil community into plant population dynamics: the utility of the feedback approach
-
Bever JD, Westover KM, Antonovics J, Westover M. 1997. Incorporating the soil community into plant population dynamics: the utility of the feedback approach. Journal of Ecology 85: 561-573.
-
(1997)
Journal of Ecology
, vol.85
, pp. 561-573
-
-
Bever, J.D.1
Westover, K.M.2
Antonovics, J.3
Westover, M.4
-
7
-
-
84858617141
-
Sequencing our way towards understanding global eukaryotic biodiversity
-
Bik HM, Porazinska DL, Creer S, Caporaso JG, Knight R, Thomas WK. 2012. Sequencing our way towards understanding global eukaryotic biodiversity. Trends in Ecology & Evolution 27: 233-243.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 233-243
-
-
Bik, H.M.1
Porazinska, D.L.2
Creer, S.3
Caporaso, J.G.4
Knight, R.5
Thomas, W.K.6
-
8
-
-
78649667647
-
High diversity of root associated fungi in both alpine and arctic Dryas octopetala
-
Bjorbækmo MFM, Carlsen T, Brysting A, Vrålstad T, Høiland K, Ugland KI, Geml J, Schumacher T, Kauserud H. 2010. High diversity of root associated fungi in both alpine and arctic Dryas octopetala. BMC Plant Biology 10: 244.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 244
-
-
Bjorbækmo, M.F.M.1
Carlsen, T.2
Brysting, A.3
Vrålstad, T.4
Høiland, K.5
Ugland, K.I.6
Geml, J.7
Schumacher, T.8
Kauserud, H.9
-
9
-
-
84886725824
-
Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
-
Blazewicz SJ, Barnard RL, Daly RA, Firestone MK. 2013. Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. ISME Journal 7: 2061-2068.
-
(2013)
ISME Journal
, vol.7
, pp. 2061-2068
-
-
Blazewicz, S.J.1
Barnard, R.L.2
Daly, R.A.3
Firestone, M.K.4
-
10
-
-
84897730355
-
Sequencing and comparison of the mitochondrial COI gene from isolates of arbuscular mycorrhizal fungi belonging to Gigasporaceae and Glomeraceae families
-
Borriello R, Bianciotto V, Orgiazzi A, Lumini E, Bergero R. 2014. Sequencing and comparison of the mitochondrial COI gene from isolates of arbuscular mycorrhizal fungi belonging to Gigasporaceae and Glomeraceae families. Molecular Phylogenetics and Evolution 75: 1-10.
-
(2014)
Molecular Phylogenetics and Evolution
, vol.75
, pp. 1-10
-
-
Borriello, R.1
Bianciotto, V.2
Orgiazzi, A.3
Lumini, E.4
Bergero, R.5
-
11
-
-
0035983770
-
Functional diversity of arbuscular mycorrhizas extends to the expression of plant genes involved in P nutrition
-
Burleigh SH, Cavagnaro T, Jakobsen I. 2002. Functional diversity of arbuscular mycorrhizas extends to the expression of plant genes involved in P nutrition. Journal of Experimental Botany 53: 1593-1601.
-
(2002)
Journal of Experimental Botany
, vol.53
, pp. 1593-1601
-
-
Burleigh, S.H.1
Cavagnaro, T.2
Jakobsen, I.3
-
12
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI et al. 2010. QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7: 335-336.
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
13
-
-
83155182603
-
Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes
-
de Cárcer DA, Denman SE, McSweeney C, Morrison M. 2011. Evaluation of subsampling-based normalization strategies for tagged high-throughput sequencing data sets from gut microbiomes. Applied and Environmental Microbiology 77: 8795-8798.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, pp. 8795-8798
-
-
de Cárcer, D.A.1
Denman, S.E.2
McSweeney, C.3
Morrison, M.4
-
14
-
-
0033150450
-
Ribosomal small subunit variation within spores of an arbuscular mycorrhizal fungus, Scutellospora sp
-
Clapp JP, Fitter AH, Young JPW. 1999. Ribosomal small subunit variation within spores of an arbuscular mycorrhizal fungus, Scutellospora sp. Molecular Ecology 8: 915-921.
-
(1999)
Molecular Ecology
, vol.8
, pp. 915-921
-
-
Clapp, J.P.1
Fitter, A.H.2
Young, J.P.W.3
-
15
-
-
0028978636
-
Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community
-
Clapp JP, Young JP, Merryweather JW, Fitter AH. 1995. Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community. New Phytologist 130: 259-265.
-
(1995)
New Phytologist
, vol.130
, pp. 259-265
-
-
Clapp, J.P.1
Young, J.P.2
Merryweather, J.W.3
Fitter, A.H.4
-
16
-
-
84922794639
-
Fungi in the future: inter-annual variation and effects of atmospheric change on arbuscular mycorrhizal fungal communities
-
Cotton TEA, Fitter AH, Miller RM, Dumbrell AJ, Helgason T. 2015. Fungi in the future: inter-annual variation and effects of atmospheric change on arbuscular mycorrhizal fungal communities. New Phytologist 205: 1598-1607.
-
(2015)
New Phytologist
, vol.205
, pp. 1598-1607
-
-
Cotton, T.E.A.1
Fitter, A.H.2
Miller, R.M.3
Dumbrell, A.J.4
Helgason, T.5
-
18
-
-
80052635554
-
Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages
-
Davison J, Öpik M, Daniell TJ, Moora M, Zobel M. 2011. Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology 78: 103-115.
-
(2011)
FEMS Microbiology Ecology
, vol.78
, pp. 103-115
-
-
Davison, J.1
Öpik, M.2
Daniell, T.J.3
Moora, M.4
Zobel, M.5
-
19
-
-
84864694016
-
Communities of arbuscular mycorrhizal fungi detected in forest soil are spatially heterogeneous but do not vary throughout the growing season
-
Davison J, Öpik M, Zobel M, Vasar M, Metsis M, Moora M. 2012. Communities of arbuscular mycorrhizal fungi detected in forest soil are spatially heterogeneous but do not vary throughout the growing season. PLoS ONE 7: e41938.
-
(2012)
PLoS ONE
, vol.7
, pp. e41938
-
-
Davison, J.1
Öpik, M.2
Zobel, M.3
Vasar, M.4
Metsis, M.5
Moora, M.6
-
20
-
-
79954752208
-
Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing
-
Dumbrell AJ, Ashton PD, Aziz N, Feng G, Nelson M, Dytham C, Alastair H. 2011. Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing. New Phytologist 190: 794-804.
-
(2011)
New Phytologist
, vol.190
, pp. 794-804
-
-
Dumbrell, A.J.1
Ashton, P.D.2
Aziz, N.3
Feng, G.4
Nelson, M.5
Dytham, C.6
Alastair, H.7
-
21
-
-
77149148775
-
Relative roles of niche and neutral processes in structuring a soil microbial community
-
Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH. 2010. Relative roles of niche and neutral processes in structuring a soil microbial community. ISME Journal 4: 337-345.
-
(2010)
ISME Journal
, vol.4
, pp. 337-345
-
-
Dumbrell, A.J.1
Nelson, M.2
Helgason, T.3
Dytham, C.4
Fitter, A.H.5
-
22
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
23
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
25
-
-
84861371375
-
Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses
-
Fonseca VG, Nichols B, Lallias D, Quince C, Carvalho GR, Power DM, Creer S. 2012. Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses. Nucleic Acids Research 40: e66.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. e66
-
-
Fonseca, V.G.1
Nichols, B.2
Lallias, D.3
Quince, C.4
Carvalho, G.R.5
Power, D.M.6
Creer, S.7
-
26
-
-
84875411396
-
Assessing the consequences of denoising marker-based metagenomic data
-
Gaspar JM, Thomas WK. 2013. Assessing the consequences of denoising marker-based metagenomic data. PLoS ONE 8: e60458.
-
(2013)
PLoS ONE
, vol.8
, pp. e60458
-
-
Gaspar, J.M.1
Thomas, W.K.2
-
27
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E et al. 2011. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Research 21: 494-504.
-
(2011)
Genome Research
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
Ciulla, D.7
Tabbaa, D.8
Highlander, S.K.9
Sodergren, E.10
-
28
-
-
84898734186
-
Arbuscular mycorrhizal fungal succession in a long-lived perennial
-
Hart MM, Gorzelak M, Ragone D, Murch SJ. 2014. Arbuscular mycorrhizal fungal succession in a long-lived perennial. Botany-Botanique 320: 313-320.
-
(2014)
Botany-Botanique
, vol.320
, pp. 313-320
-
-
Hart, M.M.1
Gorzelak, M.2
Ragone, D.3
Murch, S.J.4
-
29
-
-
0036163002
-
Taxonomic basis for variation in the colonization strategy of arbuscular mycorrhizal fungi
-
Hart MM, Reader RJ. 2002. Taxonomic basis for variation in the colonization strategy of arbuscular mycorrhizal fungi. New Phytologist 153: 335-344.
-
(2002)
New Phytologist
, vol.153
, pp. 335-344
-
-
Hart, M.M.1
Reader, R.J.2
-
30
-
-
33947434406
-
Functional traits in mycorrhizal ecology: their use for predicting the impact of arbuscular mycorrhizal fungal communities on plant growth and ecosystem functioning
-
van der Heijden MGA, Scheublin TR. 2007. Functional traits in mycorrhizal ecology: their use for predicting the impact of arbuscular mycorrhizal fungal communities on plant growth and ecosystem functioning. New Phytologist 174: 244-250.
-
(2007)
New Phytologist
, vol.174
, pp. 244-250
-
-
van der Heijden, M.G.A.1
Scheublin, T.R.2
-
31
-
-
0032581637
-
Ploughing up the wood-wide web?
-
Helgason T, Daniell TJ, Husband R, Fitter AH, Young JPW. 1998. Ploughing up the wood-wide web? Nature 394: 431.
-
(1998)
Nature
, vol.394
, pp. 431
-
-
Helgason, T.1
Daniell, T.J.2
Husband, R.3
Fitter, A.H.4
Young, J.P.W.5
-
32
-
-
34447305809
-
Differences in the species composition of arbuscular mycorrhizal fungi in spore, root and soil communities in a grassland ecosystem
-
Hempel S, Renker C, Buscot F. 2007. Differences in the species composition of arbuscular mycorrhizal fungi in spore, root and soil communities in a grassland ecosystem. Environmental Microbiology 9: 1930-1938.
-
(2007)
Environmental Microbiology
, vol.9
, pp. 1930-1938
-
-
Hempel, S.1
Renker, C.2
Buscot, F.3
-
33
-
-
79952447866
-
Progress in molecular and morphological taxon discovery in fungi and options for formal classification of environmental sequences
-
Hibbett DS, Ohman A, Glotzer D, Nuhn M, Kirk P, Nilsson RH. 2011. Progress in molecular and morphological taxon discovery in fungi and options for formal classification of environmental sequences. Fungal Biology Reviews 25: 38-47.
-
(2011)
Fungal Biology Reviews
, vol.25
, pp. 38-47
-
-
Hibbett, D.S.1
Ohman, A.2
Glotzer, D.3
Nuhn, M.4
Kirk, P.5
Nilsson, R.H.6
-
34
-
-
84901604502
-
Species richness of arbuscular mycorrhizal fungi: associations with grassland plant richness and biomass
-
Hiiesalu I, Meelis P, Davison J, Gerhold P, Metsis M, Moora M, Öpik M, Vasar M, Zobel M, Wilson SD. 2014. Species richness of arbuscular mycorrhizal fungi: associations with grassland plant richness and biomass. New Phytologist 203: 233-244.
-
(2014)
New Phytologist
, vol.203
, pp. 233-244
-
-
Hiiesalu, I.1
Meelis, P.2
Davison, J.3
Gerhold, P.4
Metsis, M.5
Moora, M.6
Öpik, M.7
Vasar, M.8
Zobel, M.9
Wilson, S.D.10
-
36
-
-
84986977161
-
External hyphae of vesicular-arbuscular mycorrhizal fungi associated with Trifolium subterraneum L. 1. Spread of hyphae and phosphorus inflow into roots
-
Jakobsen I, Abbott LK, Robson AD. 1992. External hyphae of vesicular-arbuscular mycorrhizal fungi associated with Trifolium subterraneum L. 1. Spread of hyphae and phosphorus inflow into roots. New Phytologist 120: 371-380.
-
(1992)
New Phytologist
, vol.120
, pp. 371-380
-
-
Jakobsen, I.1
Abbott, L.K.2
Robson, A.D.3
-
37
-
-
84924962530
-
Quantification of arbuscular mycorrhizal fungal DNA in roots: how important is material preservation?
-
Janoušková M, Püschel D, Hujslová M, Slavíková R, Jansa J. 2015. Quantification of arbuscular mycorrhizal fungal DNA in roots: how important is material preservation? Mycorrhiza. doi:10.1007/s00572-014-0602-7.
-
(2015)
Mycorrhiza
-
-
Janoušková, M.1
Püschel, D.2
Hujslová, M.3
Slavíková, R.4
Jansa, J.5
-
38
-
-
84874685940
-
Fungal communities in soils along a vegetative ecotone
-
Karst J, Piculell B, Bringham C, Booth M, Hoeksema J. 2013. Fungal communities in soils along a vegetative ecotone. Mycologia 105: 61-70.
-
(2013)
Mycologia
, vol.105
, pp. 61-70
-
-
Karst, J.1
Piculell, B.2
Bringham, C.3
Booth, M.4
Hoeksema, J.5
-
39
-
-
0003355497
-
Detection of arbuscular mycorrhizal fungi (Glomales) in roots by nested PCR and SSCP (single stranded conformation polymorphism)
-
Kjøller R, Rosendahl S. 2000. Detection of arbuscular mycorrhizal fungi (Glomales) in roots by nested PCR and SSCP (single stranded conformation polymorphism). Plant and Soil 226: 189-196.
-
(2000)
Plant and Soil
, vol.226
, pp. 189-196
-
-
Kjøller, R.1
Rosendahl, S.2
-
40
-
-
84887387600
-
Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: is there a universal solution?
-
Kohout P, Sudová R, Janoušková M, Čtvrtlíková M, Hejda M, Pánková H, Slavíková R, Štajerová K, Vosátka M, Sýkorová Z. 2014. Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: is there a universal solution? Soil Biology and Biochemistry 68: 482-493.
-
(2014)
Soil Biology and Biochemistry
, vol.68
, pp. 482-493
-
-
Kohout, P.1
Sudová, R.2
Janoušková, M.3
Čtvrtlíková, M.4
Hejda, M.5
Pánková, H.6
Slavíková, R.7
Štajerová, K.8
Vosátka, M.9
Sýkorová, Z.10
-
41
-
-
84886099720
-
Towards a unified paradigm for sequence-based identification of fungi
-
Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Mohammad B, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM, Douglas B et al. 2013. Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology 22: 5271-5277.
-
(2013)
Molecular Ecology
, vol.22
, pp. 5271-5277
-
-
Kõljalg, U.1
Nilsson, R.H.2
Abarenkov, K.3
Tedersoo, L.4
Mohammad, B.5
Bates, S.T.6
Bruns, T.D.7
Bengtsson-Palme, J.8
Callaghan, T.M.9
Douglas, B.10
-
42
-
-
84856534511
-
Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level
-
Krüger M, Krüger C, Walker C, Stockinger H, Schüßler A. 2011. Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New Phytologist 193: 907-984.
-
(2011)
New Phytologist
, vol.193
, pp. 907-984
-
-
Krüger, M.1
Krüger, C.2
Walker, C.3
Stockinger, H.4
Schüßler, A.5
-
43
-
-
73349110099
-
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. 2010. Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology 12: 118-123.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
44
-
-
84871441270
-
Hypothesis testing and power calculations for taxonomic-based human microbe data
-
La Rosa PS, Brooks JP, Deych E, Boone EL, Edwards DJ, Wang Q, Sodergren E, Weinstock G, Shannon WD. 2012. Hypothesis testing and power calculations for taxonomic-based human microbe data. PLoS ONE 7: e52078.
-
(2012)
PLoS ONE
, vol.7
, pp. e52078
-
-
La Rosa, P.S.1
Brooks, J.P.2
Deych, E.3
Boone, E.L.4
Edwards, D.J.5
Wang, Q.6
Sodergren, E.7
Weinstock, G.8
Shannon, W.D.9
-
45
-
-
84929966640
-
Hypothesis testing of metagenomic data
-
In:Izard J, Rivera M, eds. Waltham, MA, USA: Academic Press
-
La Rosa PS, Zhou Y, Sodergren E, Weinstock G, Shannon WD. 2015. Hypothesis testing of metagenomic data. In: Izard J, Rivera M, eds. Metagenomics for microbiology. Waltham, MA, USA: Academic Press, 81-96.
-
(2015)
Metagenomics for microbiology
, pp. 81-96
-
-
La Rosa, P.S.1
Zhou, Y.2
Sodergren, E.3
Weinstock, G.4
Shannon, W.D.5
-
46
-
-
47249086082
-
Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi
-
Lee J, Lee S, Young JPW. 2008. Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi. FEMS Microbiology Ecology 65: 339-349.
-
(2008)
FEMS Microbiology Ecology
, vol.65
, pp. 339-349
-
-
Lee, J.1
Lee, S.2
Young, J.P.W.3
-
48
-
-
84899961930
-
Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns ?
-
Lekberg Y, Gibbons SM, Rosendahl S. 2014. Will different OTU delineation methods change interpretation of arbuscular mycorrhizal fungal community patterns ? New Phytologist 202: 1101-1104.
-
(2014)
New Phytologist
, vol.202
, pp. 1101-1104
-
-
Lekberg, Y.1
Gibbons, S.M.2
Rosendahl, S.3
-
49
-
-
84880924803
-
Severe plant invasions can increase mycorrhizal fungal abundance and diversity
-
Lekberg Y, Gibbons SM, Rosendahl S, Ramsay PW. 2013. Severe plant invasions can increase mycorrhizal fungal abundance and diversity. ISME Journal 7: 1424-1433.
-
(2013)
ISME Journal
, vol.7
, pp. 1424-1433
-
-
Lekberg, Y.1
Gibbons, S.M.2
Rosendahl, S.3
Ramsay, P.W.4
-
50
-
-
79959897534
-
Importance of dispersal and thermal environment for mycorrhizal communities: lessons from Yellowstone National Park
-
Lekberg Y, Meadow J, Rohr JR, Redecker D, Zabinski CA. 2011. Importance of dispersal and thermal environment for mycorrhizal communities: lessons from Yellowstone National Park. Ecology 96: 1292-1302.
-
(2011)
Ecology
, vol.96
, pp. 1292-1302
-
-
Lekberg, Y.1
Meadow, J.2
Rohr, J.R.3
Redecker, D.4
Zabinski, C.A.5
-
51
-
-
83455224377
-
454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
-
Lekberg Y, Schnoor T, Kjøller R, Gibbons SM, Hansen LH, Al-Soud WA, Sørensen SJ, Rosendahl S. 2012. 454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities. Journal of Ecology 100: 151-160.
-
(2012)
Journal of Ecology
, vol.100
, pp. 151-160
-
-
Lekberg, Y.1
Schnoor, T.2
Kjøller, R.3
Gibbons, S.M.4
Hansen, L.H.5
Al-Soud, W.A.6
Sørensen, S.J.7
Rosendahl, S.8
-
52
-
-
84871267350
-
First cloning and characterization of two functional aquaporin genes from an arbuscular mycorrhizal fungus Glomus intraradices
-
Li T, Hu YJ, Hao ZP, Li H, Wang YS, Chen BD. 2013. First cloning and characterization of two functional aquaporin genes from an arbuscular mycorrhizal fungus Glomus intraradices. New Phytologist 197: 617-630.
-
(2013)
New Phytologist
, vol.197
, pp. 617-630
-
-
Li, T.1
Hu, Y.J.2
Hao, Z.P.3
Li, H.4
Wang, Y.S.5
Chen, B.D.6
-
53
-
-
3142662126
-
Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities
-
Lilleskov EA, Bruns TD, Horton TR, Taylor D, Grogan P. 2004. Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities. FEMS Microbiology Ecology 49: 319-332.
-
(2004)
FEMS Microbiology Ecology
, vol.49
, pp. 319-332
-
-
Lilleskov, E.A.1
Bruns, T.D.2
Horton, T.R.3
Taylor, D.4
Grogan, P.5
-
54
-
-
84893748588
-
Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus
-
Lin K, Limpens E, Zhang Z, Ivanov S, Saunders DGO, Mu D, Pang E, Cao H, Cha H, Lin T et al. 2014. Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus. PLoS Genetics 10: e1004078.
-
(2014)
PLoS Genetics
, vol.10
, pp. e1004078
-
-
Lin, K.1
Limpens, E.2
Zhang, Z.3
Ivanov, S.4
Saunders, D.G.O.5
Mu, D.6
Pang, E.7
Cao, H.8
Cha, H.9
Lin, T.10
-
55
-
-
85016968027
-
Metagenomics for study of fungal ecology
-
In: Martin F, ed. Chichester, UK: John Wiley & Sons, Inc.
-
Lindahl BD, Kuske CR. 2013. Metagenomics for study of fungal ecology. In: Martin F, ed. The ecological genomics of fungi. Chichester, UK: John Wiley & Sons, Inc., 281-303.
-
(2013)
The ecological genomics of fungi
, pp. 281-303
-
-
Lindahl, B.D.1
Kuske, C.R.2
-
56
-
-
84878360700
-
Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
-
Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjøller R, Kõljalg U, Pennanen T, Rosendahl S, Stenlid J et al. 2013. Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide. New Phytologist 199: 288-299.
-
(2013)
New Phytologist
, vol.199
, pp. 288-299
-
-
Lindahl, B.D.1
Nilsson, R.H.2
Tedersoo, L.3
Abarenkov, K.4
Carlsen, T.5
Kjøller, R.6
Kõljalg, U.7
Pennanen, T.8
Rosendahl, S.9
Stenlid, J.10
-
57
-
-
0002001757
-
Diversity of the ribosomal internal transcribed spacers within and among isolates of Glomus mosseae and related mycorrhizal fungi
-
Lloyd-MacGilp SA, Chambers SM, Dodd JC, Fitter AH, Walker C, Young JP. 1996. Diversity of the ribosomal internal transcribed spacers within and among isolates of Glomus mosseae and related mycorrhizal fungi. New Phytologist 133: 103-111.
-
(1996)
New Phytologist
, vol.133
, pp. 103-111
-
-
Lloyd-MacGilp, S.A.1
Chambers, S.M.2
Dodd, J.C.3
Fitter, A.H.4
Walker, C.5
Young, J.P.6
-
58
-
-
84924629414
-
Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2"
-
Love MI, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2". Genome Biology 15: 550.
-
(2014)
Genome Biology
, vol.15
, pp. 550
-
-
Love, M.I.1
Huber, W.2
Anders, S.3
-
59
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar , Buchner A, Lai T, Steppi S, Jobb G et al. 2004. ARB: a software environment for sequence data. Nucleic Acids Research 32: 1363-1371.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, .6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
-
60
-
-
77955262221
-
Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach
-
Lumini E, Orgiazzi A, Borriello R, Bonfante P, Bianciotto V. 2010. Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach. Environmental Microbiology 12: 2165-2179.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 2165-2179
-
-
Lumini, E.1
Orgiazzi, A.2
Borriello, R.3
Bonfante, P.4
Bianciotto, V.5
-
61
-
-
84866389483
-
PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution
-
Mahé S, Duhamel M, Le Calvez T, Guillot L, Sarbu L, Bretaudeau A, Collin O, Dufresne A, Kiers ET, Vandenkoornhuyse P. 2012. PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution. PLoS ONE 7: e43117.
-
(2012)
PLoS ONE
, vol.7
, pp. e43117
-
-
Mahé, S.1
Duhamel, M.2
Le Calvez, T.3
Guillot, L.4
Sarbu, L.5
Bretaudeau, A.6
Collin, O.7
Dufresne, A.8
Kiers, E.T.9
Vandenkoornhuyse, P.10
-
63
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. 2012. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME Journal 6: 610-618.
-
(2012)
ISME Journal
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
64
-
-
84876427223
-
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data
-
McMurdie PJ, Holmes S. 2013. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8: e61217.
-
(2013)
PLoS ONE
, vol.8
, pp. e61217
-
-
McMurdie, P.J.1
Holmes, S.2
-
65
-
-
84901363655
-
Waste not, want not: why rarefying microbiome data is inadmissible
-
McMurdie PJ, Holmes S. 2014. Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Computational Biology 10: e1003531.
-
(2014)
PLoS Computational Biology
, vol.10
, pp. e1003531
-
-
McMurdie, P.J.1
Holmes, S.2
-
66
-
-
84858074383
-
Mycoheterotrophic interactions are not limited to a narrow phylogenetic range of arbuscular mycorrhizal fungi
-
Merckx VSFT, Janssens SB, Hynson NA, Specht CD, Bruns TD, Smets EF. 2012. Mycoheterotrophic interactions are not limited to a narrow phylogenetic range of arbuscular mycorrhizal fungi. Molecular Ecology 21: 1524-1532.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1524-1532
-
-
Merckx, V.S.F.T.1
Janssens, S.B.2
Hynson, N.A.3
Specht, C.D.4
Bruns, T.D.5
Smets, E.F.6
-
67
-
-
79951809934
-
Patterns of fungal diversity and composition along a salinity gradient
-
Mohamed DJ, Martiny JBH. 2011. Patterns of fungal diversity and composition along a salinity gradient. ISME Journal 5: 379-388.
-
(2011)
ISME Journal
, vol.5
, pp. 379-388
-
-
Mohamed, D.J.1
Martiny, J.B.H.2
-
68
-
-
79959347335
-
Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing
-
Moora M, Berger S, Davison J, Öpik M, Bommarco R, Bruelheide H, Kühn I, Kunin WE, Metsis M, Rortais A et al. 2011. Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing. Journal of Biogeography 38: 1305-1317.
-
(2011)
Journal of Biogeography
, vol.38
, pp. 1305-1317
-
-
Moora, M.1
Berger, S.2
Davison, J.3
Öpik, M.4
Bommarco, R.5
Bruelheide, H.6
Kühn, I.7
Kunin, W.E.8
Metsis, M.9
Rortais, A.10
-
69
-
-
42149190238
-
Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland
-
Mummey DL, Rillig MC. 2008. Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland. FEMS Microbiology Ecology 64: 260-270.
-
(2008)
FEMS Microbiology Ecology
, vol.64
, pp. 260-270
-
-
Mummey, D.L.1
Rillig, M.C.2
-
70
-
-
27144440816
-
Extraction of extraradical arbuscular mycorrhizal mycelium from compartments filled with soil and glass beads
-
Neumann E, George E. 2005. Extraction of extraradical arbuscular mycorrhizal mycelium from compartments filled with soil and glass beads. Mycorrhiza 15: 533-537.
-
(2005)
Mycorrhiza
, vol.15
, pp. 533-537
-
-
Neumann, E.1
George, E.2
-
71
-
-
84922778461
-
Parsing ecological signal from noise in next generation amplicon sequencing
-
Nguyen NH, Smith D, Peay K, Kennedy P. 2015. Parsing ecological signal from noise in next generation amplicon sequencing. New Phytologist 205: 1389-1393.
-
(2015)
New Phytologist
, vol.205
, pp. 1389-1393
-
-
Nguyen, N.H.1
Smith, D.2
Peay, K.3
Kennedy, P.4
-
72
-
-
79959874811
-
Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities
-
Nilsson RH, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T et al. 2011. Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities. New Phytologist 191: 314-318.
-
(2011)
New Phytologist
, vol.191
, pp. 314-318
-
-
Nilsson, R.H.1
Tedersoo, L.2
Lindahl, B.D.3
Kjøller, R.4
Carlsen, T.5
Quince, C.6
Abarenkov, K.7
Pennanen, T.8
Stenlid, J.9
Bruns, T.10
-
73
-
-
25144516095
-
Fungal community analysis by large-scale sequencing of environmental samples
-
O'Brien HE, Parrent JL, Jackson JA, Moncalvo J, Vilgalys R. 2005. Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology 71: 5544-5550.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 5544-5550
-
-
O'Brien, H.E.1
Parrent, J.L.2
Jackson, J.A.3
Moncalvo, J.4
Vilgalys, R.5
-
74
-
-
77957797529
-
Internet-accessible DNA sequence database for identifying Fusaria from human and animal infections
-
O'Donnell K, Sutton DA, Rinaldi MG, Sarver BA, Balajee SA, Schroers H, Summerbell RC, Robert VARG, Crous PW, Zhang N et al. 2010. Internet-accessible DNA sequence database for identifying Fusaria from human and animal infections. Journal of Clinical Microbiology 48: 3708-3718.
-
(2010)
Journal of Clinical Microbiology
, vol.48
, pp. 3708-3718
-
-
O'Donnell, K.1
Sutton, D.A.2
Rinaldi, M.G.3
Sarver, B.A.4
Balajee, S.A.5
Schroers, H.6
Summerbell, R.C.7
Robert, V.A.R.G.8
Crous, P.W.9
Zhang, N.10
-
75
-
-
11144328055
-
Community structure of arbuscular mycorrhizal fungi at different soil depths in extensively and intensively managed agroecosystems
-
Oehl F, Sieverding E, Ineichen K, Ris E, Boller T, Wiemken A. 2003. Community structure of arbuscular mycorrhizal fungi at different soil depths in extensively and intensively managed agroecosystems. New Phytologist 165: 273-283.
-
(2003)
New Phytologist
, vol.165
, pp. 273-283
-
-
Oehl, F.1
Sieverding, E.2
Ineichen, K.3
Ris, E.4
Boller, T.5
Wiemken, A.6
-
77
-
-
84890578683
-
DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences
-
Öpik M, Davison J, Moora M, Zobel M. 2014. DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences. Botany-Botanique 92: 135-147.
-
(2014)
Botany-Botanique
, vol.92
, pp. 135-147
-
-
Öpik, M.1
Davison, J.2
Moora, M.3
Zobel, M.4
-
78
-
-
70349525156
-
Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
-
Öpik M, Metsis M, Daniell TJ, Zobel M, Moora M. 2009. Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist 184: 424-437.
-
(2009)
New Phytologist
, vol.184
, pp. 424-437
-
-
Öpik, M.1
Metsis, M.2
Daniell, T.J.3
Zobel, M.4
Moora, M.5
-
79
-
-
77956292194
-
The online database Maarj AM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
-
Öpik M, Vanatoa A, Vanatoa E, Moora M, Davison J, Kalwij JM, Reier Ü, Zobel M. 2010. The online database Maarj AM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota). New Phytologist 188: 223-241.
-
(2010)
New Phytologist
, vol.188
, pp. 223-241
-
-
Öpik, M.1
Vanatoa, A.2
Vanatoa, E.3
Moora, M.4
Davison, J.5
Kalwij, J.M.6
Reier, U.7
Zobel, M.8
-
80
-
-
84878912091
-
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi
-
Öpik M, Zobel M, Cantero JJ, Davison J, Facelli JM, Hiiesalu I, Jairus T, Kalwij JM, Koorem K, Leal ME et al. 2013. Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi. Mycorrhiza 23: 411-430.
-
(2013)
Mycorrhiza
, vol.23
, pp. 411-430
-
-
Öpik, M.1
Zobel, M.2
Cantero, J.J.3
Davison, J.4
Facelli, J.M.5
Hiiesalu, I.6
Jairus, T.7
Kalwij, J.M.8
Koorem, K.9
Leal, M.E.10
-
81
-
-
84922830173
-
Back to the future: natural history and the way forward in modern fungal ecology
-
Peay KG. 2014. Back to the future: natural history and the way forward in modern fungal ecology. Fungal Ecology 12: 4-9.
-
(2014)
Fungal Ecology
, vol.12
, pp. 4-9
-
-
Peay, K.G.1
-
82
-
-
84867571652
-
Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions
-
Pickles BJ, Genney DR, Anderson IC, Alexander IJ. 2012. Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions. Molecular Ecology 21: 5110-5123.
-
(2012)
Molecular Ecology
, vol.21
, pp. 5110-5123
-
-
Pickles, B.J.1
Genney, D.R.2
Anderson, I.C.3
Alexander, I.J.4
-
83
-
-
84893421167
-
Still scratching the surface: how much of the "black box" of soil ectomycorrhizal communities remains in the dark?
-
Pickles BJ, Pither J. 2014. Still scratching the surface: how much of the "black box" of soil ectomycorrhizal communities remains in the dark? New Phytologist 201: 1101-1105.
-
(2014)
New Phytologist
, vol.201
, pp. 1101-1105
-
-
Pickles, B.J.1
Pither, J.2
-
84
-
-
78751671066
-
Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories
-
Powell JR, Monaghan MT, Öpik M, Rillig MC. 2011. Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories. Molecular Ecology 20: 655-666.
-
(2011)
Molecular Ecology
, vol.20
, pp. 655-666
-
-
Powell, J.R.1
Monaghan, M.T.2
Öpik, M.3
Rillig, M.C.4
-
86
-
-
34247221045
-
The role of ecological theory in microbial ecology
-
Prosser JI, Bohannan BJM, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ et al. 2007. The role of ecological theory in microbial ecology. Nature 5: 384-392.
-
(2007)
Nature
, vol.5
, pp. 384-392
-
-
Prosser, J.I.1
Bohannan, B.J.M.2
Curtis, T.P.3
Ellis, R.J.4
Firestone, M.K.5
Freckleton, R.P.6
Green, J.L.7
Green, L.E.8
Killham, K.9
Lennon, J.J.10
-
87
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR. 2007. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Research 35(Suppl. 1): D61-D65.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. D61-D65
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
88
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research 41: D590-D596.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
Peplies, J.7
Glöckner, F.O.8
-
90
-
-
77956304094
-
Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
-
Reeder J, Knight R. 2010. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nature Methods 7: 668-669.
-
(2010)
Nature Methods
, vol.7
, pp. 668-669
-
-
Reeder, J.1
Knight, R.2
-
91
-
-
4644226067
-
Community structure of arbuscular mycorrhizal fungi in undisturbed vegetation revealed by analyses of LSU rDNA sequences
-
Rosendahl S, Stukenbrock EH. 2004. Community structure of arbuscular mycorrhizal fungi in undisturbed vegetation revealed by analyses of LSU rDNA sequences. Molecular Ecology 13: 3179-3186.
-
(2004)
Molecular Ecology
, vol.13
, pp. 3179-3186
-
-
Rosendahl, S.1
Stukenbrock, E.H.2
-
92
-
-
84898759652
-
Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey
-
Saks Ü, Davison J, Öpik M, Vasar M, Moora M, Zobel M. 2014. Root-colonizing and soil-borne communities of arbuscular mycorrhizal fungi in a temperate forest understorey. Botany-Botanique 92: 277-285.
-
(2014)
Botany-Botanique
, vol.92
, pp. 277-285
-
-
Saks, U.1
Davison, J.2
Öpik, M.3
Vasar, M.4
Moora, M.5
Zobel, M.6
-
93
-
-
9244242615
-
Plant and arbuscular mycorrhizal fungal diversity - are we looking at the relevant levels of diversity and are we using the right techniques?
-
Sanders IR. 2004. Plant and arbuscular mycorrhizal fungal diversity - are we looking at the relevant levels of diversity and are we using the right techniques? New Phytologist 164: 415-418.
-
(2004)
New Phytologist
, vol.164
, pp. 415-418
-
-
Sanders, I.R.1
-
94
-
-
67349279099
-
A new primer for discrimination of arbuscular mycorrhizal fungi with polymerase chain reaction-denature gradient gel electrophoresis
-
Sato K, Suyama Y, Saito M, Sugawara K. 2005. A new primer for discrimination of arbuscular mycorrhizal fungi with polymerase chain reaction-denature gradient gel electrophoresis. Grassland Science 51: 179-181.
-
(2005)
Grassland Science
, vol.51
, pp. 179-181
-
-
Sato, K.1
Suyama, Y.2
Saito, M.3
Sugawara, K.4
-
95
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology 75: 7537-7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
-
96
-
-
84879434377
-
Illumina metabarcoding of a soil fungal community
-
Schmidt PA, Balint M, Greshake B, Blandow C, Römbke J, Schmitt I. 2013. Illumina metabarcoding of a soil fungal community. Soil Biology & Biochemistry 65: 128-132.
-
(2013)
Soil Biology & Biochemistry
, vol.65
, pp. 128-132
-
-
Schmidt, P.A.1
Balint, M.2
Greshake, B.3
Blandow, C.4
Römbke, J.5
Schmitt, I.6
-
97
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, USA 109: 6241-6246.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
Levesque, C.A.6
Chen, W.7
-
98
-
-
0035138493
-
A simple and reliable method for SSU rRNA gene DNA extraction, amplification, and cloning from single AM fungal spores
-
Schwarzott D, Schüßler A. 2001. A simple and reliable method for SSU rRNA gene DNA extraction, amplification, and cloning from single AM fungal spores. Mycorrhiza 10: 203-207.
-
(2001)
Mycorrhiza
, vol.10
, pp. 203-207
-
-
Schwarzott, D.1
Schüßler, A.2
-
99
-
-
84867747476
-
Arbuscular mycorrhizal fungal communities change among three stages of primary sand dune succession but do not alter plant growth
-
Sikes BA, Maherali H, Klironomos JN. 2012. Arbuscular mycorrhizal fungal communities change among three stages of primary sand dune succession but do not alter plant growth. Oikos 121: 1791-1800.
-
(2012)
Oikos
, vol.121
, pp. 1791-1800
-
-
Sikes, B.A.1
Maherali, H.2
Klironomos, J.N.3
-
101
-
-
34248368458
-
Ectomycorrhizal community structure in a xeric Quercus woodland based on rDNA sequence analysis of sporocarps and pooled roots
-
Smith ME, Douhan GW, Rizzo DM. 2007. Ectomycorrhizal community structure in a xeric Quercus woodland based on rDNA sequence analysis of sporocarps and pooled roots. New Phytologist 174: 847-863.
-
(2007)
New Phytologist
, vol.174
, pp. 847-863
-
-
Smith, M.E.1
Douhan, G.W.2
Rizzo, D.M.3
-
103
-
-
84907494029
-
The largest subunit of RNA Polymerase II as a new marker gene to study assemblages of arbuscular mycorrhizal fungi in the field
-
Stockinger H, Peyret-Guzzon M, Koegel S, Bouffaud M-L, Redecker D. 2014. The largest subunit of RNA Polymerase II as a new marker gene to study assemblages of arbuscular mycorrhizal fungi in the field. PLoS ONE 9: e107783.
-
(2014)
PLoS ONE
, vol.9
, pp. e107783
-
-
Stockinger, H.1
Peyret-Guzzon, M.2
Koegel, S.3
Bouffaud, M.-L.4
Redecker, D.5
-
104
-
-
36448961956
-
The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment
-
Sýkorová Z, Ineichen K, Wiemken A, Redecker D. 2007. The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment. Mycorrhiza 18: 1-14.
-
(2007)
Mycorrhiza
, vol.18
, pp. 1-14
-
-
Sýkorová, Z.1
Ineichen, K.2
Wiemken, A.3
Redecker, D.4
-
105
-
-
80052852504
-
Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi
-
Tedersoo L, Abarenkov K, Nilsson RH, Schüssler A, Grelet G-A, Kohout P, Oja J, Bonito GM, Veldre V, Jairus T et al. 2011. Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi. PLoS ONE 6: e24940.
-
(2011)
PLoS ONE
, vol.6
, pp. e24940
-
-
Tedersoo, L.1
Abarenkov, K.2
Nilsson, R.H.3
Schüssler, A.4
Grelet, G.-A.5
Kohout, P.6
Oja, J.7
Bonito, G.M.8
Veldre, V.9
Jairus, T.10
-
106
-
-
77956283658
-
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
-
Tedersoo L, Nilsson RH, Abarenkov K, Jairus T, Sadam A, Saar I, Mohammad B, Bechem E, Chuyong G, Kõljalg U. 2010. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist 188: 291-301.
-
(2010)
New Phytologist
, vol.188
, pp. 291-301
-
-
Tedersoo, L.1
Nilsson, R.H.2
Abarenkov, K.3
Jairus, T.4
Sadam, A.5
Saar, I.6
Mohammad, B.7
Bechem, E.8
Chuyong, G.9
Kõljalg, U.10
-
107
-
-
84874943013
-
Inter- and intrasporal nuclear ribosomal gene sequence variation within one isolate of arbuscular mycorrhizal fungus, Diversispora sp
-
Thiéry O, Moora M, Vasar M, Zobel M, Öpik M. 2012. Inter- and intrasporal nuclear ribosomal gene sequence variation within one isolate of arbuscular mycorrhizal fungus, Diversispora sp. Symbiosis 58: 135-147.
-
(2012)
Symbiosis
, vol.58
, pp. 135-147
-
-
Thiéry, O.1
Moora, M.2
Vasar, M.3
Zobel, M.4
Öpik, M.5
-
108
-
-
84890285092
-
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
-
Tisserant E, Malbreil M, Kuo A, Kohler A, Symeonidi A, Balestrini R, Charron P, Duensing N, Frei dit Frey N, Gianinazzi-Pearson V et al. 2013. Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proceedings of the National Academy of Sciences, USA 110: 20 117-20 122.
-
(2013)
Proceedings of the National Academy of Sciences, USA
, vol.110
, pp. 20 117-20 122
-
-
Tisserant, E.1
Malbreil, M.2
Kuo, A.3
Kohler, A.4
Symeonidi, A.5
Balestrini, R.6
Charron, P.7
Duensing, N.8
Frei dit Frey, N.9
Gianinazzi-Pearson, V.10
-
109
-
-
84908448987
-
Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing
-
Van Geel M, Busschaert P, Honnay O, Lievens B. 2014. Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing. Journal of Microbiological Methods 106: 93-100.
-
(2014)
Journal of Microbiological Methods
, vol.106
, pp. 93-100
-
-
Van Geel, M.1
Busschaert, P.2
Honnay, O.3
Lievens, B.4
-
110
-
-
0035993783
-
Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem
-
Vandenkoornhuyse P, Husband R, Daniell TJ, Watson IJ, Duck JM, Fitter AH, Young JP. 2002. Arbuscular mycorrhizal community composition associated with two plant species in a grassland ecosystem. Molecular Ecology 11: 1555-1564.
-
(2002)
Molecular Ecology
, vol.11
, pp. 1555-1564
-
-
Vandenkoornhuyse, P.1
Husband, R.2
Daniell, T.J.3
Watson, I.J.4
Duck, J.M.5
Fitter, A.H.6
Young, J.P.7
-
111
-
-
84868348766
-
Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting
-
Verbruggen E, Kuramae EE, Hillekens R, de Hollander M, Kiers ET, Röling WFM, Kowalchuk GA, van der Heijden MGA. 2012. Testing potential effects of maize expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) on mycorrhizal fungal communities via DNA- and RNA-based pyrosequencing and molecular fingerprinting. Applied and Environmental Microbiology 78: 7384-7392.
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 7384-7392
-
-
Verbruggen, E.1
Kuramae, E.E.2
Hillekens, R.3
de Hollander, M.4
Kiers, E.T.5
Röling, W.F.M.6
Kowalchuk, G.A.7
van der Heijden, M.G.A.8
-
112
-
-
0034861052
-
Estimation of the biomass and seasonal growth of external mycelium of ectomycorrhizal fungi in the field
-
Wallander H, Nilsson LO, Hagerberg D, Bååth E. 2001. Estimation of the biomass and seasonal growth of external mycelium of ectomycorrhizal fungi in the field. New Phytologist 151: 753-760.
-
(2001)
New Phytologist
, vol.151
, pp. 753-760
-
-
Wallander, H.1
Nilsson, L.O.2
Hagerberg, D.3
Bååth, E.4
|