메뉴 건너뛰기




Volumn 290, Issue 20, 2015, Pages 12614-12629

Crystal structure of barley limit dextrinase-limit dextrinase inhibitor (LD-LDI) complex reveals insights into mechanism and diversity of cereal type inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; ENZYME ACTIVITY; ENZYME INHIBITION; ENZYMES; HYDROLASES; STARCH; SURFACE PLASMON RESONANCE;

EID: 84929347435     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M115.642777     Document Type: Article
Times cited : (17)

References (57)
  • 1
    • 1642367502 scopus 로고    scopus 로고
    • Starch: Composition, fine structure and architecture
    • Tester, R. F., Karkalas, J., and Qi, X. (2004) Starch: composition, fine structure and architecture. J. Cereal Sci. 39, 151-165
    • (2004) J. Cereal Sci. , vol.39 , pp. 151-165
    • Tester, R.F.1    Karkalas, J.2    Qi, X.3
  • 3
    • 77952466937 scopus 로고    scopus 로고
    • Starch: Its metabolism, evolution, and biotechnological modification in plants
    • Zeeman, S. C., Kossmann, J., and Smith, A. M. (2010) Starch: Its metabolism, evolution, and biotechnological modification in plants. Annu. Rev. Plant Biol. 61, 209-234
    • (2010) Annu. Rev. Plant Biol. , vol.61 , pp. 209-234
    • Zeeman, S.C.1    Kossmann, J.2    Smith, A.M.3
  • 4
    • 0033102225 scopus 로고    scopus 로고
    • Asingle limit dextrinase gene is expressed both in the developing endosperm and in germinated grains of barley
    • Burton, R. A., Zhang, X. Q., Hrmova, M., and Fincher, G. B. (1999)Asingle limit dextrinase gene is expressed both in the developing endosperm and in germinated grains of barley. Plant Physiol. 119, 859-871
    • (1999) Plant Physiol. , vol.119 , pp. 859-871
    • Burton, R.A.1    Zhang, X.Q.2    Hrmova, M.3    Fincher, G.B.4
  • 5
    • 0032920149 scopus 로고    scopus 로고
    • Isolation and characterization of the gene encoding the starch debranching enzyme limit dextrinase from germinating barley
    • Kristensen, M., Lok, F., Planchot, V., Svendsen, I., Leah, R., and Svensson, B. (1999) Isolation and characterization of the gene encoding the starch debranching enzyme limit dextrinase from germinating barley. Biochim. Biophys. Acta 1431, 538-546
    • (1999) Biochim. Biophys. Acta , vol.1431 , pp. 538-546
    • Kristensen, M.1    Lok, F.2    Planchot, V.3    Svendsen, I.4    Leah, R.5    Svensson, B.6
  • 6
    • 70350776503 scopus 로고    scopus 로고
    • Secretory expression of functional barley limit dextrinase by Pichia pastoris using high cell-density fermentation
    • Vester-Christensen, M. B., Hachem, M. A., Naested, H., and Svensson, B. (2010) Secretory expression of functional barley limit dextrinase by Pichia pastoris using high cell-density fermentation. Protein Expr. Purif. 69, 112-119
    • (2010) Protein Expr. Purif. , vol.69 , pp. 112-119
    • Vester-Christensen, M.B.1    Hachem, M.A.2    Naested, H.3    Svensson, B.4
  • 8
    • 0037341209 scopus 로고    scopus 로고
    • Mutational analysis of the pullulanase-type debranching enzyme of maize indicates multiple functions in starch metabolism
    • Dinges, J. R., Colleoni, C., James, M. G., and Myers, A. M. (2003) Mutational analysis of the pullulanase-type debranching enzyme of maize indicates multiple functions in starch metabolism. Plant Cell 15, 666-680
    • (2003) Plant Cell , vol.15 , pp. 666-680
    • Dinges, J.R.1    Colleoni, C.2    James, M.G.3    Myers, A.M.4
  • 9
    • 57749084358 scopus 로고    scopus 로고
    • Further evidence for the mandatory nature of polysaccharide debranching for the aggregation of semicrystalline starch and for overlapping functions of debranching enzymes in Arabidopsis leaves
    • Wattebled, F., Planchot, V., Dong, Y., Szydlowski, N., Pontoire, B., Devin, A., Ball, S., and D'Hulst, C. (2008) Further evidence for the mandatory nature of polysaccharide debranching for the aggregation of semicrystalline starch and for overlapping functions of debranching enzymes in Arabidopsis leaves. Plant Physiol. 148, 1309-1323
    • (2008) Plant Physiol. , vol.148 , pp. 1309-1323
    • Wattebled, F.1    Planchot, V.2    Dong, Y.3    Szydlowski, N.4    Pontoire, B.5    Devin, A.6    Ball, S.7    D'hulst, C.8
  • 11
    • 4143071393 scopus 로고    scopus 로고
    • Antisense downregulation of the barley limit dextrinase inhibitor modulates starch granule size distribution, starch composition and amylopectin structure
    • Stahl, Y., Coates, S., Bryce, J. H., and Morris, P. C. (2004) Antisense downregulation of the barley limit dextrinase inhibitor modulates starch granule size distribution, starch composition and amylopectin structure. Plant J. 39, 599-611
    • (2004) Plant J. , vol.39 , pp. 599-611
    • Stahl, Y.1    Coates, S.2    Bryce, J.H.3    Morris, P.C.4
  • 13
    • 0028095685 scopus 로고
    • Purification and characterisation of limit dextrinase inhibitors from barley
    • MacGregor, A. W., Macri, L. J., Schroeder, S. W., and Bazin, S. L. (1994) Purification and characterisation of limit dextrinase inhibitors from barley. J. Cereal Sci. 20, 33-41
    • (1994) J. Cereal Sci. , vol.20 , pp. 33-41
    • Macgregor, A.W.1    Macri, L.J.2    Schroeder, S.W.3    Bazin, S.L.4
  • 14
    • 0037401861 scopus 로고    scopus 로고
    • Stoichiometry of the complex formed by barley limit dextrinase with its endogenous inhibitor. Determination by electrospray time-offlight mass spectrometry
    • MacGregor, A. W., Donald, L. J., MacGregor, E. A., and Duckworth, H. W. (2003) Stoichiometry of the complex formed by barley limit dextrinase with its endogenous inhibitor. Determination by electrospray time-offlight mass spectrometry. J. Cereal Sci. 37, 357-362
    • (2003) J. Cereal Sci. , vol.37 , pp. 357-362
    • Macgregor, A.W.1    Donald, L.J.2    Macgregor, E.A.3    Duckworth, H.W.4
  • 18
    • 0003076963 scopus 로고
    • Recent changes to the MOSFLM package for processing film and image plate data
    • Leslie, A. G. (1992) Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 ESF-EAMCB Newsl. Protein Crystallogr., No. 26
    • (1992) Joint CCP4 ESF-EAMCB Newsl. Protein Crystallogr , Issue.26
    • Leslie, A.G.1
  • 24
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice, P., Longden, I., and Bleasby, A. (2000) EMBOSS: The European molecular biology open software suite. Trends Genet. 16, 276-277
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 25
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 26
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • Gouet, P., Courcelle, E., Stuart, D., and Métoz, F. (1999) ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15, 305-308
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.3    Métoz, F.4
  • 27
    • 0031848098 scopus 로고    scopus 로고
    • Extending the range of rate constants available from BIACORE: Interpreting mass transport-influenced binding data
    • Myszka, D. G., He, X., Dembo, M., Morton, T. A., and Goldstein, B. (1998) Extending the range of rate constants available from BIACORE: Interpreting mass transport-influenced binding data. Biophys. J. 75, 583-594
    • (1998) Biophys. J. , vol.75 , pp. 583-594
    • Myszka, D.G.1    He, X.2    Dembo, M.3    Morton, T.A.4    Goldstein, B.5
  • 29
    • 77958500768 scopus 로고    scopus 로고
    • Crystal structure of an essential enzyme in seed starch degradation: Barley limit dextrinase in complex with cyclodextrins
    • Vester-Christensen, M. B., Abou Hachem, M., Svensson, B., and Henriksen, A. (2010) Crystal structure of an essential enzyme in seed starch degradation: barley limit dextrinase in complex with cyclodextrins. J. Mol. Biol. 403, 739-750
    • (2010) J. Mol. Biol. , vol.403 , pp. 739-750
    • Vester-Christensen, M.B.1    Abou Hachem, M.2    Svensson, B.3    Henriksen, A.4
  • 30
    • 0032528247 scopus 로고    scopus 로고
    • A novel strategy for inhibition of α-amylases: Yellow meal worm α-amylase in complex with the Ragi bifunctional inhibitor at 2.5 Å resolution
    • Strobl, S., Maskos, K., Wiegand, G., Huber, R., Gomis-Rüth, F. X., and Glockshuber, R. (1998) A novel strategy for inhibition of α-amylases: yellow meal worm α-amylase in complex with the Ragi bifunctional inhibitor at 2.5 Å resolution. Structure Fold Des. 6, 911-921
    • (1998) Structure Fold Des. , vol.6 , pp. 911-921
    • Strobl, S.1    Maskos, K.2    Wiegand, G.3    Huber, R.4    Gomis-Rüth, F.X.5    Glockshuber, R.6
  • 31
    • 0035831255 scopus 로고    scopus 로고
    • Relationship of sequence and structure to specificity in the α-amylase family of enzymes
    • MacGregor, E. A., Janecek, S., and Svensson, B. (2001) Relationship of sequence and structure to specificity in the α-amylase family of enzymes. Biochim. Biophys. Acta 1546, 1-20
    • (2001) Biochim. Biophys. Acta , vol.1546 , pp. 1-20
    • Macgregor, E.A.1    Janecek, S.2    Svensson, B.3
  • 32
    • 63649158522 scopus 로고    scopus 로고
    • Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice
    • Li, Q. F., Zhang, G. Y., Dong, Z. W., Yu, H. X., Gu, M. H., Sun, S. S., and Liu, Q. Q. (2009) Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice. Plant Physiol. Biochem. 47, 351-358
    • (2009) Plant Physiol. Biochem. , vol.47 , pp. 351-358
    • Li, Q.F.1    Zhang, G.Y.2    Dong, Z.W.3    Yu, H.X.4    Gu, M.H.5    Sun, S.S.6    Liu, Q.Q.7
  • 33
    • 0031472672 scopus 로고    scopus 로고
    • Pullulanase in mung bean cotyledons. Purification, some properties and developmental pattern during and following germination
    • Morinaga, K., Honda, E., Morohashi, Y., and Matsushima, H. (1997) Pullulanase in mung bean cotyledons. Purification, some properties and developmental pattern during and following germination. Physiol. Plant 101, 519-525
    • (1997) Physiol. Plant , vol.101 , pp. 519-525
    • Morinaga, K.1    Honda, E.2    Morohashi, Y.3    Matsushima, H.4
  • 34
    • 0041623284 scopus 로고
    • Purification of oat debranching enzyme and occurrence of inactive debranching enzyme in cereals
    • Yamada, J. (1981) Purification of oat debranching enzyme and occurrence of inactive debranching enzyme in cereals. Agric. Biol. Chem. 45, 1013-1015
    • (1981) Agric. Biol. Chem. , vol.45 , pp. 1013-1015
    • Yamada, J.1
  • 35
    • 0016466535 scopus 로고
    • Limit dextrinases from ungerminated oats (Avena sativa L.) and ungerminated rice (Oryza sativa L.)
    • Dunn, G., and Manners, D. J. (1975) Limit dextrinases from ungerminated oats (Avena sativa L.) and ungerminated rice (Oryza sativa L.). Carbohydr. Res. 39, 283-293
    • (1975) Carbohydr. Res. , vol.39 , pp. 283-293
    • Dunn, G.1    Manners, D.J.2
  • 36
    • 0001489992 scopus 로고    scopus 로고
    • Characterization of starch-debranching enzymes in pea embryos
    • Zhu, Z. P., Hylton, C. M., Rossner, U., and Smith, A. M. (1998) Characterization of starch-debranching enzymes in pea embryos. Plant Physiol. 118, 581-590
    • (1998) Plant Physiol. , vol.118 , pp. 581-590
    • Zhu, Z.P.1    Hylton, C.M.2    Rossner, U.3    Smith, A.M.4
  • 37
    • 0001741402 scopus 로고
    • Purification and properties of spinach leaf debranching enzyme
    • Ludwig, I., Ziegler, P., and Beck, E. (1984) Purification and properties of spinach leaf debranching enzyme. Plant Physiol. 74, 856-861
    • (1984) Plant Physiol. , vol.74 , pp. 856-861
    • Ludwig, I.1    Ziegler, P.2    Beck, E.3
  • 38
    • 0001489664 scopus 로고
    • Characterization and subcellular localization of debranching enzyme and endoamylase from leaves of sugar beet
    • Li, B., Servaites, J. C., and Geiger, D. R. (1992) Characterization and subcellular localization of debranching enzyme and endoamylase from leaves of sugar beet. Plant Physiol. 98, 1277-1284
    • (1992) Plant Physiol. , vol.98 , pp. 1277-1284
    • Li, B.1    Servaites, J.C.2    Geiger, D.R.3
  • 39
    • 39649119081 scopus 로고    scopus 로고
    • In vitro pullulanase activity of wheat (Triticum aestivum L.) limit-dextrinase type starch debranching enzyme is modulated by redox conditions
    • Repellin, A., Båga, M., and Chibbar, R. N. (2008) In vitro pullulanase activity of wheat (Triticum aestivum L.) limit-dextrinase type starch debranching enzyme is modulated by redox conditions. J. Cereal Sci. 47, 302-309
    • (2008) J. Cereal Sci. , vol.47 , pp. 302-309
    • Repellin, A.1    Båga, M.2    Chibbar, R.N.3
  • 41
    • 1042301044 scopus 로고    scopus 로고
    • Structural basis for the inhibition of mammalian and insect α-amylases by plant protein inhibitors
    • Payan, F. (2004) Structural basis for the inhibition of mammalian and insect α-amylases by plant protein inhibitors. Biochim. Biophys. Acta 1696, 171-180
    • (2004) Biochim. Biophys. Acta , vol.1696 , pp. 171-180
    • Payan, F.1
  • 43
    • 0034098039 scopus 로고    scopus 로고
    • Structure of the bifunctional inhibitor of trypsin and α-amylase from ragi seeds at 2.2 Åresolution
    • Gourinath, S., Alam, N., Srinivasan, A., Betzel, C., and Singh, T. P. (2000) Structure of the bifunctional inhibitor of trypsin and α-amylase from ragi seeds at 2.2 Åresolution. Acta Crystallogr.DBiol. Crystallogr. 56, 287-293
    • (2000) Acta Crystallogr.DBiol. Crystallogr. , vol.56 , pp. 287-293
    • Gourinath, S.1    Alam, N.2    Srinivasan, A.3    Betzel, C.4    Singh, T.P.5
  • 45
    • 33846219183 scopus 로고    scopus 로고
    • The barley limit dextrinase inhibitor: Gene expression, protein location and interaction with 14-3-3 protein
    • Stahl, Y., Alexander, R. D., Coates, S., Bryce, J. H., Jenkinson, H. R., and Morris, P. C. (2007) The barley limit dextrinase inhibitor: Gene expression, protein location and interaction with 14-3-3 protein. Plant Sci. 172, 452-461
    • (2007) Plant Sci. , vol.172 , pp. 452-461
    • Stahl, Y.1    Alexander, R.D.2    Coates, S.3    Bryce, J.H.4    Jenkinson, H.R.5    Morris, P.C.6
  • 46
    • 0000372879 scopus 로고    scopus 로고
    • Protein-protein interactions: Interface structure, binding thermodynamics, and mutational analysis
    • Stites, W. (1997) Protein-protein interactions: Interface structure, binding thermodynamics, and mutational analysis. Chem. Rev. 97, 1233-1250
    • (1997) Chem. Rev. , vol.97 , pp. 1233-1250
    • Stites, W.1
  • 47
    • 1942455756 scopus 로고    scopus 로고
    • Inhibitory effect of 0.19 α-amylase inhibitor from wheat kernel on the activity of porcine pancreasα-amylase and its thermal stability
    • Oneda, H., Lee, S., and Inouye, K. (2004) Inhibitory effect of 0.19 α-amylase inhibitor from wheat kernel on the activity of porcine pancreasα-amylase and its thermal stability. J. Biochem. 135, 421-427
    • (2004) J. Biochem. , vol.135 , pp. 421-427
    • Oneda, H.1    Lee, S.2    Inouye, K.3
  • 48
    • 0034039797 scopus 로고    scopus 로고
    • Electrostatic aspects of protein-protein interactions
    • Sheinerman, F. B., Norel, R., and Honig, B. (2000) Electrostatic aspects of protein-protein interactions. Curr. Opin. Struct. Biol. 10, 153-159
    • (2000) Curr. Opin. Struct. Biol. , vol.10 , pp. 153-159
    • Sheinerman, F.B.1    Norel, R.2    Honig, B.3
  • 49
    • 0002440434 scopus 로고    scopus 로고
    • Synthesis of limit dextrinase in germinated barley kernels and aleurone tissues
    • Schroeder, S., and MacGregor, A. (1998) Synthesis of limit dextrinase in germinated barley kernels and aleurone tissues. J. Am. Soc. Brew. Chem. 56, 32-37
    • (1998) J. Am. Soc. Brew. Chem. , vol.56 , pp. 32-37
    • Schroeder, S.1    Macgregor, A.2
  • 50
    • 79954988984 scopus 로고    scopus 로고
    • Proteomes of the barley aleurone layer: A model system for plant signalling and protein secretion
    • Finnie, C., Andersen, B., Shahpiri, A., and Svensson, B. (2011) Proteomes of the barley aleurone layer: A model system for plant signalling and protein secretion. Proteomics 11, 1595-1605
    • (2011) Proteomics , vol.11 , pp. 1595-1605
    • Finnie, C.1    Andersen, B.2    Shahpiri, A.3    Svensson, B.4
  • 51
    • 0000687121 scopus 로고
    • Development of limit dextrinase in germinated barley (Hordeum vulgare L.): Evidence of proteolytic activation
    • Longstaff, M. A., and Bryce, J. H. (1993) Development of limit dextrinase in germinated barley (Hordeum vulgare L.): Evidence of proteolytic activation. Plant Physiol. 101, 881-889
    • (1993) Plant Physiol. , vol.101 , pp. 881-889
    • Longstaff, M.A.1    Bryce, J.H.2
  • 52
    • 3543141896 scopus 로고    scopus 로고
    • Proteome analysis of barley seeds: Identification of major proteins from two-dimensional gels (pl 4-7)
    • Østergaard, O., Finnie, C., Laugesen, S., Roepstorff, P., and Svennson, B. (2004) Proteome analysis of barley seeds: Identification of major proteins from two-dimensional gels (pl 4-7). Proteomics 4, 2437-2447
    • (2004) Proteomics , vol.4 , pp. 2437-2447
    • Østergaard, O.1    Finnie, C.2    Laugesen, S.3    Roepstorff, P.4    Svennson, B.5
  • 53
    • 0002710166 scopus 로고    scopus 로고
    • A multigene family of trypsin/α-amylase inhibitors from cereals
    • 1st Ed., Springer, Dordrecht, The Netherlands
    • Carbonero, P., and García-Olmedo, F. (1999) A multigene family of trypsin/α-amylase inhibitors from cereals. Seed Proteins, 1st Ed., pp. 617-633, Springer, Dordrecht, The Netherlands
    • (1999) Seed Proteins , pp. 617-633
    • Carbonero, P.1    García-Olmedo, F.2
  • 54
    • 0035066836 scopus 로고    scopus 로고
    • Global indicators of x-ray data quality
    • Weiss, M. (2001) Global indicators of x-ray data quality. J. Appl. Crystallogr. 34, 130-135
    • (2001) J. Appl. Crystallogr. , vol.34 , pp. 130-135
    • Weiss, M.1
  • 55
    • 0032480808 scopus 로고    scopus 로고
    • Structural determinants of the bifunctional corn Hageman factor inhibitor: X-ray crystal structure at 1.95 angstrom resolution
    • Behnke, C. A., Yee, V. C., Trong, I. L., Pedersen, L. C., Stenkamp, R. E., Kim, S. S., Reeck, G. R., and Teller, D. C. (1998) Structural determinants of the bifunctional corn Hageman factor inhibitor: X-ray crystal structure at 1.95 angstrom resolution. Biochemistry 37, 15277-15288
    • (1998) Biochemistry , vol.37 , pp. 15277-15288
    • Behnke, C.A.1    Yee, V.C.2    Trong, I.L.3    Pedersen, L.C.4    Stenkamp, R.E.5    Kim, S.S.6    Reeck, G.R.7    Teller, D.C.8
  • 56
    • 0030815231 scopus 로고    scopus 로고
    • Tertiary and quaternary structures of 0.19 α-amylase inhibitor from wheat kernel determined by X-ray analysis at 2.06 angstrom resolution
    • Oda, Y., Matsunaga, T., Fukuyama, K., Miyazaki, T., and Morimoto, T. (1997) Tertiary and quaternary structures of 0.19 α-amylase inhibitor from wheat kernel determined by X-ray analysis at 2.06 angstrom resolution. Biochemistry 36, 13503-13511
    • (1997) Biochemistry , vol.36 , pp. 13503-13511
    • Oda, Y.1    Matsunaga, T.2    Fukuyama, K.3    Miyazaki, T.4    Morimoto, T.5
  • 57
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel, E., and Henrick, K. (2007) Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797
    • (2007) J. Mol. Biol. , vol.372 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.