-
1
-
-
84929307635
-
Simplicity
-
Stanford University, Stanford, Calif, USA
-
A. Baker, "Simplicity", in Stanford Encyclopedia of Philosophy, Stanford University, Stanford, Calif, USA, 2010.
-
(2010)
Stanford Encyclopedia of Philosophy
-
-
Baker, A.1
-
2
-
-
0028763687
-
Verification, validation, and confirmation of numerical models in the earth sciences
-
N. Oreskes, K. Shrader-Frechette, and K. Belitz, "Verification, validation, and confirmation of numerical models in the earth sciences", Science, vol. 263, no. 5147, pp. 641-646, 1994.
-
(1994)
Science
, vol.263
, Issue.5147
, pp. 641-646
-
-
Oreskes, N.1
Shrader-Frechette, K.2
Belitz, K.3
-
3
-
-
0039965042
-
Let's razor Occam's razor
-
D. Knowles, Ed., Cambridge University Press
-
E. Sober, "Let's razor Occam's razor", in Explanation and Its Limits, D. Knowles, Ed., pp. 73-93, Cambridge University Press, 1991.
-
(1991)
Explanation and its Limits
, pp. 73-93
-
-
Sober, E.1
-
4
-
-
0036500993
-
Systems biology: A brief overview
-
H. Kitano, "Systems biology: a brief overview", Science, vol. 295, no. 5560, pp. 1662-1664, 2002.
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1662-1664
-
-
Kitano, H.1
-
5
-
-
0036580169
-
Protein interactions: Two methods for assessment of the reliability of high throughput observations
-
C. M. Deane, Ł. Salwiński, I. Xenarios, and D. Eisenberg, "Protein interactions: two methods for assessment of the reliability of high throughput observations", Molecular & Cellular Proteomics, vol. 1, no. 5, pp. 349-356, 2002.
-
(2002)
Molecular & Cellular Proteomics
, vol.1
, Issue.5
, pp. 349-356
-
-
Deane, C.M.1
Salwiński Ł.2
Xenarios, I.3
Eisenberg, D.4
-
6
-
-
43049085575
-
Multi-scale computational modelling in biology and physiology
-
J. Southern, J. Pitt-Francis, J. Whiteley et al., "Multi-scale computational modelling in biology and physiology", Progress in Biophysics and Molecular Biology, vol. 96, no. 1-3, pp. 60-89, 2008.
-
(2008)
Progress in Biophysics and Molecular Biology
, vol.96
, Issue.1-3
, pp. 60-89
-
-
Southern, J.1
Pitt-Francis, J.2
Whiteley, J.3
-
7
-
-
33749506763
-
From in vivo to in silico biology and back
-
B. diVentura, C. Lemerle, K. Michalodimitrakis, and L. Serrano, "From in vivo to in silico biology and back", Nature, vol. 443, no. 7111, pp. 527-533, 2006.
-
(2006)
Nature
, vol.443
, Issue.7111
, pp. 527-533
-
-
DiVentura, B.1
Lemerle, C.2
Michalodimitrakis, K.3
Serrano, L.4
-
8
-
-
44349185622
-
Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-basedmodel of hypersensitivity reactions
-
D. Santoni, M. Pedicini, and F. Castiglione, "Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-basedmodel of hypersensitivity reactions", Bioinformatics, vol. 24, no. 11, pp. 1374-1380, 2008.
-
(2008)
Bioinformatics
, vol.24
, Issue.11
, pp. 1374-1380
-
-
Santoni, D.1
Pedicini, M.2
Castiglione, F.3
-
9
-
-
23744484039
-
Multiscale modeling of cardiac cellular energetics
-
J. B. Bassingthwaighte, H. J. Chizeck, L. E. Atlas, and H. Qian, "Multiscale modeling of cardiac cellular energetics", Annals of the New York Academy of Sciences, vol. 1047, pp. 395-424, 2005.
-
(2005)
Annals of the New York Academy of Sciences
, vol.1047
, pp. 395-424
-
-
Bassingthwaighte, J.B.1
Chizeck, H.J.2
Atlas, L.E.3
Qian, H.4
-
10
-
-
33044506498
-
Modelling biological complexity: A physical scientist's perspective
-
P. V. Coveney and P. W. Fowler, "Modelling biological complexity: a physical scientist's perspective", Journal of the Royal Society Interface, vol. 2, no. 4, pp. 267-280, 2005.
-
(2005)
Journal of the Royal Society Interface
, vol.2
, Issue.4
, pp. 267-280
-
-
Coveney, P.V.1
Fowler, P.W.2
-
11
-
-
79951480475
-
Multi-scale modelling and simulation in systems biology
-
J. O. Dada and P. Mendes, "Multi-scale modelling and simulation in systems biology", Integrative Biology, vol. 3, no. 2, pp. 86-96, 2011.
-
(2011)
Integrative Biology
, vol.3
, Issue.2
, pp. 86-96
-
-
Dada, J.O.1
Mendes, P.2
-
12
-
-
64849105954
-
Multiscale modeling of form and function
-
A. J. Engler, P. O. Humbert, B. Wehrle-Haller, and V. M. Weaver, "Multiscale modeling of form and function", Science, vol. 324, no. 5924, pp. 208-212, 2009.
-
(2009)
Science
, vol.324
, Issue.5924
, pp. 208-212
-
-
Engler, A.J.1
Humbert, P.O.2
Wehrle-Haller, B.3
Weaver, V.M.4
-
13
-
-
36048931366
-
Multiscale modeling of biological pattern formation
-
R. Grima, "Multiscale modeling of biological pattern formation", Current Topics in Developmental Biology, vol. 81, pp. 435-460, 2008.
-
(2008)
Current Topics in Developmental Biology
, vol.81
, pp. 435-460
-
-
Grima, R.1
-
14
-
-
80053608521
-
Multi-scale modeling in biology: How to bridge the gaps between scales?
-
Z. Qu, A. Garfinkel, J. N. Weiss, and M. Nivala, "Multi-scale modeling in biology: how to bridge the gaps between scales?" Progress in Biophysics and Molecular Biology, vol. 107, no. 1, pp. 21-31, 2011.
-
(2011)
Progress in Biophysics and Molecular Biology
, vol.107
, Issue.1
, pp. 21-31
-
-
Qu, Z.1
Garfinkel, A.2
Weiss, J.N.3
Nivala, M.4
-
15
-
-
77950990922
-
From molecules to organisms: Towards multiscale integrated models of biological systems
-
C. Lavelle, H. Berry, G. Beslon et al., "From molecules to organisms: towards multiscale integrated models of biological systems", Theoretical Biology Insights, vol. 1, pp. 13-22, 2008.
-
(2008)
Theoretical Biology Insights
, vol.1
, pp. 13-22
-
-
Lavelle, C.1
Berry, H.2
Beslon, G.3
-
16
-
-
77950361733
-
Multi-scale modelling in computational biomedicine
-
P. M. A. Sloot and A. G. Hoekstra, "Multi-scale modelling in computational biomedicine", Briefings in Bioinformatics, vol. 11, no. 1, Article ID bbp038, pp. 142-152, 2010.
-
(2010)
Briefings in Bioinformatics
, vol.11
, Issue.1
, pp. 142-152
-
-
Sloot, P.M.A.1
Hoekstra, A.G.2
-
17
-
-
80053164085
-
OpenCMISS: A multiphysics & multi-scale computational infrastructure for the VPH/Physiome project
-
C. Bradley, A. Bowery, R. Britten et al., "OpenCMISS: a multiphysics & multi-scale computational infrastructure for the VPH/Physiome project", Progress in Biophysics and Molecular Biology, vol. 107, no. 1, pp. 32-47, 2011.
-
(2011)
Progress in Biophysics and Molecular Biology
, vol.107
, Issue.1
, pp. 32-47
-
-
Bradley, C.1
Bowery, A.2
Britten, R.3
-
18
-
-
26844519686
-
A strategy for integrative computational physiology
-
P. Hunter and P. Nielsen, "A strategy for integrative computational physiology", Physiology, vol. 20, no. 5, pp. 316-325, 2005.
-
(2005)
Physiology
, vol.20
, Issue.5
, pp. 316-325
-
-
Hunter, P.1
Nielsen, P.2
-
19
-
-
80053608730
-
Multiscale simulation of microbe structure and dynamics
-
H. Joshi, A. B. Singharoy, Y. V. Sereda, S. C. Cheluvaraja, and P. J. Ortoleva, "Multiscale simulation of microbe structure and dynamics", Progress in Biophysics and Molecular Biology, vol. 107, no. 1, pp. 200-217, 2011.
-
(2011)
Progress in Biophysics and Molecular Biology
, vol.107
, Issue.1
, pp. 200-217
-
-
Joshi, H.1
Singharoy, A.B.2
Sereda, Y.V.3
Cheluvaraja, S.C.4
Ortoleva, P.J.5
-
20
-
-
77956393134
-
Multiscalemodeling for biologists
-
M. Meier-Schellersheim, I. D. Fraser, and F. Klauschen, "Multiscalemodeling for biologists", Wiley Interdisciplinary Reviews: Systems Biology and Medicine, vol. 1, no. 1, pp. 4-14, 2009.
-
(2009)
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
, vol.1
, Issue.1
, pp. 4-14
-
-
Meier-Schellersheim, M.1
Fraser, I.D.2
Klauschen, F.3
-
21
-
-
62349124337
-
Multiscale modeling of emergent materials: Biological and softmatter
-
T. Murtola, A. Bunker, I. Vattulainen, M. Deserno, and M. Karttunen, "Multiscale modeling of emergent materials: biological and softmatter", Physical Chemistry Chemical Physics, vol. 11, no. 12, pp. 1869-1892, 2009.
-
(2009)
Physical Chemistry Chemical Physics
, vol.11
, Issue.12
, pp. 1869-1892
-
-
Murtola, T.1
Bunker, A.2
Vattulainen, I.3
Deserno, M.4
Karttunen, M.5
-
22
-
-
33847626655
-
Multiscale modeling in biology
-
S. Schnell, R. Grima, and P. K. Maini, "Multiscale modeling in biology", The American Scientist, vol. 95, no. 2, pp. 134-142, 2007.
-
(2007)
The American Scientist
, vol.95
, Issue.2
, pp. 134-142
-
-
Schnell, S.1
Grima, R.2
Maini, P.K.3
-
23
-
-
0037336350
-
Integration from proteins to organs: The physiome project
-
P. J. Hunter and T. K. Borg, "Integration from proteins to organs: the physiome project", Nature Reviews Molecular Cell Biology, vol. 4, no. 3, pp. 237-243, 2003.
-
(2003)
Nature Reviews Molecular Cell Biology
, vol.4
, Issue.3
, pp. 237-243
-
-
Hunter, P.J.1
Borg, T.K.2
-
24
-
-
32044452595
-
-
Springer, Heidelberg, Germany
-
L. Alberghina and H. V. Westerhoof, Eds., Systems Biology-Definitions and Perspectives, Springer, Heidelberg, Germany, 2008.
-
(2008)
Systems Biology-definitions and Perspectives
-
-
Alberghina, L.1
Westerhoof, H.V.2
-
25
-
-
84856531076
-
Immune systems modelling by topdown and bottom-up approaches
-
C. Bianca and M. Pennisi, "Immune systems modelling by topdown and bottom-up approaches", International Mathematical Forum, vol. 7, no. 1-4, pp. 109-128, 2012.
-
(2012)
International Mathematical Forum
, vol.7
, Issue.1-4
, pp. 109-128
-
-
Bianca, C.1
Pennisi, M.2
-
26
-
-
85008066128
-
The VPH-Physiome project: Standards and tools for multiscale modeling in clinical applications
-
P. J. Hunter and M. Viceconti, "The VPH-Physiome project: Standards and tools for multiscale modeling in clinical applications", IEEE Reviews in Biomedical Engineering, vol. 2, pp. 40-53, 2009.
-
(2009)
IEEE Reviews in Biomedical Engineering
, vol.2
, pp. 40-53
-
-
Hunter, P.J.1
Viceconti, M.2
-
27
-
-
84889040707
-
Mathematical modeling of biological systems
-
S. Motta and F. Pappalardo, "Mathematical modeling of biological systems", Briefings in Bioinformatics, vol. 14, no. 4, pp. 411-422, 2013.
-
(2013)
Briefings in Bioinformatics
, vol.14
, Issue.4
, pp. 411-422
-
-
Motta, S.1
Pappalardo, F.2
-
28
-
-
0142129344
-
What everyone should know about the Belousov-Zhabotinsky reaction
-
S. A. Levin, Ed., Springer, New York, NY, USA
-
J. T. Tyson, "What everyone should know about the Belousov-Zhabotinsky reaction", in Frontiers in Mathematical Biology, S. A. Levin, Ed., pp. 569-587, Springer, New York, NY, USA, 1994.
-
(1994)
Frontiers in Mathematical Biology
, pp. 569-587
-
-
Tyson, J.T.1
-
29
-
-
0003475470
-
-
Springer, New York, NY, USA
-
J. D. Murray, Mathematical Biology Vol I and Vol II, Springer, New York, NY, USA, 2003.
-
(2003)
Mathematical Biology
, vol.1-2
-
-
Murray, J.D.1
-
30
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
D. T. Gillepsie, "A general method for numerically simulating the stochastic time evolution of coupled chemical reactions", Journal of Computational Physics, vol. 22, no. 4, pp. 403-434, 1976.
-
(1976)
Journal of Computational Physics
, vol.22
, Issue.4
, pp. 403-434
-
-
Gillepsie, D.T.1
-
31
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
D. T. Gillespie, "Exact stochastic simulation of coupled chemical reactions", Journal of Physical Chemistry, vol. 81, no. 25, pp. 2340-2361, 1977.
-
(1977)
Journal of Physical Chemistry
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
32
-
-
0001177693
-
Monte Carlo approach to tissue-cell populations
-
D. Drasdo, R. Kree, and J. S. McCaskill, "Monte Carlo approach to tissue-cell populations", Physical Review E, vol. 52, no. 6, pp. 6635-6657, 1995.
-
(1995)
Physical Review E
, vol.52
, Issue.6
, pp. 6635-6657
-
-
Drasdo, D.1
Kree, R.2
McCaskill, J.S.3
-
33
-
-
0034180349
-
Buckling instabilities of one-layered growing tissues
-
D. Drasdo, "Buckling instabilities of one-layered growing tissues", Physical Review Letters, vol. 84, no. 18, pp. 4244-4247, 2000.
-
(2000)
Physical Review Letters
, vol.84
, Issue.18
, pp. 4244-4247
-
-
Drasdo, D.1
-
34
-
-
77953771023
-
Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration
-
S. Hoehme, M. Brulport, A. Bauer et al., "Prediction and validation of cell alignment along microvessels as order principle to restore tissue architecture in liver regeneration", Proceedings of the National Academy of Sciences of the United States of America, vol. 107, no. 23, pp. 10371-10376, 2010.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, Issue.23
, pp. 10371-10376
-
-
Hoehme, S.1
Brulport, M.2
Bauer, A.3
-
35
-
-
0031126595
-
A mathematical model of circulation in the presence of the bidirectional cavopulmonary anastomosis in children with a univentricular heart
-
G. Pennati, F. Migliavacca, G. Dubini, R. Pietrabissa, and M. R. De Leval, "A mathematical model of circulation in the presence of the bidirectional cavopulmonary anastomosis in children with a univentricular heart", Medical Engineering and Physics, vol. 19, no. 3, pp. 223-234, 1997.
-
(1997)
Medical Engineering and Physics
, vol.19
, Issue.3
, pp. 223-234
-
-
Pennati, G.1
Migliavacca, F.2
Dubini, G.3
Pietrabissa, R.4
De Leval, M.R.5
-
36
-
-
0031171654
-
Mathematical modelling of the human foetal cardiovascular system based on Doppler ultrasound data
-
G. Pennati, M. Bellotti, and R. Fumero, "Mathematical modelling of the human foetal cardiovascular system based on Doppler ultrasound data", Medical Engineering and Physics, vol. 19, no. 4, pp. 327-335, 1997.
-
(1997)
Medical Engineering and Physics
, vol.19
, Issue.4
, pp. 327-335
-
-
Pennati, G.1
Bellotti, M.2
Fumero, R.3
-
37
-
-
0036375364
-
Multiscale modelling as a tool to prescribe realistic boundary conditions for the study of surgical procedures
-
K. Laganà, G. Dubini, F. Migliavacca et al., "Multiscale modelling as a tool to prescribe realistic boundary conditions for the study of surgical procedures", Biorheology, vol. 39, no. 3-4, pp. 359-364, 2002.
-
(2002)
Biorheology
, vol.39
, Issue.3-4
, pp. 359-364
-
-
Laganà, K.1
Dubini, G.2
Migliavacca, F.3
-
38
-
-
79954461933
-
Reactive animation: From piecemeal experimentation to reactive biological systems
-
O. Vainas, D. Harel, I. R. Cohen, and S. Efron, "Reactive animation: from piecemeal experimentation to reactive biological systems", Autoimmunity, vol. 44, no. 4, pp. 271-281, 2011.
-
(2011)
Autoimmunity
, vol.44
, Issue.4
, pp. 271-281
-
-
Vainas, O.1
Harel, D.2
Cohen, I.R.3
Efron, S.4
-
39
-
-
84864267635
-
Statetransition diagrams for biologists
-
H. Bersini, D. Klatzmann, A. Six, and V. Thomas-Vaslin, "Statetransition diagrams for biologists", PLoS ONE, vol. 7, no. 7, Article ID e41165, 2012.
-
(2012)
PLoS ONE
, vol.7
, Issue.7
-
-
Bersini, H.1
Klatzmann, D.2
Six, A.3
Thomas-Vaslin, V.4
-
40
-
-
79960354514
-
Refitting harel statecharts for systemic mathematicalmodels in computational immunology
-
Springer, Berlin, Germany
-
C. H. McEwan, H. Bersini, D. Klatzmann, V. Thomas-Vaslin, and A. Six, "Refitting harel statecharts for systemic mathematicalmodels in computational immunology", in Artificial Immune Systems, vol. 6825 of Lecture Notes in Computer Science, pp. 44-50, Springer, Berlin, Germany, 2011.
-
(2011)
Artificial Immune Systems, Vol. 6825 of Lecture Notes in Computer Science
, pp. 44-50
-
-
McEwan, C.H.1
Bersini, H.2
Klatzmann, D.3
Thomas-Vaslin, V.4
Six, A.5
-
41
-
-
0030739712
-
A general computational framework for modeling cellular structure and function
-
J. Schaff, C. C. Fink, B. Slepchenko, J. H. Carson, and L. M. Loew, "A general computational framework for modeling cellular structure and function", Biophysical Journal, vol. 73, no. 3, pp. 1135-1146, 1997.
-
(1997)
Biophysical Journal
, vol.73
, Issue.3
, pp. 1135-1146
-
-
Schaff, J.1
Fink, C.C.2
Slepchenko, B.3
Carson, J.H.4
Loew, L.M.5
-
42
-
-
0033515250
-
Buildingworking cells "in silico"
-
D. Normile, "Buildingworking cells "in silico"", Science, vol. 284, no. 5411, pp. 80-81, 1999.
-
(1999)
Science
, vol.284
, Issue.5411
, pp. 80-81
-
-
Normile, D.1
-
43
-
-
1542400036
-
A multialgorithm, multi-timescale method for cell simulation
-
K. Takahashi, K. Kaizu, B. Hu, and M. Tomita, "A multialgorithm, multi-timescale method for cell simulation", Bioinformatics, vol. 20, no. 4, pp. 538-546, 2004.
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 538-546
-
-
Takahashi, K.1
Kaizu, K.2
Hu, B.3
Tomita, M.4
-
44
-
-
84859840179
-
Thevirtual liver: A multidisciplinary, multilevel challenge for systems biology
-
H-G. Holzhütter, D. Drasdo, T. Preusser et al., "Thevirtual liver: a multidisciplinary, multilevel challenge for systems biology", Wiley Interdisciplinary Reviews. Systems Biology and Medicine, vol. 4, no. 3, pp. 221-235, 2012.
-
(2012)
Wiley Interdisciplinary Reviews. Systems Biology and Medicine
, vol.4
, Issue.3
, pp. 221-235
-
-
Holzhütter, H.-G.1
Drasdo, D.2
Preusser, T.3
-
45
-
-
84926086934
-
-
Cambridge University Press, New York, NY, USA
-
M. Viceconti, Multiscale Modeling of the Skeletal System, Cambridge University Press, New York, NY, USA, 2012.
-
(2012)
Multiscale Modeling of the Skeletal System
-
-
Viceconti, M.1
-
46
-
-
80054718671
-
A computational systems biology software platform for multiscale modeling and simulation: Integrating whole-body physiology, disease biology, and molecular reaction networks
-
T. Eissing, L. Kuepfer, C. Becker et al., "A computational systems biology software platform for multiscale modeling and simulation: integrating whole-body physiology, disease biology, and molecular reaction networks", Frontiers in Physiology, vol. 2, article 4, 2011.
-
(2011)
Frontiers in Physiology
, vol.2
-
-
Eissing, T.1
Kuepfer, L.2
Becker, C.3
-
47
-
-
0031603269
-
Biological computation
-
G. Bock and J. Goode, Eds., vol. 213 of Novartis Foundation Symposium, John Wiley & Sons, London, UK
-
S. Brenner, "Biological computation", in The Limits of Reductionism in Biology, G. Bock and J. Goode, Eds., vol. 213 of Novartis Foundation Symposium, pp. 106-116, John Wiley & Sons, London, UK, 1998.
-
(1998)
The Limits of Reductionism in Biology
, pp. 106-116
-
-
Brenner, S.1
-
48
-
-
0036499997
-
Modeling the heart-fromgenes to cells to the whole organ
-
D. Noble, "Modeling the heart-fromgenes to cells to the whole organ", Science, vol. 295, no. 5560, pp. 1678-1682, 2002.
-
(2002)
Science
, vol.295
, Issue.5560
, pp. 1678-1682
-
-
Noble, D.1
-
50
-
-
73449130181
-
Nutritional systems biology modeling: From molecular mechanisms to physiology
-
A. A. de Graaf, A. P. Freidig, B. de Roos et al., "Nutritional systems biology modeling: from molecular mechanisms to physiology", PLoS Computational Biology, vol. 5, no. 11, Article ID e1000554, 2009.
-
(2009)
PLoS Computational Biology
, vol.5
, Issue.11
-
-
De Graaf, A.A.1
Freidig, A.P.2
De Roos, B.3
-
51
-
-
84870239432
-
Thermostatted models-multiscale analysis and tuning with real-world systems data
-
C. Bianca, "Thermostatted models-multiscale analysis and tuning with real-world systems data", Physics of Life Reviews, vol. 9, no. 4, pp. 418-425, 2012.
-
(2012)
Physics of Life Reviews
, vol.9
, Issue.4
, pp. 418-425
-
-
Bianca, C.1
-
52
-
-
84929336948
-
Multiscalemodeling: Linkingmolecular, cellular, and tissues scales
-
C. Bianca and N. Bellomo, "Multiscalemodeling: linkingmolecular, cellular, and tissues scales", in Towards a Mathematical Theory of Complex Biological Systems, vol. 11, pp. 89-115, 2011.
-
(2011)
Towards a Mathematical Theory of Complex Biological Systems
, vol.11
, pp. 89-115
-
-
Bianca, C.1
Bellomo, N.2
-
53
-
-
77954176604
-
Modelling aggregation-fragmentation phenomena from kinetic to macroscopic scales
-
A. Bellouquid and C. Bianca, "Modelling aggregation-fragmentation phenomena from kinetic to macroscopic scales", Mathematical and ComputerModelling, vol. 52, no. 5-6, pp. 802-813, 2010.
-
(2010)
Mathematical and ComputerModelling
, vol.52
, Issue.5-6
, pp. 802-813
-
-
Bellouquid, A.1
Bianca, C.2
-
54
-
-
84870253633
-
Thermostatted kinetic equations as models for complex systems in physics and life sciences
-
C. Bianca, "Thermostatted kinetic equations as models for complex systems in physics and life sciences", Physics of Life Reviews, vol. 9, no. 4, pp. 359-399, 2012.
-
(2012)
Physics of Life Reviews
, vol.9
, Issue.4
, pp. 359-399
-
-
Bianca, C.1
-
55
-
-
78149362061
-
A robust model to describe the differentiation of T-helper cells
-
L. Mendoza and F. Pardo, "A robust model to describe the differentiation of T-helper cells", Theory in Biosciences, vol. 129, no. 4, pp. 283-293, 2010.
-
(2010)
Theory in Biosciences
, vol.129
, Issue.4
, pp. 283-293
-
-
Mendoza, L.1
Pardo, F.2
-
56
-
-
84879559826
-
The regulatory network that controls the differentiation of T lymphocytes
-
P. Martínez-Sosa and L. Mendoza, "The regulatory network that controls the differentiation of T lymphocytes", BioSystems, vol. 113, no. 2, pp. 96-103, 2013.
-
(2013)
BioSystems
, vol.113
, Issue.2
, pp. 96-103
-
-
Martínez-Sosa, P.1
Mendoza, L.2
-
57
-
-
78651299880
-
Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation
-
M. Pedicini, F. Barrenäs, T. Clancy et al., "Combining network modeling and gene expression microarray analysis to explore the dynamics of Th1 and Th2 cell regulation", PLoS Computational Biology, vol. 6, no. 12, Article IDe1001032, 8 pages, 2010.
-
(2010)
PLoS Computational Biology
, vol.6
, Issue.12
, pp. 8
-
-
Pedicini, M.1
Barrenäs, F.2
Clancy, T.3
-
58
-
-
78049424847
-
Diversity and plasticity of Thcell types predicted fromregulatory network modelling
-
A. Naldi, J. Carneiro, C. Chaouiya, and D. Thieffry, "Diversity and plasticity of Thcell types predicted fromregulatory network modelling", PLoS Computational Biology, vol. 6, no. 9, Article ID e1000912, 2010.
-
(2010)
PLoS Computational Biology
, vol.6
, Issue.9
-
-
Naldi, A.1
Carneiro, J.2
Chaouiya, C.3
Thieffry, D.4
-
59
-
-
85099683746
-
The onset of type 2 diabetes: Proposal for a multi-scale model
-
F. Castiglione, P. Tieri, A. de Graaf et al., "The onset of type 2 diabetes: proposal for a multi-scale model", JMIR Research Protocols, vol. 2, no. 2, p. e44, 2013.
-
(2013)
JMIR Research Protocols
, vol.2
, Issue.2
, pp. e44
-
-
Castiglione, F.1
Tieri, P.2
De Graaf, A.3
-
61
-
-
53449101249
-
Cell transmembrane receptors determine tissue pattern stability
-
T. Beyer and M. Meyer-Hermann, "Cell transmembrane receptors determine tissue pattern stability", Physical Review Letters, vol. 101, no. 14, Article ID 148102, 2008.
-
(2008)
Physical Review Letters
, vol.101
, Issue.14
-
-
Beyer, T.1
Meyer-Hermann, M.2
-
62
-
-
79551565619
-
A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt
-
P. Buske, J. Galle, N. Barker, G. Aust, H. Clevers, and M. Loeffler, "A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt", PLoS Computational Biology, vol. 7, no. 1, Article ID e1001045, 2011.
-
(2011)
PLoS Computational Biology
, vol.7
, Issue.1
-
-
Buske, P.1
Galle, J.2
Barker, N.3
Aust, G.4
Clevers, H.5
Loeffler, M.6
-
63
-
-
79955030886
-
Multiscale modelling of vascular tumour growth in 3D: The roles of domain size and boundary conditions
-
H. Perfahl, H. M. Byrne, T. Chen et al., "Multiscale modelling of vascular tumour growth in 3D: The roles of domain size and boundary conditions", PLoS ONE, vol. 6, no. 4, Article ID e14790, 2011.
-
(2011)
PLoS ONE
, vol.6
, Issue.4
-
-
Perfahl, H.1
Byrne, H.M.2
Chen, T.3
-
64
-
-
84902649698
-
The multi-scale immune response to pathogens: M. Tuberculosis as an example
-
D. Flower and J. Timmis, Eds., Springer, Berlin, Germany
-
D. Kirschner, "The multi-scale immune response to pathogens: M. tuberculosis as an example", in In Silico Immunology, D. Flower and J. Timmis, Eds., pp. 289-311, Springer, Berlin, Germany, 2007.
-
(2007)
Silico Immunology
, pp. 289-311
-
-
Kirschner, D.1
-
65
-
-
33947236071
-
Toward amultiscalemodel of antigen presentation in immunity
-
D. E. Kirschner, S. T. Chang, T. W. Riggs, N. Perry, and J. J. Linderman, "Toward amultiscalemodel of antigen presentation in immunity", Immunological Reviews, vol. 216, no. 1, pp. 93-118, 2007.
-
(2007)
Immunological Reviews
, vol.216
, Issue.1
, pp. 93-118
-
-
Kirschner, D.E.1
Chang, S.T.2
Riggs, T.W.3
Perry, N.4
Linderman, J.J.5
-
66
-
-
33746516694
-
A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields
-
D. C. Wylie, Y. Hori, A. R. Dinner, and A. K. Chakraborty, "A hybrid deterministic-stochastic algorithm for modeling cell signaling dynamics in spatially inhomogeneous environments and under the influence of external fields", Journal of Physical Chemistry B, vol. 110, no. 25, pp. 12749-12765, 2006.
-
(2006)
Journal of Physical Chemistry B
, vol.110
, Issue.25
, pp. 12749-12765
-
-
Wylie, D.C.1
Hori, Y.2
Dinner, A.R.3
Chakraborty, A.K.4
-
67
-
-
48349089965
-
CellML and associated tools and techniques
-
A. Garny, D. P. Nickerson, J. Cooper et al., "CellML and associated tools and techniques", Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 366, no. 1878, pp. 3017-3043, 2008.
-
(2008)
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
, vol.366
, Issue.1878
, pp. 3017-3043
-
-
Garny, A.1
Nickerson, D.P.2
Cooper, J.3
-
68
-
-
67149114967
-
FieldML: Concepts and implementation
-
G. R. Christie, P. M. F. Nielsen, S. A. Blackett, C. P. Bradley, and P. J. Hunter, "FieldML: concepts and implementation", Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 367, no. 1895, pp. 1869-1884, 2009.
-
(2009)
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
, vol.367
, Issue.1895
, pp. 1869-1884
-
-
Christie, G.R.1
Nielsen, P.M.F.2
Blackett, S.A.3
Bradley, C.P.4
Hunter, P.J.5
-
69
-
-
0037342537
-
The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
-
M. Hucka, A. Finney, H. M. Sauro et al., "The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models", Bioinformatics, vol. 19, no. 4, pp. 524-531, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 524-531
-
-
Hucka, M.1
Finney, A.2
Sauro, H.M.3
-
70
-
-
78650283886
-
MML: Towards a multiscale modeling language
-
J.-L. Falcone, B. Chopard, and A. Hoekstra, "MML: towards a multiscale modeling language", Procedia Computer Science, vol. 1, no. 1, pp. 819-826, 2010.
-
(2010)
Procedia Computer Science
, vol.1
, Issue.1
, pp. 819-826
-
-
Falcone, J.-L.1
Chopard, B.2
Hoekstra, A.3
-
71
-
-
0347511691
-
Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration
-
H. M. Sauro, M. Hucka, A. Finney et al., "Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration", OMICS A Journal of Integrative Biology, vol. 7, no. 4, pp. 355-372, 2003.
-
(2003)
OMICS a Journal of Integrative Biology
, vol.7
, Issue.4
, pp. 355-372
-
-
Sauro, H.M.1
Hucka, M.2
Finney, A.3
-
73
-
-
49549114073
-
The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery
-
D. J. W. Evans, P. V. Lawford, J. Gunn et al., "The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery", Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 366, no. 1879, pp. 3343-3360, 2008.
-
(2008)
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
, vol.366
, Issue.1879
, pp. 3343-3360
-
-
Evans, D.J.W.1
Lawford, P.V.2
Gunn, J.3
-
74
-
-
79953069544
-
A complex automata approach for in-stent restenosis: Two-dimensional multiscale modelling and simulations
-
A. Caiazzo, D. Evans, J. Falcone et al., "A complex automata approach for in-stent restenosis: two-dimensional multiscale modelling and simulations", Journal of Computational Science, vol. 2, no. 1, pp. 9-17, 2011.
-
(2011)
Journal of Computational Science
, vol.2
, Issue.1
, pp. 9-17
-
-
Caiazzo, A.1
Evans, D.2
Falcone, J.3
-
75
-
-
84856965068
-
Multi-scale simulations of the dynamics of in-stent restenosis: Impact of stent deployment and design
-
H. Tahir, A. G. Hoekstra, E. Lorenz et al., "Multi-scale simulations of the dynamics of in-stent restenosis: impact of stent deployment and design", Interface Focus, vol. 1, no. 3, pp. 365-373, 2011.
-
(2011)
Interface Focus
, vol.1
, Issue.3
, pp. 365-373
-
-
Tahir, H.1
Hoekstra, A.G.2
Lorenz, E.3
-
76
-
-
56249123996
-
Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling
-
A. K. Chavali, E. P. Gianchandani, K. S. Tung, M. B. Lawrence, S. M. Peirce, and J. A. Papin, "Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling", Trends in Immunology, vol. 29, no. 12, pp. 589-599, 2008.
-
(2008)
Trends in Immunology
, vol.29
, Issue.12
, pp. 589-599
-
-
Chavali, A.K.1
Gianchandani, E.P.2
Tung, K.S.3
Lawrence, M.B.4
Peirce, S.M.5
Papin, J.A.6
-
77
-
-
77953811826
-
Systems biology: An approach
-
P. Kohl, E. J. Crampin, T. A. Quinn, and D. Noble, "Systems biology: an approach", Clinical Pharmacology and Therapeutics, vol. 88, no. 1, pp. 25-33, 2010.
-
(2010)
Clinical Pharmacology and Therapeutics
, vol.88
, Issue.1
, pp. 25-33
-
-
Kohl, P.1
Crampin, E.J.2
Quinn, T.A.3
Noble, D.4
-
78
-
-
85100469032
-
Physio-environmental sensing and livemodeling
-
F. Castiglione, V. Diaz, A. Gaggioli et al., "Physio-environmental sensing and livemodeling", Journal of Medical Internet Research, vol. 15, no. 1, article e3, 2013.
-
(2013)
Journal of Medical Internet Research
, vol.15
, Issue.1
-
-
Castiglione, F.1
Diaz, V.2
Gaggioli, A.3
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