-
1
-
-
78650578953
-
PlutoF-a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences
-
Abarenkov K., Tedersoo L., Nilsson R.H., Vellak K., Saar I., Veldre V., Parmasto E., Prous M., Aan A., Ots M., et al. PlutoF-a web based workbench for ecological and taxonomic research, with an online implementation for fungal ITS sequences. Evol. Bioinforma. 2010, 6:189-196.
-
(2010)
Evol. Bioinforma.
, vol.6
, pp. 189-196
-
-
Abarenkov, K.1
Tedersoo, L.2
Nilsson, R.H.3
Vellak, K.4
Saar, I.5
Veldre, V.6
Parmasto, E.7
Prous, M.8
Aan, A.9
Ots, M.10
-
2
-
-
77954748234
-
The UNITE database for molecular identification of fungi - recent updates and future perspectives
-
Abarenkov K., Nilsson R.H., Larsson K.H., Alexander I.J., Eberhardt U., Erland S., Hoiland K., Kjøller R., Larsson E., Pennanen T., et al. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytol. 2010, 186:281-285.
-
(2010)
New Phytol.
, vol.186
, pp. 281-285
-
-
Abarenkov, K.1
Nilsson, R.H.2
Larsson, K.H.3
Alexander, I.J.4
Eberhardt, U.5
Erland, S.6
Hoiland, K.7
Kjøller, R.8
Larsson, E.9
Pennanen, T.10
-
3
-
-
78449312022
-
Plant type differently promote the arbuscular mycorrhizal fungi biodiversity in the rhizosphere after revegetation of a degraded, semiarid land
-
Alguacil M.M., Torres M.P., Torrecillas E., Diaz G., Roldán A. Plant type differently promote the arbuscular mycorrhizal fungi biodiversity in the rhizosphere after revegetation of a degraded, semiarid land. Soil Biol Biochem. 2011, 43:167-173.
-
(2011)
Soil Biol Biochem.
, vol.43
, pp. 167-173
-
-
Alguacil, M.M.1
Torres, M.P.2
Torrecillas, E.3
Diaz, G.4
Roldán, A.5
-
4
-
-
1042278600
-
Quantification of the arbuscular mycorrhizal fungus Glomus intraradices in host tissue using real-time polymerase chain reaction
-
Alkan N., Gadkar V., Coburn J., Yarden O., Kapulnik Y. Quantification of the arbuscular mycorrhizal fungus Glomus intraradices in host tissue using real-time polymerase chain reaction. New Phytol. 2004, 161:877-885.
-
(2004)
New Phytol.
, vol.161
, pp. 877-885
-
-
Alkan, N.1
Gadkar, V.2
Coburn, J.3
Yarden, O.4
Kapulnik, Y.5
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
6
-
-
33846473192
-
Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules
-
Anderson I.C., Parkin P.I. Detection of active soil fungi by RT-PCR amplification of precursor rRNA molecules. J.Microbiol. Methods 2007, 68:248-253.
-
(2007)
J.Microbiol. Methods
, vol.68
, pp. 248-253
-
-
Anderson, I.C.1
Parkin, P.I.2
-
7
-
-
53749103344
-
Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soil in Yellowstone national park
-
Appoloni S., Lekberg Y., Tercek M.T., Zabinski C.A., Redecker D. Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soil in Yellowstone national park. Microb. Ecol. 2008, 56:649-659.
-
(2008)
Microb. Ecol.
, vol.56
, pp. 649-659
-
-
Appoloni, S.1
Lekberg, Y.2
Tercek, M.T.3
Zabinski, C.A.4
Redecker, D.5
-
8
-
-
80052851028
-
Influence of trees on the spatial structure of arbuscular mycorrhizal communities in a temperate tree-based intercropping system
-
Bainard L.D., Koch A.M., Gordon A.M., Newmaster S.G., Thevathasan N.V., Klironomos J.N. Influence of trees on the spatial structure of arbuscular mycorrhizal communities in a temperate tree-based intercropping system. Agric. Ecosyst. Environ. 2011, 144:13-20.
-
(2011)
Agric. Ecosyst. Environ.
, vol.144
, pp. 13-20
-
-
Bainard, L.D.1
Koch, A.M.2
Gordon, A.M.3
Newmaster, S.G.4
Thevathasan, N.V.5
Klironomos, J.N.6
-
9
-
-
84855937877
-
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
-
Baldrian P., Kolařík M., Štursová M., Kopecký J., Valášková V., Větrovský T., Žifčáková L., Šnajdr J., Ridl J., Vlček C., et al. Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME J. 2012, 6:248-258.
-
(2012)
ISME J.
, vol.6
, pp. 248-258
-
-
Baldrian, P.1
Kolařík, M.2
Štursová, M.3
Kopecký, J.4
Valášková, V.5
Větrovský, T.6
Žifčáková, L.7
Šnajdr, J.8
Ridl, J.9
Vlček, C.10
-
10
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
11
-
-
0028978636
-
Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community
-
Clapp J.P., Young J.P.W., Merryweather J.W., Fitter A.H. Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community. New Phytol. 1995, 130:259-265.
-
(1995)
New Phytol.
, vol.130
, pp. 259-265
-
-
Clapp, J.P.1
Young, J.P.W.2
Merryweather, J.W.3
Fitter, A.H.4
-
13
-
-
0034942590
-
Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops
-
Daniell T.J., Husband R., Fitter A.H., Young J.P.W. Molecular diversity of arbuscular mycorrhizal fungi colonising arable crops. FEMS Microbiol. Ecol. 2001, 36:203-209.
-
(2001)
FEMS Microbiol. Ecol.
, vol.36
, pp. 203-209
-
-
Daniell, T.J.1
Husband, R.2
Fitter, A.H.3
Young, J.P.W.4
-
14
-
-
1642267424
-
PCR-denaturing gradient gel electrophoresis profiling of inter- and intraspecies 18S rRNA gene sequence heterogeneity is an accurate and sensitive method to assess species diversity of arbuscular mycorrhizal fungi of the genus Gigaspora
-
de Souza F.A., Kowalchuk G.A., Leeflang P., van Veen J.A., Smit E. PCR-denaturing gradient gel electrophoresis profiling of inter- and intraspecies 18S rRNA gene sequence heterogeneity is an accurate and sensitive method to assess species diversity of arbuscular mycorrhizal fungi of the genus Gigaspora. Appl. Environ. Microbiol. 2004, 70:1413-1424.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1413-1424
-
-
de Souza, F.A.1
Kowalchuk, G.A.2
Leeflang, P.3
van Veen, J.A.4
Smit, E.5
-
15
-
-
34248524104
-
Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review
-
Dickie I.A., FitzJohn R.G. Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review. Mycorrhiza 2007, 17:259-270.
-
(2007)
Mycorrhiza
, vol.17
, pp. 259-270
-
-
Dickie, I.A.1
FitzJohn, R.G.2
-
16
-
-
77749254812
-
Idiosyncracy and overdominance in the structure of natural communities of arbuscular mycorrhizal fungi: is there a role for stochastic processes?
-
Dumbrell A.J., Nelson M., Helgason T., Dytham C., Fitter A.H. Idiosyncracy and overdominance in the structure of natural communities of arbuscular mycorrhizal fungi: is there a role for stochastic processes?. J.Ecol. 2010, 98:419-428.
-
(2010)
J.Ecol.
, vol.98
, pp. 419-428
-
-
Dumbrell, A.J.1
Nelson, M.2
Helgason, T.3
Dytham, C.4
Fitter, A.H.5
-
17
-
-
84867150537
-
Arbuscular mycorrhizal colonization of giant sequoia (Sequoiadendron giganteum) in response to restoration practices
-
Fahey C., York R.A., Pawlowska T.E. Arbuscular mycorrhizal colonization of giant sequoia (Sequoiadendron giganteum) in response to restoration practices. Mycologia 2012, 104:988-997.
-
(2012)
Mycologia
, vol.104
, pp. 988-997
-
-
Fahey, C.1
York, R.A.2
Pawlowska, T.E.3
-
18
-
-
63449139453
-
Diversispora celata sp. nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus
-
Gamper H.A., Walker C., Schussler A. Diversispora celata sp. nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus. New Phytol. 2009, 182:495-506.
-
(2009)
New Phytol.
, vol.182
, pp. 495-506
-
-
Gamper, H.A.1
Walker, C.2
Schussler, A.3
-
19
-
-
80051688000
-
Field guide to next-generation DNA seqeuencers
-
Glenn T.C. Field guide to next-generation DNA seqeuencers. Mol. Ecol. Resour. 2011, 11:759-769.
-
(2011)
Mol. Ecol. Resour.
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
20
-
-
2442484689
-
Diversity of arbuscular mycorrhizal fungi colonising roots of the grass species Agrostis capillaris and Lolium perenne in a field experiment
-
Gollotte A., van Tuinen D., Atkinson D. Diversity of arbuscular mycorrhizal fungi colonising roots of the grass species Agrostis capillaris and Lolium perenne in a field experiment. Mycorrhiza 2004, 14:111-117.
-
(2004)
Mycorrhiza
, vol.14
, pp. 111-117
-
-
Gollotte, A.1
van Tuinen, D.2
Atkinson, D.3
-
21
-
-
0032581637
-
Ploughing up the wood-wide web?
-
Helgason T., Daniell T.J., Husband R., Fitter A.H., Young J.P.W. Ploughing up the wood-wide web?. Nature 1998, 394:431.
-
(1998)
Nature
, vol.394
, pp. 431
-
-
Helgason, T.1
Daniell, T.J.2
Husband, R.3
Fitter, A.H.4
Young, J.P.W.5
-
22
-
-
0032892803
-
Molecular diversity of arbuscular mycorrhizal fungi colonising Hyacinthoides non-scripta (bluebell) in a seminatural woodland
-
Helgason T., Fitter A.H., Young J.P.W. Molecular diversity of arbuscular mycorrhizal fungi colonising Hyacinthoides non-scripta (bluebell) in a seminatural woodland. Mol. Ecol. 1999, 8:659-666.
-
(1999)
Mol. Ecol.
, vol.8
, pp. 659-666
-
-
Helgason, T.1
Fitter, A.H.2
Young, J.P.W.3
-
23
-
-
34447305809
-
Differences in the species composition of arbuscular mycorrhizal fungi in spore, root and soil communities in a grassland ecosystem
-
Hempel S., Renker C., Buscot F. Differences in the species composition of arbuscular mycorrhizal fungi in spore, root and soil communities in a grassland ecosystem. Environ. Microbiol. 2007, 9:1930-1938.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1930-1938
-
-
Hempel, S.1
Renker, C.2
Buscot, F.3
-
24
-
-
33745043597
-
Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity
-
Hijri I., Sýkorová Z., Oehl F., Ineichen K., Mader P., Wiemken A., Redecker D. Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity. Mol. Ecol. 2006, 15:2277-2289.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 2277-2289
-
-
Hijri, I.1
Sýkorová, Z.2
Oehl, F.3
Ineichen, K.4
Mader, P.5
Wiemken, A.6
Redecker, D.7
-
25
-
-
84869886141
-
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
-
Ihrmark K., Bödeker I.T.M., Cruz-Martinez K., Friberg H., Kubártová A., Schenck J., Strid Y., Stenlid J., Brandström-Durling M., Clemmensen K.E., et al. New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities. FEMS Microbiol. Ecol. 2012, 82:666-677.
-
(2012)
FEMS Microbiol. Ecol.
, vol.82
, pp. 666-677
-
-
Ihrmark, K.1
Bödeker, I.T.M.2
Cruz-Martinez, K.3
Friberg, H.4
Kubártová, A.5
Schenck, J.6
Strid, Y.7
Stenlid, J.8
Brandström-Durling, M.9
Clemmensen, K.E.10
-
26
-
-
0026097015
-
Dynamics of vesicular-arbuscular mycorrhizae during old field succession
-
Johnson N.C., Zak D.R., Tilman D., Pfleger F.L. Dynamics of vesicular-arbuscular mycorrhizae during old field succession. Oecologia 1991, 86:349-358.
-
(1991)
Oecologia
, vol.86
, pp. 349-358
-
-
Johnson, N.C.1
Zak, D.R.2
Tilman, D.3
Pfleger, F.L.4
-
27
-
-
33847281506
-
Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data
-
Jumpponen A. Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data. Microb. Ecol. 2007, 53:233-246.
-
(2007)
Microb. Ecol.
, vol.53
, pp. 233-246
-
-
Jumpponen, A.1
-
28
-
-
80052024023
-
Global diversity and distribution of arbuscular mycorrhizal fungi
-
Kivlin S.N., Hawkes C.V., Treseder K.K. Global diversity and distribution of arbuscular mycorrhizal fungi. Soil Biol Biochem. 2011, 43:2294-2303.
-
(2011)
Soil Biol Biochem.
, vol.43
, pp. 2294-2303
-
-
Kivlin, S.N.1
Hawkes, C.V.2
Treseder, K.K.3
-
29
-
-
84857917948
-
Surprising spectra of root-associated fungi in submerged aquatic plants
-
Kohout P., Sýkorová Z., Čtvrtlíková M., Rydlová J., Suda J., Vohník M., Sudová R. Surprising spectra of root-associated fungi in submerged aquatic plants. FEMS Microbiol. Ecol. 2012, 80:216-235.
-
(2012)
FEMS Microbiol. Ecol.
, vol.80
, pp. 216-235
-
-
Kohout, P.1
Sýkorová, Z.2
Čtvrtlíková, M.3
Rydlová, J.4
Suda, J.5
Vohník, M.6
Sudová, R.7
-
30
-
-
34848907431
-
Molecular study of arbuscular mycorrhizal fungi colonizing the sporophyte of the eusporangiate rattlesnake fern (Botrychium virginianum, Ophioglossaceae)
-
Kovács G.M., Balazs T., Penzes Z. Molecular study of arbuscular mycorrhizal fungi colonizing the sporophyte of the eusporangiate rattlesnake fern (Botrychium virginianum, Ophioglossaceae). Mycorrhiza 2007, 17:597-605.
-
(2007)
Mycorrhiza
, vol.17
, pp. 597-605
-
-
Kovács, G.M.1
Balazs, T.2
Penzes, Z.3
-
31
-
-
66649137511
-
DNA-based species level detection of Glomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi
-
Krüger M., Stockinger H., Krüger C., Schüssler A. DNA-based species level detection of Glomeromycota: one PCR primer set for all arbuscular mycorrhizal fungi. New Phytol. 2009, 183:212-223.
-
(2009)
New Phytol.
, vol.183
, pp. 212-223
-
-
Krüger, M.1
Stockinger, H.2
Krüger, C.3
Schüssler, A.4
-
32
-
-
84856534511
-
Phylogenetic references data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level
-
Krüger M., Krüger C., Walker C., Stockinger H., Schüssler A. Phylogenetic references data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New Phytol. 2012, 193:970-984.
-
(2012)
New Phytol.
, vol.193
, pp. 970-984
-
-
Krüger, M.1
Krüger, C.2
Walker, C.3
Stockinger, H.4
Schüssler, A.5
-
33
-
-
47249086082
-
Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi
-
Lee J., Lee S., Young J.P.W. Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi. FEMS Microbiol. Ecol. 2008, 65:339-349.
-
(2008)
FEMS Microbiol. Ecol.
, vol.65
, pp. 339-349
-
-
Lee, J.1
Lee, S.2
Young, J.P.W.3
-
34
-
-
80054118626
-
Diverse communities of arbuscular mycorrhizal fungi inhabit sites with very high altitude in Tibet Plateau
-
Liu Y.J., He J.X., Shi G.X., An L.Z., Öpik M., Feng H.Y. Diverse communities of arbuscular mycorrhizal fungi inhabit sites with very high altitude in Tibet Plateau. FEMS Microbiol. Ecol. 2013, 78:355-365.
-
(2013)
FEMS Microbiol. Ecol.
, vol.78
, pp. 355-365
-
-
Liu, Y.J.1
He, J.X.2
Shi, G.X.3
An, L.Z.4
Öpik, M.5
Feng, H.Y.6
-
35
-
-
84881612898
-
The influence of environmental degradation processes on the arbuscular mycorrhizal fungal community associated with yew (Taxus baccata L.), an endangered tree species from Mediterranean ecosystems of Southeast Spain
-
Lopéz-García A., Hempel S., Miranda J.D., Rillig M.C., Barea J.M., Azcón-Aguilar C. The influence of environmental degradation processes on the arbuscular mycorrhizal fungal community associated with yew (Taxus baccata L.), an endangered tree species from Mediterranean ecosystems of Southeast Spain. Plant Soil. 2013, 370:355-366.
-
(2013)
Plant Soil.
, vol.370
, pp. 355-366
-
-
Lopéz-García, A.1
Hempel, S.2
Miranda, J.D.3
Rillig, M.C.4
Barea, J.M.5
Azcón-Aguilar, C.6
-
36
-
-
77955262221
-
Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach
-
Lumini E., Orgiazzi A., Borriello R., Bonfante P., Bianciotto V. Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach. Environ. Microbiol. 2010, 12:2165-2179.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 2165-2179
-
-
Lumini, E.1
Orgiazzi, A.2
Borriello, R.3
Bonfante, P.4
Bianciotto, V.5
-
37
-
-
84859610563
-
Linking symbiont community structures in a model arbuscular mycorrhizal system
-
Meadow J.F., Zabinski C.A. Linking symbiont community structures in a model arbuscular mycorrhizal system. New Phytol. 2012, 194:800-809.
-
(2012)
New Phytol.
, vol.194
, pp. 800-809
-
-
Meadow, J.F.1
Zabinski, C.A.2
-
38
-
-
58049218990
-
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
-
Milne I., Lindner D., Bayer M., Husmeier D., McGuire G., Marshall D.F., Wright F. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 2009, 25:126-127.
-
(2009)
Bioinformatics
, vol.25
, pp. 126-127
-
-
Milne, I.1
Lindner, D.2
Bayer, M.3
Husmeier, D.4
McGuire, G.5
Marshall, D.F.6
Wright, F.7
-
39
-
-
34250873935
-
Evaluation of LSU rRNA-gene PCR primers for analysis of arbuscular mycorrhizal fungal communities via terminal restriction fragment length polymorphism analysis
-
Mummey D.L., Rillig M.C. Evaluation of LSU rRNA-gene PCR primers for analysis of arbuscular mycorrhizal fungal communities via terminal restriction fragment length polymorphism analysis. J.Microbiol. Methods 2007, 70:200-204.
-
(2007)
J.Microbiol. Methods
, vol.70
, pp. 200-204
-
-
Mummey, D.L.1
Rillig, M.C.2
-
40
-
-
36049004436
-
Taxonomic reliability of DNA sequences in public sequences databases: a fungal perspective
-
Nilsson R.H., Ryberg M., Kristiansson E., Abarenkov K., Larsson K.H., Kõljalg U. Taxonomic reliability of DNA sequences in public sequences databases: a fungal perspective. PLoS One 2006, 1:e59.
-
(2006)
PLoS One
, vol.1
-
-
Nilsson, R.H.1
Ryberg, M.2
Kristiansson, E.3
Abarenkov, K.4
Larsson, K.H.5
Kõljalg, U.6
-
41
-
-
77956292257
-
An open source chimera checker for the fungal ITS region
-
Nilsson R.H., Abarenkov K., Veldre V., Nylinder S., De Wit P., Brosche S., Alfredsson J.F., Ryberg M., Kristiansson E. An open source chimera checker for the fungal ITS region. Mol. Ecol. Resour. 2010, 10:1076-1081.
-
(2010)
Mol. Ecol. Resour.
, vol.10
, pp. 1076-1081
-
-
Nilsson, R.H.1
Abarenkov, K.2
Veldre, V.3
Nylinder, S.4
De Wit, P.5
Brosche, S.6
Alfredsson, J.F.7
Ryberg, M.8
Kristiansson, E.9
-
42
-
-
0345526437
-
Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils
-
Öpik M., Moora M., Liira J., Koljalg U., Zobel M., Sen R. Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils. New Phytol. 2003, 160:581-593.
-
(2003)
New Phytol.
, vol.160
, pp. 581-593
-
-
Öpik, M.1
Moora, M.2
Liira, J.3
Koljalg, U.4
Zobel, M.5
Sen, R.6
-
43
-
-
48249153782
-
High diversity of arbuscular mycorrhizal fungi in a boreal herb-rich coniferous forest
-
Öpik M., Moora M., Zobel M., Saks U., Wheatley R., Wright F., Daniell T. High diversity of arbuscular mycorrhizal fungi in a boreal herb-rich coniferous forest. New Phytol. 2008, 179:867-876.
-
(2008)
New Phytol.
, vol.179
, pp. 867-876
-
-
Öpik, M.1
Moora, M.2
Zobel, M.3
Saks, U.4
Wheatley, R.5
Wright, F.6
Daniell, T.7
-
44
-
-
70349525156
-
Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
-
Öpik M., Metsis M., Daniell T.J., Zobel M., Moora M. Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytol. 2009, 184:424-437.
-
(2009)
New Phytol.
, vol.184
, pp. 424-437
-
-
Öpik, M.1
Metsis, M.2
Daniell, T.J.3
Zobel, M.4
Moora, M.5
-
45
-
-
77956292194
-
The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
-
Öpik M., Vanatoa A., Vanatoa E., Moora M., Davison J., Kalwij J.M., Reier U., Zobel M. The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota). New Phytol. 2010, 188:223-241.
-
(2010)
New Phytol.
, vol.188
, pp. 223-241
-
-
Öpik, M.1
Vanatoa, A.2
Vanatoa, E.3
Moora, M.4
Davison, J.5
Kalwij, J.M.6
Reier, U.7
Zobel, M.8
-
46
-
-
78751671066
-
Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories
-
Powell J.R., Monaghan M.T., Öpik M., Rillig M.C. Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories. Mol. Ecol. 2011, 20:655-666.
-
(2011)
Mol. Ecol.
, vol.20
, pp. 655-666
-
-
Powell, J.R.1
Monaghan, M.T.2
Öpik, M.3
Rillig, M.C.4
-
47
-
-
79961135005
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team. R: a Language and Environment for Statistical Computing 2011, R Foundation for Statistical Computing, Vienna, Austria.
-
(2011)
R: a Language and Environment for Statistical Computing
-
-
-
48
-
-
0033812194
-
Specific PCR primers to identify arbuscular mycorrhizal fungi within colonized roots
-
Redecker D. Specific PCR primers to identify arbuscular mycorrhizal fungi within colonized roots. Mycorrhiza 2000, 10:73-80.
-
(2000)
Mycorrhiza
, vol.10
, pp. 73-80
-
-
Redecker, D.1
-
49
-
-
0141994338
-
Molecular identification of arbuscular mycorrhizal fungi in roots: perspectives and problems
-
Redecker D., Hijri I., Wiemken A. Molecular identification of arbuscular mycorrhizal fungi in roots: perspectives and problems. Folia Geobot. 2003, 38:113-124.
-
(2003)
Folia Geobot.
, vol.38
, pp. 113-124
-
-
Redecker, D.1
Hijri, I.2
Wiemken, A.3
-
50
-
-
34047238421
-
Anovel clade of sporocarp-forming species of glomeromycotan fungi in the Diversisporales lineage
-
Redecker D., Raab P., Oehl F., Camacho F.J., Courtecuisse R. Anovel clade of sporocarp-forming species of glomeromycotan fungi in the Diversisporales lineage. Mycol. Prog. 2007, 6:35-44.
-
(2007)
Mycol. Prog.
, vol.6
, pp. 35-44
-
-
Redecker, D.1
Raab, P.2
Oehl, F.3
Camacho, F.J.4
Courtecuisse, R.5
-
51
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Schoch C.L., Seifert K.A., Huhndorf S., Robert V., Spounge J.L., Levesque C.A., Chen W. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:6241-6246.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spounge, J.L.5
Levesque, C.A.6
Chen, W.7
-
52
-
-
0035101423
-
Analysis of partial Glomales SSU rRNA gene sequences: implications for primer design and phylogeny
-
Schüssler A., Gehrig H., Schwarzott D., Walker C. Analysis of partial Glomales SSU rRNA gene sequences: implications for primer design and phylogeny. Mycol. Res. 2001, 105:5-15.
-
(2001)
Mycol. Res.
, vol.105
, pp. 5-15
-
-
Schüssler, A.1
Gehrig, H.2
Schwarzott, D.3
Walker, C.4
-
53
-
-
0026513188
-
Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots
-
Simon L., Lalonde M., Bruns T.D. Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots. Appl. Environ. Microbiol. 1992, 58:291-295.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 291-295
-
-
Simon, L.1
Lalonde, M.2
Bruns, T.D.3
-
54
-
-
66649113903
-
'Glomus intraradices DAOM197198' a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices
-
Stockinger H., Walker C., Schüssler A. 'Glomus intraradices DAOM197198' a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices. New Phytol. 2009, 183:1176-1187.
-
(2009)
New Phytol.
, vol.183
, pp. 1176-1187
-
-
Stockinger, H.1
Walker, C.2
Schüssler, A.3
-
55
-
-
77954044517
-
DNA barcoding of arbuscular mycorrhizal fungi
-
Stockinger H., Krüger M., Schüssler A. DNA barcoding of arbuscular mycorrhizal fungi. New Phytol. 2010, 187:461-474.
-
(2010)
New Phytol.
, vol.187
, pp. 461-474
-
-
Stockinger, H.1
Krüger, M.2
Schüssler, A.3
-
56
-
-
36448961956
-
The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment
-
Sýkorová Z., Ineichen K., Wiemken A., Redecker D. The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment. Mycorrhiza 2007, 18:1-14.
-
(2007)
Mycorrhiza
, vol.18
, pp. 1-14
-
-
Sýkorová, Z.1
Ineichen, K.2
Wiemken, A.3
Redecker, D.4
-
57
-
-
84855280593
-
Long-term tracing of Rhizophagus irregularis isolate BEG140 inoculated on Phalaris arundinacea in a coal mine spoil bank
-
Sýkorová Z., Börstler B., Zvolenská S., Fehrer J., Gryndler M., Vosátka M., Redecker D. Long-term tracing of Rhizophagus irregularis isolate BEG140 inoculated on Phalaris arundinacea in a coal mine spoil bank. Mycorrhiza 2012, 22:69-80.
-
(2012)
Mycorrhiza
, vol.22
, pp. 69-80
-
-
Sýkorová, Z.1
Börstler, B.2
Zvolenská, S.3
Fehrer, J.4
Gryndler, M.5
Vosátka, M.6
Redecker, D.7
-
58
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
59
-
-
77956283658
-
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
-
Tedersoo L., Nilsson R.H., Abarenkov K., Jairus T., Sadam A., Saar I., Bahram M., Bechem E., Chuyong G., Kõljalg U. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol. 2010, 188:291-301.
-
(2010)
New Phytol.
, vol.188
, pp. 291-301
-
-
Tedersoo, L.1
Nilsson, R.H.2
Abarenkov, K.3
Jairus, T.4
Sadam, A.5
Saar, I.6
Bahram, M.7
Bechem, E.8
Chuyong, G.9
Kõljalg, U.10
-
60
-
-
80052852504
-
Tidying up International Nucleotide Sequence Databases: ecological, geographical and sequence quality annotation of ITS sequences of mycorrhizal fungi
-
Tedersoo L., Abarenkov K., Nilsson R.H., Schüssler A., Grelet G.A., Kohout P., Oja J., Bonito G.M., Veldre V., Jairus T., et al. Tidying up International Nucleotide Sequence Databases: ecological, geographical and sequence quality annotation of ITS sequences of mycorrhizal fungi. PLoS One 2011, 6:e24940.
-
(2011)
PLoS One
, vol.6
-
-
Tedersoo, L.1
Abarenkov, K.2
Nilsson, R.H.3
Schüssler, A.4
Grelet, G.A.5
Kohout, P.6
Oja, J.7
Bonito, G.M.8
Veldre, V.9
Jairus, T.10
-
61
-
-
0032901436
-
Visualization of ribosomal DNA loci in spore interphasic nuclei of glomalean fungi by fluorescence in situ hybridization
-
Trouvelot S., van Tuinen D., Hijri M., Gianinazzi-Pearson V. Visualization of ribosomal DNA loci in spore interphasic nuclei of glomalean fungi by fluorescence in situ hybridization. Mycorrhiza 1999, 8:203-206.
-
(1999)
Mycorrhiza
, vol.8
, pp. 203-206
-
-
Trouvelot, S.1
van Tuinen, D.2
Hijri, M.3
Gianinazzi-Pearson, V.4
-
62
-
-
0032487856
-
Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity
-
van der Heijden M.G.A., Klironomos J.N., Ursic M., Moutoglis P., Streitwolf-Engel R., Boller T., Wiemken A., Sanders I.R. Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature 1998, 396:69-72.
-
(1998)
Nature
, vol.396
, pp. 69-72
-
-
van der Heijden, M.G.A.1
Klironomos, J.N.2
Ursic, M.3
Moutoglis, P.4
Streitwolf-Engel, R.5
Boller, T.6
Wiemken, A.7
Sanders, I.R.8
-
63
-
-
0032128137
-
Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR
-
van Tuinen D., Jacquot E., Zhao B., Gollotte A., Gianinazzi-Pearson V. Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA-targeted nested PCR. Mol. Ecol. 1998, 7:879-887.
-
(1998)
Mol. Ecol.
, vol.7
, pp. 879-887
-
-
van Tuinen, D.1
Jacquot, E.2
Zhao, B.3
Gollotte, A.4
Gianinazzi-Pearson, V.5
-
64
-
-
36749043174
-
Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA
-
Vandenkoornhuyse P., Mahe S., Ineson P., Staddon P., Ostle N., Cliquet J.B., Francez A.J., Fitter A.H., Young J.P.W. Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:16970-16975.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 16970-16975
-
-
Vandenkoornhuyse, P.1
Mahe, S.2
Ineson, P.3
Staddon, P.4
Ostle, N.5
Cliquet, J.B.6
Francez, A.J.7
Fitter, A.H.8
Young, J.P.W.9
-
65
-
-
33847157830
-
Molecular phylogeny and new taxa in the Archaeosporales (Glomeromycota): Ambispora fennica gen. sp nov., Ambisporaceae fam. nov., and emendation of Archaeospora and Archaeosporaceae
-
Walker C., Vestberg M., Demircik F., Stockinger H., Saito M., Sawaki H., Nishmura I., Schüssler A. Molecular phylogeny and new taxa in the Archaeosporales (Glomeromycota): Ambispora fennica gen. sp nov., Ambisporaceae fam. nov., and emendation of Archaeospora and Archaeosporaceae. Mycol. Res. 2007, 111:137-153.
-
(2007)
Mycol. Res.
, vol.111
, pp. 137-153
-
-
Walker, C.1
Vestberg, M.2
Demircik, F.3
Stockinger, H.4
Saito, M.5
Sawaki, H.6
Nishmura, I.7
Schüssler, A.8
-
66
-
-
80052635574
-
Flooding greatly affects the diversity of arbuscular mycorrhizal fungi communities in the roots of wetland plants
-
Wang Y., Huang Y., Qiu Q., Xin G., Yang Z., Shi S. Flooding greatly affects the diversity of arbuscular mycorrhizal fungi communities in the roots of wetland plants. PLoS One 2011, 6:e24512.
-
(2011)
PLoS One
, vol.6
-
-
Wang, Y.1
Huang, Y.2
Qiu, Q.3
Xin, G.4
Yang, Z.5
Shi, S.6
-
67
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Academic Press, San Diego, CA, USA, M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.)
-
White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols, a Guide to Methods and Applications 1990, Academic Press, San Diego, CA, USA. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
-
(1990)
PCR Protocols, a Guide to Methods and Applications
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
|