A transcriptomic-phylogenomic analysis of the evolutionary relationships of flatworms

Current Biology

Volumn 25, Issue 10, 2015, Pages 1347-1353

  Egger, Bernhard ^a,b   Lapraz, François ^a   Tomiczek, Bartłomiej ^a   Müller, Steven ^a   Dessimoz, Christophe ^a,c   Girstmair, Johannes ^a   Škunca, Nives ^d   Rawlinson, Kate A ^a   Cameron, Christopher B ^e   Beli, Elena ^e,f   Todaro, M Antonio ^g   Gammoudi, Mehrez ^h   Noreña, Carolina ⁱ   Telford, Maximilian J ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY OF INNSBRUCK   (Austria)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

^d ETH ZURICH   (Switzerland)

^e UNIVERSITÉ DE MONTRÉAL   (Canada)

^f UNIVERSITY OF SALENTO   (Italy)

^g UNIVERSITY OF MODENA AND REGGIO EMILIA   (Italy)

^h UNIVERSITY OF TUNIS EL MANAR   (Tunisia)

ⁱ MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BOTHRIOPLANIDA; CATENULIDA; CESTODA; LECITHOEPITHELIATA; LOPHOTROCHOZOA; MACROSTOMORPHA; METAZOA; MONOGENEA; NEODERMATA; PLATYHELMINTHES; POLYCLADIDA; PROSERIATA; RHABDOCOELA; TREMATODA; TRICLADIDA;

ANIMAL; CENTROMERE; EVOLUTION; FEMALE; GENE EXPRESSION PROFILING; GENETICS; MALE; NOMENCLATURE; OVUM; PHYLOGENY; PHYSIOLOGY; PLATYHELMINTH; SPERMATOZOON; TURBELLARIA;

ANIMALS; BIOLOGICAL EVOLUTION; CENTROMERE; FEMALE; GENE EXPRESSION PROFILING; MALE; OVUM; PHYLOGENY; PLANARIANS; PLATYHELMINTHS; SPERMATOZOA; TERMINOLOGY AS TOPIC;

EID: 84929607322     PISSN: 09609822     EISSN: 18790445     Source Type: Journal    
DOI: 10.1016/j.cub.2015.03.034     Document Type: Article

References (35)

1. U. Ehlers Das Phylogenetische System der Plathelminthes First Edition 1985 Gustav Fischer Verlag
2. C.E. Laumer, and G. Giribet Inclusive taxon sampling suggests a single, stepwise origin of ectolecithality in Platyhelminthes Biol. J. Linn. Soc. Lond. 111 2014 570 588
3. N. Lartillot, T. Lepage, and S. Blanquart PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating Bioinformatics 25 2009 2286 2288
4. S. Guindon, J.F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk, and O. Gascuel New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 Syst. Biol. 59 2010 307 321
5. A. Stamatakis RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies Bioinformatics 30 2014 1312 1313
6. A.M.A. Aguinaldo, J.M. Turbeville, L.S. Linford, M.C. Rivera, J.R. Garey, R.A. Raff, and J.A. Lake Evidence for a clade of nematodes, arthropods and other moulting animals Nature 387 1997 489 493
7. T.H. Struck, A.R. Wey-Fabrizius, A. Golombek, L. Hering, A. Weigert, C. Bleidorn, S. Klebow, N. Iakovenko, B. Hausdorf, and M. Petersen Platyzoan paraphyly based on phylogenomic data supports a noncoelomate ancestry of spiralia Mol. Biol. Evol. 31 2014 1833 1849
8. M.J. Telford, E.A. Herniou, R.B. Russell, and D.T.J. Littlewood Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms Proc. Natl. Acad. Sci. USA 97 2000 11359 11364
9. J.P.S. Smith, S. Tyler, and R.M. Rieger Is the Turbellaria polyphyletic? Hydrobiologia 132 1986 13 21
10. B. Egger, D. Steinke, H. Tarui, K. De Mulder, D. Arendt, G. Borgonie, N. Funayama, R. Gschwentner, V. Hartenstein, and B. Hobmayer To be or not to be a flatworm: the acoel controversy PLoS ONE 4 2009 e5502
11. H. Philippe, H. Brinkmann, R.R. Copley, L.L. Moroz, H. Nakano, A.J. Poustka, A. Wallberg, K.J. Peterson, and M.J. Telford Acoelomorph flatworms are deuterostomes related to Xenoturbella Nature 470 2011 255 258
12. T. Cavalier-Smith A revised six-kingdom system of life Biol. Rev. Camb. Philos. Soc. 73 1998 203 266
13. A. Hejnol, M. Obst, A. Stamatakis, M. Ott, G.W. Rouse, G.D. Edgecombe, P. Martinez, J. Baguñà, X. Bailly, and U. Jondelius Assessing the root of bilaterian animals with scalable phylogenomic methods Proc. Biol. Sci. 276 2009 4261 4270
14. A.R. Wey-Fabrizius, H. Herlyn, B. Rieger, D. Rosenkranz, A. Witek, D.B.M. Welch, I. Ebersberger, and T. Hankeln Transcriptome data reveal syndermatan relationships and suggest the evolution of endoparasitism in Acanthocephala via an epizoic stage PLoS ONE 9 2014 e88618
15. J. Mallatt, C.W. Craig, and M.J. Yoder Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction Mol. Phylogenet. Evol. 55 2010 1 17
16. J. Mallatt, C.W. Craig, and M.J. Yoder Nearly complete rRNA genes from 371 Animalia: updated structure-based alignment and detailed phylogenetic analysis Mol. Phylogenet. Evol. 64 2012 603 617
17. C. Nielsen Animal Evolution Third Edition 2012 Oxford University Press
18. J.-L. Justine Spermatozoa as phylogenetic characters for the Platyhelminthes D.T.J. Littlewood, R.A. Bray, Interrelations of the Platyhelminthes (The Systematics Association Special Volume Series 60) 2001 Taylor & Francis 231 238
19. J.M. Martín-Durán, and B. Egger Developmental diversity in free-living flatworms Evodevo 3 2012 7
20. B.I. Joffe, and E.E. Kornakova Flatworm phylogeneticist: Between molecular hammer and morphological anvil D.T.J. Littlewood, R.A. Bray, Interrelations of the Platyhelminthes (The Systematics Association Special Volume Series 60) 2001 Taylor & Francis 279 291
21. T.G. Karling On the genus Gnosonesima Reisinger (Turbellaria) Sarsia 33 1968 81 108
22. D.T.J. Littlewood, K. Rohde, and K.A. Clough The interrelationships of all major groups of Platyhelminthes: phylogenetic evidence from morphology and molecules Biol. J. Linn. Soc. Lond. 66 1999 75 114
23. J. Baguñà, S. Carranza, J. Paps, I. Ruiz-Trillo, and M. Riutort Molecular taxonomy and phylogeny of the Tricladida D.T.J. Littlewood, R.A. Bray, Interrelations of the Platyhelminthes (The Systematics Association Special Volume Series 60) 2001 Taylor & Francis 49 56
24. K. Larsson, and U. Jondelius Phylogeny of Catenulida and support for Platyhelminthes Org. Divers. Evol. 8 2008 378 387
25. A.E. Lockyer, P.D. Olson, and D.T.J. Littlewood Utility of complete large and small subunit rRNA genes in resolving the phylogeny of the Neodermata (Platyhelminthes): implications and a review of the cercomer theory Biol. J. Linn. Soc. Lond. 78 2003 155 171
26. J. Felsenstein Cases in which parsimony or compatibility methods will be positively misleading Syst. Zool. 27 1978 401 410
27. J. Azimzadeh, M.L. Wong, D.M. Downhour, A. Sánchez Alvarado, and W.F. Marshall Centrosome loss in the evolution of planarians Science 335 2012 461 463
28. T.G. Karling On the anatomy and affinities of the turbellarian orders N.W. Riser, M.P. Morse, Biology of the Turbellaria 1974 McGraw-Hill 1 16
29. W.R. Willems, A. Wallberg, U. Jondelius, D.T.J. Littlewood, T. Backeljau, E.R. Schockaert, and T.J. Artois Filling a gap in the phylogeny of flatworms: relationships within the Rhabdocoela (Platyhelminthes), inferred from 18S ribosomal DNA sequences Zool. Scr. 35 2006 1 17
30. J.-K. Park, K.-H. Kim, S. Kang, W. Kim, K.S. Eom, and D.T.J. Littlewood A common origin of complex life cycles in parasitic flatworms: evidence from the complete mitochondrial genome of Microcotyle sebastis (Monogenea: Platyhelminthes) BMC Evol. Biol. 7 2007 11
31. E.M. Perkins, S.C. Donnellan, T. Bertozzi, and I.D. Whittington Closing the mitochondrial circle on paraphyly of the Monogenea (Platyhelminthes) infers evolution in the diet of parasitic flatworms Int. J. Parasitol. 40 2010 1237 1245
32. B. Fromm, M.M. Worren, C. Hahn, E. Hovig, and L. Bachmann Substantial loss of conserved and gain of novel MicroRNA families in flatworms Mol. Biol. Evol. 30 2013 2619 2628
33. C. Hahn, B. Fromm, and L. Bachmann Comparative genomics of flatworms (Platyhelminthes) reveals shared genomic features of ecto- and endoparastic Neodermata Genome Biol. Evol. 6 2014 1105 1117
34. R.M. Rieger, S. Tyler, J.P.S. Smith, and G.E. Rieger Platyhelminthes: Turbellaria F.W. Harrison, B.J. Bogitsh, Microscopic Anatomy of Invertebrates, Volume 3: Platyhelminthes and Nemertinea 1991 Wiley 7 140
35. M. Noren, and U. Jondelius The phylogenetic position of the Prolecithophora (Rhabditophora, 'Platyhelminthes') Zool. Scr. 31 2002 403 414