Protein expression profiling in head fragments during planarian regeneration after amputation

Development Genes and Evolution

Volumn 225, Issue 2, 2015, Pages 79-93

  Chen, Xiaoguang ^a   Xu, Cunshuan ^b  

^a HENAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b HENAN NORMAL UNIVERSITY   (China)

Author keywords

Decapitation; Head regeneration; Planarian; Proteomic profiling

Indexed keywords

CARRIER PROTEIN; HELMINTH PROTEIN; TRANSCRIPTOME;

ANIMAL; CYTOLOGY; GENETIC TRANSCRIPTION; GENETICS; HEAD; METABOLISM; PHYSIOLOGY; PROTEIN SYNTHESIS; REAL TIME POLYMERASE CHAIN REACTION; REGENERATION; SIGNAL TRANSDUCTION; TURBELLARIA;

ANIMALS; CARRIER PROTEINS; HEAD; HELMINTH PROTEINS; PLANARIANS; PROTEIN BIOSYNTHESIS; REAL-TIME POLYMERASE CHAIN REACTION; REGENERATION; SIGNAL TRANSDUCTION; TRANSCRIPTION, GENETIC; TRANSCRIPTOME;

EID: 84929514338     PISSN: 0949944X     EISSN: 1432041X     Source Type: Journal    
DOI: 10.1007/s00427-015-0494-3     Document Type: Article

References (67)

1. Adamidi C, Wang Y, Gruen D et al (2011) De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics. Genome Res 21:1193–1200
2. Almuedo-Castillo M, Sureda-Gómez M, Adell T (2012) Wnt signaling in planarians: new answers to old questions. Int J Dev Biol 56:53–65
3. Baumeister P, Luo S, Skarnes WC et al (2005) Endoplasmic reticulum stress induction of the Grp78/BiP promoter: activating mechanisms mediated by YY1 and its interactive chromatin modifiers. Mol Cell Biol 25:4529–4540
4. Beane WS, Morokuma J, Adams DS, Levin M (2011) A chemical genetics approach reveals H, K-ATPase-mediated membrane voltage is required for planarian head regeneration. Chem Biol 18:77–89
5. Bocchinfuso DG, Taylor P, Ross E et al (2012) Proteomic profiling of the planarian Schmidtea mediterranea and its mucous reveals similarities with human secretions and those predicted for parasitic flatworms. Mol Cell Proteomics 11:681–691
6. Böser A, Drexler HC, Reuter H et al (2013) SILAC proteomics of planarians identifies Ncoa5 as a conserved component of pluripotent stem cells. Cell Rep 5:1142–1155
7. Casarosa S, Andreazzoli M, Simeone A, Barsacchi G (1997) Xrx1, a novel Xenopus homeobox gene expressed during eye and pineal gland development. Mech Dev 61:187–198
8. Cebrià F, Newmark PA (2005) Planarian homologs of netrin and netrin receptor are required for proper regeneration of the central nervous system and the maintenance of nervous system architecture. Development 132:3691–3703
9. Cebrià F, Newmark PA (2007) Morphogenesis defects are associated with abnormal nervous system regeneration following roboA RNAi in planarians. Development 134:833–837
10. Cebria F, Nakazawa M, Mineta K et al (2002) Dissecting planarian central nervous system regeneration by the expression of neural-specific genes. Develop Growth Differ 44:135–146
11. del Marmol V, Ito S, Bouchard B et al (1996) Cysteine deprivation promotes eumelanogenesis in human melanoma cells. J Investig Dermatol 107:698–702
12. Dong ZM (2011) Eye morphogenesis and expression analysis of eye-related genes during planarian head regeneration (D). Henan Normal University, Xinxiang
13. Dosch R, Niehrs C (2000) Requirement for anti-dorsalizing morphogenetic protein in organizer patterning. Mech Dev 90:195–203
14. Euler-Taimor G, Heger J (2006) The complex pattern of SMAD signaling in the cardiovascular system. Cardiovasc Res 69:15–25
15. Fagotti A, Simoncelli F, Di Rosa I, Pascolini R (2006) Cytoskeletal proteins and morphogenesis in planarians. Invert Surviv J 3:117–124
16. Felix DA, Aboobaker AA (2010) The TALE class homeobox gene Smed-prep defines the anterior compartment for head regeneration. PLoS Genet 6:e1000915
17. Fernández-Taboada E, Rodríguez-Esteban G, Saló E, Abril JF (2011) A proteomics approach to decipher the molecular nature of planarian stem cells. BMC Genomics 12:133
18. Ghosh S, Roy S, Seguin C, Bryant SV, Gardiner DM (2008) Analysis of the expression and function of Wnt-5a and Wnt-5b in developing and regenerating axolotl (Ambystoma mexicanum) limbs. Develop Growth Differ 50:289–297
19. Goodman R, Lin-Ye A, Geddis MS et al (2009) Extremely low frequency electromagnetic fields activate the ERK cascade, increase hsp70 protein levels and promote regeneration in Planaria. Int J Radiat Biol 85:851–859
20. Gurley KA, Rink JC, Sánchez Alvarado A (2008) Beta-catenin defines head versus tail identity during planarian regeneration and homeostasis. Science 319:323–327
21. Gurley KA, Elliott SA, Simakov O et al (2010) Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response. Dev Biol 347:24–39
22. Hollenbach JP, Resch AM, Palakodeti D, Graveley BR, Heinen CD (2011) Loss of DNA mismatch repair imparts a selective advantage in planarian adult stem cells. PLoS One 6:e21808
23. Hollis T, Stattel JM, Walther DS, Richardson CC, Ellenberger T (2001) Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7. Proc Natl Acad Sci U S A 98:9557–9562
24. Hubert A, Henderson JM, Ross KG et al (2013) Epigenetic regulation of planarian stem cells by the SET1/MLL family of histone methyltransferases. Epigenetics 8:79–91
25. Iglesias M, Gomez-Skarmeta JL, Saló E, Adell T (2008) Silencing of Smed-betacatenin1 generates radial-like hypercephalized planarians. Development 135:1215–1221
26. Iglesias M, Almuedo-Castillo M, Aboobaker AA, Saló E (2011) Early planarian brain regeneration is independent of blastema polarity mediated by the Wnt/β-catenin pathway. Dev Biol 358:68–78
27. Inoue T, Kumamoto H, Okamoto K et al (2004) Morphological and functional recovery of the planarian photosensing system during head regeneration. Zool Sci 21:275–283
28. Kao D, Felix D, Aboobaker A (2013) The planarian regeneration transcriptome reveals a shared but temporally shifted regulatory program between opposing head and tail scenarios. BMC Genomics 14:797
29. Kim SH, Cho KW, Choi HS et al (2009) The forkhead transcription factor Foxc2 stimulates osteoblast differentiation. Biochem Biophys Res Commun 386:532–536
30. Kim J, Parrish AB, Kurokawa M et al (2012) Rsk-mediated phosphorylation and 14-3-3ɛ binding of Apaf-1 suppresses cytochrome c-induced apoptosis. EMBO J 31:1279–1292
31. Leyns L, Bouwmeester T, Kim SH, Piccolo S, De Robertis EM (1997) Frzb-1 is a secreted antagonist of Wnt signaling expressed in the Spemann organizer. Cell 88:747–756
32. Li ZW, Li ZY (2012) Glucose regulated protein 78: a critical link between tumor microenvironment and cancer hallmarks. Biochim Biophys Acta 1826:13–22
33. Mannini L, Deri P, Picchi J, Batistoni R (2008) Expression of a retinal homeobox (Rx) gene during planarian regeneration. Int J Dev Biol 52:1113–1117
34. Martelly I, Molla A, Thomasset M, Le Moigne A (1983) Planarian regeneration: in vivo and in vitro effects of calcium and calmodulin on DNA synthesis. Cell Differ 13:25–34
35. Martinez-De Luna RI, Kelly LE, El-Hodiri HM (2011) The retinal homeobox (Rx) gene is necessary for retinal regeneration. Dev Biol 353:10–18
36. Mathers PH, Grinberg A, Mahon KA, Jamrich M (1997) The Rx homeobox gene is essential for vertebrate eye development. Nature 387:603–607
37. Molina MD, Saló E, Cebrià F (2007) The BMP pathway is essential for re-specification and maintenance of the dorsoventral axis in regenerating and intact planarians. Dev Biol 311:79–94
38. Morgan TH (1904) Polarity and axial heteromophosis. Am Nat 38:502–505
39. Naviaux RK, Le TP, Bedelbaeva K et al (2009) Retained features of embryonic metabolism in the adult MRL mouse. Mol Genet Metab 96:133–144
40. Nogi T, Zhang D, Chan JD, Marchant JS (2009) A novel biological activity of praziquantel requiring voltage-operated Ca2+ channel beta subunits: subversion of flatworm regenerative polarity. PLoS Negl Trop Dis 3:e464
41. Orii H, Watanabe K (2007) Bone morphogenetic protein is required for dorso-ventral patterning in the planarian Dugesia japonica. Develop Growth Differ 49:345–349
42. Oviedo NJ, Levin M (2007) smedinx-11 is a planarian stem cell gap junction gene required for regeneration and homeostasis. Development 134:3121–3131
43. Patergnani S, Suski JM, Agnoletto C et al (2011) Calcium signaling around mitochondria associated membranes (MAMs). Cell Commun Signal 9:19
44. Petersen CP, Reddien PW (2008) Smed-betacatenin-1 is required for anteroposterior blastema polarity in planarian regeneration. Science 319:327–330
45. Pootrakul L, Datar RH, Shi SR et al (2006) Expression of stress response protein Grp78 is associated with the development of castration-resistant prostate cancer. Clin Cancer Res 12:5987–5993
46. Qian D, Jones C, Rzadzinska A et al (2007) Wnt5a functions in planar cell polarity regulation in mice. Dev Biol 306:121–133
47. Rao N, Jhamb D, Milner DJ et al (2009) Proteomic analysis of blastema formation in regenerating axolotl limbs. BMC Biol 7:83
48. Rink JC (2013) Stem cell systems and regeneration in planaria. Dev Genes Evol 223:67–84
49. Rink JC, Gurley KA, Elliott SA, Sánchez Alvarado A (2009) Planarian Hh signaling regulates regeneration polarity and links Hh pathway evolution to cilia. Science 326:1406–1410
50. Rink JC, Vu HT, Sánchez Alvarado A (2011) The maintenance and regeneration of the planarian excretory system are regulated by EGFR signaling. Development 138:3769–3780
51. Robb SMC, Ross E, Alvarado AS (2008) SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res 36:D599–D606
52. Rossi L, Salvetti A, Marincola FM et al (2007) Deciphering the molecular machinery of stem cells: a look at the neoblast gene expression profile. Genome Biol 8:R62
53. Rouhana L, Vieira AP, Roberts-Galbraith RH, Newmark PA (2012) PRMT5 and the role of symmetrical dimethylarginine in chromatoid bodies of planarian stem cells. Development 139:1083–1094
54. Sánchez Alvarado A (2003) The freshwater planarian Schmidtea mediterranea: embryogenesis, stem cells and regeneration. Curr Opin Genet Dev 13:438–444
55. Sandmann T, Vogg MC, Owlarn S, Boutros M, Bartscherer K (2011) The head-regeneration transcriptome of the planarian Schmidtea mediterranea. Genome Biol 12:R76
56. Schneider JW, Gao Z, Li S et al (2008) Small-molecule activation of neuronal cell fate. Nat Chem Biol 4:408–410
57. Shibata N, Rouhana L, Agata K (2010) Cellular and molecular dissection of pluripotent adult somatic stem cells in planarians. Develop Growth Differ 52:27–41
58. Singh S, Misiak M, Beyer C, Arnold S (2010) Brain region specificity of 3-nitropropionic acid-induced vulnerability of neurons involves cytochrome c oxidase. Neurochem Int 57:297–305
59. Solana J, Kao D, Mihaylova Y et al (2012) Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNAseq, RNA interference and irradiation approach. Genome Biol 13:R19
60. Veeman MT, Axelrod JD, Moon RT (2003) A second canon: functions and mechanisms of β-catenin-independent Wnt signaling. Dev Cell 5:367–377
61. Wallingford JB, Habas R (2005) The developmental biology of Dishevelled: an enigmatic protein governing cell fate and cell polarity. Development 132:4421–4436
62. Wenemoser D, Reddien PW (2010) Planarian regeneration involves distinct stem cell responses to wounds and tissue absence. Dev Biol 344:979–991
63. Wenemoser D, Lapan SW, Wilkinson AW, Bell GW, Reddien PW (2012) A molecular wound response program associated with regeneration initiation in planarians. Genes Dev 26:988–1002
64. Yuan ZQ, Zhao BS, Zhang JY (2012) Expression patterns of the STAG gene in intact and regenerating planarians (Dugesia japonica). Genet Mol Res 10:410–418
65. Zhang LH, Kamanna VS, Zhang MC, Kashyap ML (2008) Niacin inhibits surface expression of ATP synthase beta chain in HepG2 cells: implications for raising HDL. J Lipid Res 49:1195–1201
66. Zhang D, Chan JD, Nogi T, Marchant JS (2011) Opposing roles of voltage-gated Ca2+ channels in neuronal control of regenerative patterning. J Neurosci 31:15983–15995
67. Zhou L, Wu S, Liu D et al (2012) Characterization and expression analysis of a trypsin-like serine protease from planarian Dugesia japonica. Mol Biol Rep 39:7041–7047