-
1
-
-
80355122714
-
V(D)J recombination: Mechanisms of initiation
-
Schatz DG, Swanson PC (2011) V(D)J recombination: Mechanisms of initiation. Annu Rev Genet 45: 167-202.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 167-202
-
-
Schatz, D.G.1
Swanson, P.C.2
-
2
-
-
1942421722
-
RAG proteins shepherd double-strand breaks to a specific pathway, suppressing error-prone repair, but RAG nicking initiates homologous recombination
-
Lee GS, Neiditch MB, Salus SS, Roth DB (2004) RAG proteins shepherd double-strand breaks to a specific pathway, suppressing error-prone repair, but RAG nicking initiates homologous recombination. Cell 117(2): 171-184.
-
(2004)
Cell
, vol.117
, Issue.2
, pp. 171-184
-
-
Lee, G.S.1
Neiditch, M.B.2
Salus, S.S.3
Roth, D.B.4
-
3
-
-
0035997348
-
V(D)J recombination: RAG proteins, repair factors, and regulation
-
Gellert M (2002) V(D)J recombination: RAG proteins, repair factors, and regulation. Annu Rev Biochem 71: 101-132.
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 101-132
-
-
Gellert, M.1
-
4
-
-
64649092651
-
The roles of the RAG1 and RAG2 "non-core" regions in V(D)J recombination and lymphocyte development
-
Jones JM, Simkus C (2009) The roles of the RAG1 and RAG2 "non-core" regions in V(D)J recombination and lymphocyte development. Arch Immunol Ther Exp (Warsz) 57(2): 105-116.
-
(2009)
Arch Immunol Ther Exp (Warsz)
, vol.57
, Issue.2
, pp. 105-116
-
-
Jones, J.M.1
Simkus, C.2
-
5
-
-
3242892354
-
The bounty of RAGs: Recombination signal complexes and reaction outcomes
-
Swanson PC (2004) The bounty of RAGs: Recombination signal complexes and reaction outcomes. Immunol Rev 200: 90-114.
-
(2004)
Immunol Rev
, vol.200
, pp. 90-114
-
-
Swanson, P.C.1
-
6
-
-
0030994385
-
Stimulation of V(D)J cleavage by high mobility group proteins
-
van Gent DC, Hiom K, Paull TT, Gellert M (1997) Stimulation of V(D)J cleavage by high mobility group proteins. EMBO J 16(10): 2665-2670.
-
(1997)
EMBO J
, vol.16
, Issue.10
, pp. 2665-2670
-
-
Van Gent, D.C.1
Hiom, K.2
Paull, T.T.3
Gellert, M.4
-
7
-
-
0036839614
-
A RAG-1/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals
-
Swanson PC (2002) A RAG-1/RAG-2 tetramer supports 12/23-regulated synapsis, cleavage, and transposition of V(D)J recombination signals. Mol Cell Biol 22(22): 7790-7801.
-
(2002)
Mol Cell Biol
, vol.22
, Issue.22
, pp. 7790-7801
-
-
Swanson, P.C.1
-
8
-
-
24744446820
-
Both high mobility group (HMG)-boxes and the acidic tail of HMGB1 regulate recombination-activating gene (RAG)-mediated recombination signal synapsis and cleavage in vitro
-
Bergeron S, Madathiparambil T, Swanson PC (2005) Both high mobility group (HMG)-boxes and the acidic tail of HMGB1 regulate recombination-activating gene (RAG)-mediated recombination signal synapsis and cleavage in vitro. J Biol Chem 280(35): 31314-31324.
-
(2005)
J Biol Chem
, vol.280
, Issue.35
, pp. 31314-31324
-
-
Bergeron, S.1
Madathiparambil, T.2
Swanson, P.C.3
-
9
-
-
42449117574
-
HMG-box domain stimulation of RAG1/2 cleavage activity is metal ion dependent
-
Kriatchko AN, Bergeron S, Swanson PC (2008) HMG-box domain stimulation of RAG1/2 cleavage activity is metal ion dependent. BMC Mol Biol 9: 32.
-
(2008)
BMC Mol Biol
, vol.9
, pp. 32
-
-
Kriatchko, A.N.1
Bergeron, S.2
Swanson, P.C.3
-
10
-
-
64549115367
-
HMGB1/2 can target DNA for illegitimate cleavage by the RAG1/2 complex
-
Zhang M, Swanson PC (2009) HMGB1/2 can target DNA for illegitimate cleavage by the RAG1/2 complex. BMC Mol Biol 10: 24.
-
(2009)
BMC Mol Biol
, vol.10
, pp. 24
-
-
Zhang, M.1
Swanson, P.C.2
-
11
-
-
0028048275
-
The mechanism of V(D)J joining: Lessons from molecular, immunological, and comparative analyses
-
Lewis SM (1994) The mechanism of V(D)J joining: Lessons from molecular, immunological, and comparative analyses. Adv Immunol 56: 27-150.
-
(1994)
Adv Immunol
, vol.56
, pp. 27-150
-
-
Lewis, S.M.1
-
12
-
-
65549118829
-
Full-length RAG1 promotes contact with coding and intersignal sequences in RAG protein complexes bound to recombination signals paired in cis
-
Kumar S, Swanson PC (2009) Full-length RAG1 promotes contact with coding and intersignal sequences in RAG protein complexes bound to recombination signals paired in cis. Nucleic Acids Res 37(7): 2211-2226.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.7
, pp. 2211-2226
-
-
Kumar, S.1
Swanson, P.C.2
-
13
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3): 403-410.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
14
-
-
0028956979
-
Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules
-
Finzi L, Gelles J (1995) Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules. Science 267(5196): 378-380.
-
(1995)
Science
, vol.267
, Issue.5196
, pp. 378-380
-
-
Finzi, L.1
Gelles, J.2
-
15
-
-
84867644247
-
The effect of nonspecific binding of lambda repressor on DNA looping dynamics
-
Manzo C, Zurla C, Dunlap DD, Finzi L (2012) The effect of nonspecific binding of lambda repressor on DNA looping dynamics. Biophys J 103(8): 1753-1761.
-
(2012)
Biophys J
, vol.103
, Issue.8
, pp. 1753-1761
-
-
Manzo, C.1
Zurla, C.2
Dunlap, D.D.3
Finzi, L.4
-
16
-
-
33749359386
-
Viewing single lambda site-specific recombination events from start to finish
-
Mumm JP, Landy A, Gelles J (2006) Viewing single lambda site-specific recombination events from start to finish. EMBO J 25(19): 4586-4595.
-
(2006)
EMBO J
, vol.25
, Issue.19
, pp. 4586-4595
-
-
Mumm, J.P.1
Landy, A.2
Gelles, J.3
-
17
-
-
33750007449
-
IS911 transpososome assembly as analysed by tethered particle motion
-
Pouget N, Turlan C, Destainville N, Salomé L, Chandler M (2006) IS911 transpososome assembly as analysed by tethered particle motion. Nucleic Acids Res 34(16): 4313-4323.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.16
, pp. 4313-4323
-
-
Pouget, N.1
Turlan, C.2
Destainville, N.3
Salomé, L.4
Chandler, M.5
-
18
-
-
54849423896
-
Quantitative analyses of RAG-RSS interactions and conformations revealed by atomic force microscopy
-
Pavlicek JW, Lyubchenko YL, Chang Y (2008) Quantitative analyses of RAG-RSS interactions and conformations revealed by atomic force microscopy. Biochemistry 47(43): 11204-11211.
-
(2008)
Biochemistry
, vol.47
, Issue.43
, pp. 11204-11211
-
-
Pavlicek, J.W.1
Lyubchenko, Y.L.2
Chang, Y.3
-
19
-
-
66249118030
-
Concentration and length dependence of DNA looping in tran-scriptional regulation
-
Han L, et al. (2009) Concentration and length dependence of DNA looping in tran-scriptional regulation. PLoS ONE 4(5):e5621.
-
(2009)
PLoS ONE
, vol.4
, Issue.5
-
-
Han, L.1
-
20
-
-
84870573112
-
Sequence dependence of transcription factor-mediated DNA looping
-
Johnson S, Lindén M, Phillips R (2012) Sequence dependence of transcription factor-mediated DNA looping. Nucleic Acids Res 40(16): 7728-7738.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.16
, pp. 7728-7738
-
-
Johnson, S.1
Lindén, M.2
Phillips, R.3
-
21
-
-
84864482805
-
Real-time monitoring of RAG-catalyzed DNA cleavage unveils dynamic changes in coding end association with the coding end complex
-
Wang G, Dhar K, Swanson PC, Levitus M, Chang Y (2012) Real-time monitoring of RAG-catalyzed DNA cleavage unveils dynamic changes in coding end association with the coding end complex. Nucleic Acids Res 40(13): 6082-6096.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.13
, pp. 6082-6096
-
-
Wang, G.1
Dhar, K.2
Swanson, P.C.3
Levitus, M.4
Chang, Y.5
-
22
-
-
62049085849
-
A non-sequence-specific DNA binding mode of RAG1 is inhibited by RAG2
-
Zhao S, Gwyn LM, De P, Rodgers KK (2009) A non-sequence-specific DNA binding mode of RAG1 is inhibited by RAG2. J Mol Biol 387(3): 744-758.
-
(2009)
J Mol Biol
, vol.387
, Issue.3
, pp. 744-758
-
-
Zhao, S.1
Gwyn, L.M.2
De, P.3
Rodgers, K.K.4
-
23
-
-
35748980855
-
HMGB binding to DNA: Single and double box motifs
-
McCauley MJ, Zimmerman J, Maher LJ, 3rd, Williams MC (2007) HMGB binding to DNA: Single and double box motifs. J Mol Biol 374(4): 993-1004.
-
(2007)
J Mol Biol
, vol.374
, Issue.4
, pp. 993-1004
-
-
McCauley, M.J.1
Zimmerman, J.2
Maher, L.J.3
Williams, M.C.4
-
24
-
-
67651094349
-
Molecular mechanism underlying RAG1/RAG2 synaptic complex formation
-
Shlyakhtenko LS, et al. (2009) Molecular mechanism underlying RAG1/RAG2 synaptic complex formation. J Biol Chem 284(31): 20956-20965.
-
(2009)
J Biol Chem
, vol.284
, Issue.31
, pp. 20956-20965
-
-
Shlyakhtenko, L.S.1
-
25
-
-
84876380952
-
RAG and HMGB1 create a large bend in the 23RSS in the V(D)J recombination synaptic complexes
-
Ciubotaru M, et al. (2013) RAG and HMGB1 create a large bend in the 23RSS in the V(D)J recombination synaptic complexes. Nucleic Acids Res 41(4): 2437-2454.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.4
, pp. 2437-2454
-
-
Ciubotaru, M.1
-
26
-
-
84941145632
-
The architecture of the 12RSS in V(D)J recombination signal and synaptic complexes
-
Ciubotaru M, et al. (2015) The architecture of the 12RSS in V(D)J recombination signal and synaptic complexes. Nucleic Acids Res 43(2): 917-931.
-
(2015)
Nucleic Acids Res
, vol.43
, Issue.2
, pp. 917-931
-
-
Ciubotaru, M.1
-
27
-
-
84899655549
-
Modeling of the RAG reaction mechanism
-
Askary A, Shimazaki N, Bayat N, Lieber MR (2014) Modeling of the RAG reaction mechanism. Cell Reports 7(2): 307-315.
-
(2014)
Cell Reports
, vol.7
, Issue.2
, pp. 307-315
-
-
Askary, A.1
Shimazaki, N.2
Bayat, N.3
Lieber, M.R.4
-
28
-
-
0027410476
-
V(D)J recombination: Signal and coding joint resolution are uncoupled and depend on parallel synapsis of the sites
-
Sheehan KM, Lieber MR (1993) V(D)J recombination: Signal and coding joint resolution are uncoupled and depend on parallel synapsis of the sites. Mol Cell Biol 13(3): 1363-1370.
-
(1993)
Mol Cell Biol
, vol.13
, Issue.3
, pp. 1363-1370
-
-
Sheehan, K.M.1
Lieber, M.R.2
-
29
-
-
0029864993
-
Initiation of V(D)J recombination in vitro obeying the 12/23 rule
-
Eastman QM, Leu TM, Schatz DG (1996) Initiation of V(D)J recombination in vitro obeying the 12/23 rule. Nature 380(6569): 85-88.
-
(1996)
Nature
, vol.380
, Issue.6569
, pp. 85-88
-
-
Eastman, Q.M.1
Leu, T.M.2
Schatz, D.G.3
-
30
-
-
0030009253
-
The RAG1 and RAG2 proteins establish the 12/23 rule in V(D)J recombination
-
van Gent DC, Ramsden DA, Gellert M (1996) The RAG1 and RAG2 proteins establish the 12/23 rule in V(D)J recombination. Cell 85(1): 107-113.
-
(1996)
Cell
, vol.85
, Issue.1
, pp. 107-113
-
-
Van Gent, D.C.1
Ramsden, D.A.2
Gellert, M.3
-
31
-
-
0036682598
-
Ordered assembly of the V(D)J synaptic complex ensures accurate recombination
-
Jones JM, Gellert M (2002) Ordered assembly of the V(D)J synaptic complex ensures accurate recombination. EMBO J 21(15): 4162-4171.
-
(2002)
EMBO J
, vol.21
, Issue.15
, pp. 4162-4171
-
-
Jones, J.M.1
Gellert, M.2
-
32
-
-
84870565733
-
HMGB1-facilitated p53 DNA binding occurs via HMG-Box/p53 transactivation domain interaction, regulated by the acidic tail
-
Rowell JP, Simpson KL, Stott K, Watson M, Thomas JO (2012) HMGB1-facilitated p53 DNA binding occurs via HMG-Box/p53 transactivation domain interaction, regulated by the acidic tail. Structure 20(12): 2014-2024.
-
(2012)
Structure
, vol.20
, Issue.12
, pp. 2014-2024
-
-
Rowell, J.P.1
Simpson, K.L.2
Stott, K.3
Watson, M.4
Thomas, J.O.5
-
33
-
-
0037243276
-
Dramatically increased rearrangement and peripheral representation of Vbeta14 driven by the 3'Dbeta1 recombination signal sequence
-
Wu C, et al. (2003) Dramatically increased rearrangement and peripheral representation of Vbeta14 driven by the 3'Dbeta1 recombination signal sequence. Immunity 18(1): 75-85.
-
(2003)
Immunity
, vol.18
, Issue.1
, pp. 75-85
-
-
Wu, C.1
-
34
-
-
55249126682
-
Vbeta cluster sequences reduce the frequency of primary Vbeta2 and Vbeta14 rearrangements
-
Bassing CH, et al. (2008) Vbeta cluster sequences reduce the frequency of primary Vbeta2 and Vbeta14 rearrangements. Eur J Immunol 38(9): 2564-2572.
-
(2008)
Eur J Immunol
, vol.38
, Issue.9
, pp. 2564-2572
-
-
Bassing, C.H.1
-
35
-
-
42149120176
-
Productive coupling of accessible Vbeta14 segments and DJbeta complexes determines the frequency of Vbeta14 rearrangement
-
Ranganath S, et al. (2008) Productive coupling of accessible Vbeta14 segments and DJbeta complexes determines the frequency of Vbeta14 rearrangement. J Immunol 180(4): 2339-2346.
-
(2008)
J Immunol
, vol.180
, Issue.4
, pp. 2339-2346
-
-
Ranganath, S.1
|