The eight-cysteine motif, a versatile structure in plant proteins

Plant Physiology and Biochemistry

Volumn 42, Issue 5, 2004, Pages 355-365

  José Estanyol, Matilde ^a   Gomis Rüth, F Xavier ^b   Puigdomènech, Pere ^a  

^a CSIC   (Spain)

^b INSTITUT DE BIOLOGIA MOLECULAR DE BARCELONA   (Spain)

Author keywords

2S albumins; Cereal protease inhibitors; Eight cysteine motif; HyPRPs; LTPs

Indexed keywords

COMPLEMENTARY DNA; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARABIDOPSIS; CELL WALL; CHEMICAL STRUCTURE; CHEMISTRY; GENE EXPRESSION REGULATION; GENE LIBRARY; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; PROTEIN CONFORMATION; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; SHORT SURVEY;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ARABIDOPSIS; CELL WALL; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, PLANT; GENE LIBRARY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 3042539813     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2004.03.009     Document Type: Short Survey

References (79)

1. Arondel V., Vergnolle Ch., Cantrel C., Kader J.-C. Lipid transfer proteins are encoded by a small multigene family in Arabidopsis thaliana. Plant Sci. 157:2000;1-12
2. Barciszewski J., Szymanski M., Haertlé T. Minireview: analysis of rape seed napin structure and potential roles of the storage protein. J. Protein Chem. 19:2000;249-254
3. Baud F., Pebay-Peyroula E., Cohen-Addad C., Odani S., Lehmann M.S. Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family. J. Mol. Biol. 231:1993;877-887
4. Behnke C.A., Yee V.C., Le Trong I., Pedersen L.C., Stenkamp R.E., Kim S.-S., Reeck G.R., Teller D.C. Structural determinants of the bifunctional corn Hageman Factor inhibitor: X-ray crystal structure at 1.95 Å resolution. Biochemistry. 37:1998;15277-15288
5. Blein J.P., Coutos-Thévenot P., Marion D., Ponchet M. From elicitins to lipid-transfer proteins: a new insight in cell signalling involved in plant defence mechanisms. Trends Plant Sci. 7:2002;293-296
6. Bode W., Huber R. Structural basis of the endoproteinase-protein inhibitor interaction. Biochim. Biophys. Acta. 1447:2000;241-252
7. Bohlmann H., Clausen S., Behnke S., Giese H., Hiller C., Reimann-Philipp U., Schrader G., Barkholt V., Apel K. Leaf-specific thionins of barley a novel class of cell wall proteins toxic to plant-pathogenic fungi and possibly involved in the defence mechanism of plants. EMBO J. 7:1988;1559-1565
8. Borner G.H.H., Sherrier J., Stevens T.J., Arkin I.T., Dupree P. Prediction of glycosylphoshati dylinositol-anchored proteins in Arabidopsis. A genomic analysis. Plant Physiol. 129:2002;486-499
9. Branlard G., Amiour N., Igrejas G., Gaborit T., Herbette S., Dardevet M., Marion D. Diversity of puroindolines as revealed by two-dimensional electrophoresis. Proteomics. 3:2003;168-174
10. Broekaert W.F., Cammue B.P.A., De Bolle M.F.C., Thevissen K., De Samblanx G.W., Osborn R.W. Antimicrobial peptides from plants. Crit. Rev. Plant Sci. 16:1997;297-323
11. Broekaert W.F., Terras F.R.G., Cammue B.P.A., Osborn R.W. Plant defensins: novel antimicrobial peptides as components of the host defense system. Plant Physiol. 108:1995;1353-1358
12. Cammue B.P.A., Thevissen K., Hendriks M., Eggermont K., Goderis I.J., Proost P., Van Damme J., Osborn R.W., Guerbette F., Kader J.-C., Broekart W.F. A potent antimicrobial protein from onion seeds showing sequence homology to plant lipid transfer proteins. Plant Physiol. 109:1995;445-455
13. Charnet P., Molle G., Marion D., Rousset M., Lullien-Pellerin V. Puroindolines form ion channels in biological membranes. Biophys. J. 84:2003;2416-2426
14. Chong G.L., Reeck G.R. Interaction of trypsin, β-factor XIIa, and plasma Kallikrein with a trypsin inhibitor isolated from barley seeds: a comparison with the corn inhibitor of activated Hageman factor. Thrombosis Res. 48:1987;211-221
15. Clark A.M., Bohnert H.J. Cell-specific expression of genes of the lipid transfer protein family from Arabidopsis thaliana. Plant Cell Physiol. 40:1999;69-76
16. Clore G.M., Nilges M., Sukumaran D.K., Brnnger A.T., Karplus M., Gronenborn A.M. The three-dimensional structure of α1-purothionin in solution: combined use of nuclear magnetic resonance, distance geometry and restrained molecular dynamics. EMBO J. 5:1986;2729-2735
17. Egorov T.A., Odintsova T.I., Kh. Musolyamov A., Fido R., Tatham A.S., Shewry P.R. Disulphide structure of a sunflower seed albumin: conserved and variant disulphide bonds in the cereal prolamin superfamily. FEBS Lett. 396:1996;285-288
18. Fefeu S., Bouaziz S., Huet J.C., Pernollet J.-C., Guittet E. Three-dimensional solution structure of β cryptogein, a β elicitin secreted by a phytopathogenic fungus Phytophthora cryptogea. Protein Sci. 6:1997;2279-2284
19. Felsenstein J. PHYLIP (Phylogeny Inference Package) Version 3.5c. Distributed by the Author. 1993;Department of Genetics, University of Washington, Seattle
20. Fernandez-Tornero C., Ramon A., Navarro M.L., Varela J., Jiménez-Gallego G. Síntesis of proteins with disulfide bonds in E. coli using defined culture media. Biotechniques. 32:2002;1238-1242
21. Florack D.E.A., Stiekema W.J. Thionins: properties, possible biological roles and mechanisms of action. Plant Mol. Biol. 26:1994;25-37
22. Garcia-Olmedo F., Molina A., Segura A., Moreno M. The defensive role of non-specific lipid-transfer proteins in plants. Trends Microbiol. 3:1995;72-74
23. Garcia-Olmedo F., Salcedo G., Sanchez-Monge R., Gomez L., Royo J., Carbonero P. Plant proteinaceous inhibitors of proteinases and α-amylases. Oxford University Press. Plant Mol. Cell. Biol. 4:1987;275-334
24. Gautier M.-F., Aleman M.-E., Guirao A., Marion D., Joudrier P. Triticum aestivum puroindolines, two basic cysteine-rich seed proteins: cDNA sequence analysis and developmental gene expression. Plant Mol. Biol. 25:1994;43-57
25. Gautier M.F., Cosson P., Guirao A., Alary R., Joudrier P. Puroindoline genes are highly conserved in diploid ancestor wheats and related species but absent in tetraploid Triticum species. Science. 153:2000;81-91
26. Gijzen M., Miller S., Kuflu K., Buzzell R.I., Miki B.L.A. Hydrophobic protein synthesized in the pod endocarp adheres to the seed surface. Plant Physiol. 120:1999;951-959
27. 1H-NMR data. Eur. J. Biochem. 226:1994;413-422
28. Gomar J., Ch. Petit M., Sodano P., Sy D., Marion D., Kader J.C., Vovelle F., Ptak M. Solution structure and lipid binding of a non-specific lipid transfer protein extracted from maize seeds. Protein Sci. 5:1996;565-577
29. Gonzalez R., Varela J., Carreira J., Polo F. Soybean hydrophobic protein and soybean hull allergy. Lancet. 346:1995;48-49
30. Goo J.H., Park A.R., Park W.J., Park O.K. Selection of Arabidopsis genes encoding secreted and plasma membrane proteins. Plant Mol. Biol. 41:1999;415-423
31. Gourinath S., Alam N., Srinivasan A., Betzel Ch., Singh T.P. Structure of the bifunctional inhibitor of trypsin and α-amylase from ragi seeds at 2.2 Å resolution. Acta Crystallogr. Sect. D. 56:2000;287-293
32. Guerche P., Tire Ch., de Sa F.G., De Clerq A., Van Montagu M., Krebbers E. Differential expression of the Arabidopsis 2S-albumin genes and the effect of increasing gene family size. Plant Cell. 2:1990;469-478
33. Heinemann B., Andersen K.V., Nielsen P.R., Bech L.M., Poulsen F.M. Structure in solution of a four-helix lipid binding protein. Protein Sci. 5:1996;13-23
34. Henrissat B., Popineau Y., Kader J.-C. Hydrophobic-cluster analysis of plant protein sequences. Biochem. J. 255:1988;901-905
35. Janssen B.J., Schirra H.J., Lay F.T., Anderson M.A., Craik D.J. Structure of petunia hybrida defensin 1, a novel plant defensin with five disulfide bonds. Biochemistry. 42:2003;8214-8222
36. Jolly C.J., Rahman S., Kortt A.A., Higgins T.J.V. Characterization of the wheat Mr 15 000 "grain softness protein" and analysis of the relationship between its accumulation in the whole seed and grain softness. Theor. Appl. Genet. 86:1993;589-597
37. Josè-Estanyol M., Puigdomènech P. Plant cell wall glycoproteins and their genes. Plant Physiol. Biochem. 38:2000;97-108
38. Josè-Estanyol M., Ruiz-Avila L., Puigdomènech P. A maize embryo-specific gene encodes a proline-rich and hydrophobic protein. Plant Cell. 4:1992;413-423
39. Kader J.C. Lipid-transfer proteins in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47:1996;627-654
40. Keresztessy Z., Hughes M.A. Homology modelling and molecular dynamics aided analysis of ligand complexes demonstrates functional properties of lipid-transfer proteins encoded by the barley low-temperature-inducible gene family, blt4. Plant J. 14:1998;523-533
41. Lauga B., Charbonnel-Campaa L., Combes D. Characterization of MZm3-3, a Zea mays tapetum-specific transcript. Plant Sci. 157:2000;65-75
42. Lay F.T., Brugliera F., Anderson M.A. Isolation and properties of floral defensins from ornamental tobacco and petunia. Plant Physiol. 131:2003;1283-1293
43. Lee J.Y., Min K., Cha H., Shin D.H., Hwang K.Y., Suh S.W. Rice non-specific lipid transfer protein: the 1.6 Å crystal structure in the unliganded state reveals a small hydrophobic cavity. J. Mol. Biol. 276:1998;437-448
44. Lerche M.H., Kragelund B.B., Bech L.M., Poulsen F.M. Barley lipid-transfer protein complexed with palmitoyl CoA: the structure reveals a hydrophobic binding site that can expand to fit both large and small lipid-like ligands. Structure. 5:1997;291-306
45. Mikes V., Milat M.-L., Ponchet M., Panabières F., Ricci P., Blein J.-P. Elicitins, proteinaceous elicitors of plant defense, are a new class of sterol carrier proteins. Biochem. Biophys. Res. Commun. 245:1998;133-139
46. Neuteboom L.W., Ng J.M.Y., Kuyper M., Clijdesdale O.R., Hooykaas P.J.J., van der Zaal B.J. Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation. Plant Mol. Biol. 39:1999;273-287
47. Oda Y., Matsunaga T., Fukuyama K., Miyazaki T., Morimoto T. Tertiary and quaternary structures of 0.19 α-amylase inhibitor from wheat kernel determined by X-ray analysis at 2.06 Å resolution. Biochemistry. 36:1997;13503-13511
48. Odani S., Koide T., Ono T., Seto Y., Tanaka T. Soybean hydrophobic protein. Isolation, partial characterization and the complete primary structure. Eur. J. Biochem. 162:1987;485-491
49. Oñaderra M., Monsalve R.I., Mancheño J.M., Villalba M., Martinez del Pozo A., Gavilanes J.G., Rodriguez R. Food mustard allergen interaction with phospholipid vesicles. Eur. J. Biochem. 225:1994;609-615
50. Palomares O., Monsalve R., Rodriguez R., Villalba M. Recombinant pronapin precursor produced in Pichia pastoris displays structural and immunological equivalent properties to its mature product isolated from rapeseed. Eur. J. Biochem. 269:2002;2538-2545
51. Pantoja-Uceda D., Bruix M., Giménez-Gallego G., Rico M., Santero J. Solution structure of RicC3, a 2S-albumin storage protein from Ricinus communis. Biochemistry. 42:2003;13839-13847
52. Pantoja-Uceda D., Bruix M., Santoro J., Rico M., Monsalve R., Villalba M. Solution structure of allergenic 2S-albumins. Biochem. Soc. Trans. 30:2002;919-924
53. Pastorello E.A., Pompei C., Pravettoni V., Brenna O., Farioli L., Trambaioli Ch., Conti A. Lipid transfer proteins and 2S-albumins as allergens. Allergy. 67:(5 Suppl):2001;45-47
54. Paul W., Hodge R., Smartt S., Draper J., Scott R. The isolation and characterisation of the tapetum-specific Arabidopsis thaliana A9 gene. Plant Mol. Biol. 19:1992;611-622
55. Poznanski J., Sodano P., Suh S.W., Lee J.Y., Ptak M., Vovelle F. Solution structure of a lipid transfer protein extracted from rice seeds. Comparison with homologous proteins. Eur. J. Biochem. 259:1999;692-708
56. Richards K.D., Gardner R.C. pEARLI1 (Accession No. L43080): an Arabidopsis member of a conserved gene family. Plant Physiol. 109:1995;1497
57. Richardson M. Seed storage proteins: the enzyme inhibitors. Rogers L.J. Methods in Plant Biochemistry. 5:1991;259-305 Academic Press, London
58. 1H NMR assignment and global fold of napin BnIb, a representative 2S-albumin seed protein. Biochemistry. 35:1996;15672-15682
59. Ryan C.A. Proteinase inhibitors in plants: genes for improving defenses against insects and pathogens. Annu. Rev. Phytopathol. 28:1990;425-449
60. Sanchez-Monge R., Gomez L., Barber D., Lopez-Otin C., Armentia A., Salcedo G. Wheat and barley allergens associated with baker's asthma. Glycosylated subunits of the α-amylase-inhibitor family have enhanced IgE-binding capacity. Biochem. J. 281:1992;401-405
61. Shewry P.R., Napier J.A., Tatham A.S. Seed storage proteins: structures and biosynthesis. Plant Cell. 7:1995;945-956
62. Shewry P.R., Tatham A.S. The prolamin storage proteins of cereal seeds: structure and evolution. Biochem. J. 267:1990;1-12
63. Shin D.H., Lee J.Y., Hwang K.Y., Kim K.K., Suh S.W. High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings. Structure. 3:1995;189-199
64. Shorrosh B.S., Wen L., Ch. Zen K., Huang J.-K., Pan J.S., Hermodson M.A., Tanaka K., Muthukrishnan S., Reeck G.R. A novel cereal storage protein: molecular genetics of the 19 kDa globulin of rice. Plant Mol. Biol. 18:1992;151-154
65. 1H NMR and fluorescence studies of the complexation of DMPG by wheat non-specific lipid transfer protein. Global fold of the complex. FEBS Lett. 416:1997;130-134
66. Sterk P., Booij H., Schellekens G.A., Van Kammen A., De Vries S.C. Cell-specific expression of the carrot EP2 lipid transfer protein gene. Plant Cell. 3:1991;907-921
67. Strobl S., Maskos K., Wiegand G., Huber R., Gomis-Rüth F.X., Glockshuber R. A novel strategy for inhibition of α-amylases: yellow meal worm α-amylase in complex with the Ragi bifunctional inhibitor at 2.5 Å resolution. Structure. 6:1998;911-921
68. Sweet R.M., Wright H.T., Janin J., Chotia C.H., Blow D.M. Crystal structure of the complex of porcine trypsin soybean trypsin inhibitor (Kunitz) at 2.6 Å resolution. Biochemistry. 13:1974;4212-4228
69. Tassin S., Broekaert W.F., Marion D., Acland D.P., Ptack M., Vovelle F., Sodano P. Solution structure of Ace-AMP1, a potent antimicrobial protein extracted from onion seeds. Structural analogies with plant non-specific lipid transfer proteins. Biochemistry. 37:1998;3623-3637
70. Tatham A.S., Masson P., Popineau Y. Conformational studies of peptides derived by the enzymic hydrolysis of a gamma-type gliadin. J. Cereal Sci. 11:1990;1-13
71. Terras F.R.G., Goderis I.J., Van Leuven F., Vanderleyden J., Cammue B.P.A., Broekaert W.F. In vitro antifungal activity of a radish (Raphanus sativus L.) seed protein homologous to nonspecific lipid transfer proteins. Plant Physiol. 100:1992;1055-1058
72. Thoma S., Hecht U., Kippers A., Botella J., De Vries S., Somerville C. Tissue-specific expression of a gene encoding a cell wall-localized lipid transfer protein from Arabidopsis. Plant Physiol. 105:1994;35-45
73. Thoma S., Kaneko Y., Somerville C. A non-specific lipid transfer protein from Arabidopsis is a cell wall protein. Plant J. 3:1993;427-436
74. Udenfriend S., Kodukula K. How glycosyl-phosphatidy linositol-anchored membrane proteins are made. Annu. Rev. Biochem. 64:1995;563-591
75. Vallée F., Kadziola A., Bourne Y., Juy M., Rodenburg K.W., Svensson B., Haser R. Barley α-amylase bound to its endogenous protein inhibitor BASI: crystal structure of the complex at 1.9 Å resolution. Structure. 6:1998;649-659
76. Van der Klei H., Van Damme J., Casteels P., Krebbers E. A fifth 2S-albumin isoform is present in Arabidopsis thaliana. Plant Physiol. 101:1993;1415-1416
77. Vignols F., Wigger M., Garcia Garrido J.M., Grellet F., Kader J.C., Delseny M. Rice lipid transfer protein (LTP) genes belong to a complex multigene family and are differentially regulated. Gene. 195:1997;177-186
78. Voss R.H., Ermler U., Essen L.-O., Wenzl G., Kim Y.-M., Flecker P. Crystal structure of the bifunctional soybean Bowman-Birk inhibitor at 0.28-nm resolution. Structural peculiarities in a folded protein conformation. Eur. J. Biochem. 242:1996;122-131
79. Woo Y.-M., Hu D.W.-N., Larkins B.A., Jung R. Genomics analysis of genes expressed in maize endosperm identifies novel seed proteins and clarifies patterns of zein gene expression. Plant Cell. 13:2001;2297-2317