A comparative study on genetic effects of artificial and natural habitat fragmentation on Loropetalum chinense (Hamamelidaceae) in Southeast China

Heredity

Volumn 114, Issue 6, 2015, Pages 544-551

  Yuan, N ^a   Comes, H P ^b   Cao, Y N ^a   Guo, R ^a   Zhang, Y H ^a   Qiu, Y X ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b UNIVERSITY OF SALZBURG   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE STUDY; CONSERVATION GENETICS; DICOTYLEDON; EVOLUTIONARY BIOLOGY; GENE FLOW; GENETIC VARIATION; HABITAT FRAGMENTATION; HETEROZYGOSITY; SPATIOTEMPORAL ANALYSIS;

CHINA; ZHEJIANG; ZHOUSHAN ISLANDS;

HAMAMELIDACEAE; LOROPETALUM CHINENSE;

MICROSATELLITE DNA; PLANT DNA;

ALLELE; BIOLOGICAL MODEL; CHINA; COMPARATIVE STUDY; DNA SEQUENCE; ECOSYSTEM; GENE FLOW; GENE LOCUS; GENETIC DRIFT; GENETIC VARIABILITY; GENETICS; GENOTYPE; HAMAMELIDACEAE; ISLAND (GEOLOGICAL); POPULATION GENETICS;

ALLELES; CHINA; DNA, PLANT; ECOSYSTEM; GENE FLOW; GENETIC DRIFT; GENETIC LOCI; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; HAMAMELIDACEAE; ISLANDS; MICROSATELLITE REPEATS; MODELS, GENETIC; SEQUENCE ANALYSIS, DNA;

EID: 84929287847     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2014.114     Document Type: Article

References (65)

1. Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J. (2008). Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Mol Ecol 17: 5177-5188
2. Amos W, Balmford A. (2001). When does conservation genetics matter? Heredity 87: 257-265
3. Barker BS, Rodriguez-Robles JA, Aran VS, Montoya A, Waide RB, Cook JA. (2012). Sea level, topography and island diversity: phylogeography of the Puerto Rican Red-eyed Coqui, Eleutherodactylus antillensis. Mol Ecol 21: 6033-6052
4. Bell RC, Brasileiro CA, Haddad CFB, Zamudio KR. (2012). Evolutionary history of Scinax treefrogs on land-bridge islands in south-eastern Brazil. J Biogeogr 39: 1733-1742
5. Bittkau C, Comes HP. (2005). Evolutionary processes in a continental island system: molecular phylogeography of the Aegean Nigella arvensis alliance (Ranunculaceae) inferred from chloroplast DNA. Mol Ecol 14: 4065-4083
6. Capula M, Ceccarelli A. (2003). Distribution on genetic variation and taxonomy of insular and mainland populations of the Italian wall lizard, Podarcis sicula. Amphibia-Reptilia 24: 483-495
7. Ciofi C, Beaumont MA, Singland IR, Bruford MW. (1999). Genetic divergence and units for conservation in the Komodo dragon Varanus komodoensis. P Roy Soc Lond B Bio 266: 2269-2274
8. Committee ZGHDZ. (2013). Zhong Guo Hai Dao Zhi. China Ocean Press: Beijing, China
9. Cornuet JM, Luikart G. (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014
10. Earl DA, vonHoldt BM. (2012). Structure harvester: a website and program for visualizing structure output and implementing the Evanno method. Conserv Genet Resour 4: 359-361
11. England PR, Osler GH, Woodworth LM, Montgomery ME, Briscoe DA, Frankham R. (2003). Effects of intense versus diffuse population bottlenecks on microsatellite genetic diversity and evolutionary potential. Conserv Genet 4: 595-604
12. Evanno G, Regnaut S, Goudet J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620
13. Excoffier L, Laval G, Schneider S. (2005). Arlequin version 3.0: an integrated software package for population genetics data analysis. Evolutionary bioinformatics online 1: 47-50
14. Ewers RM, Didham RK. (2006). Confounding factors in the detection of species responses to habitat fragmentation. Biol Rev 81: 117-142
15. Faubet P, Waples RS, Gaggiotti OE. (2007). Evaluating the performance of a multilocus Bayesian method for the estimation of migration rates. Mol Ecol 16: 1149-1166
16. Foufopoulos J, Ives AR. (1999). Reptile extinctions on land-bridge islands: life-history attributes and vulnerability to extinction. Am Nat 153: 1-25
17. Frankel OH, Soulé ME. (1981). Conservation and Evolution. Cambridge University Press: Cambridge, UK
18. Furlan E, Stoklosa J, Griffiths J, Gust N, Ellis R, Huggins RM, et al. (2012). Small population size and extremely low levels of genetic diversity in island populations of the platypus, Ornithorhynchus anatinus. Ecol Evol 2: 844-857
19. Garza JC, Williamson EG. (2001). Detection of reduction in population size using data from microsatellite loci. Mol Ecol 10: 305-318
20. Goudet J. (1995). FSTAT (version 1.2): a computer program to calculate F-statistics. J Hered 86: 485-486
21. Gu L, Zhang DX. (2008). Autogamy of an endangered species: Loropetalum subcordatum (Hamamelidaceae). J Syst Evol 46: 651-657
22. Guo XD. (1979). Sea level changes since late Pleistocene in China. Chin J Geol 4: 330-341
23. Hailer F, Helander B, Folkestad AO, Ganusevich SA, Garstad S, Hauff P, et al. (2006). Bottlenecked but long-lived: high genetic diversity retained in white-Tailed eagles upon recovery from population decline. Biol Lett 2: 316-319
24. Harrison S, Hastings A. (1996). Genetic and evolutionary consequences of metapopulation structure. Trends Ecol Evol 11: 180-183
25. Hutchison DW, Templeton AR. (1999). Correlation of pairwise genetic and geographic distance measures: inferring the relative influence of gene flow and drift on the distribution of genetic variability. Evolution 53: 1898-1914
26. Jensen JL, Bohonak AJ, Kelley ST. (2005). Isolation by distance, web service. BMC Genet 6: 13
27. Johnson JA, Toepfer JE, Dunn P. (2003). Contrasting patterns of mitochondrial and microsatellite population structure in fragmented populations of greater prairiechickens. Mol Ecol 12: 3335-3347
28. Jordan MA, Snell HL. (2008). Historical fragmentation of islands and genetic drift in populations of Galapagos lava lizards (Microlophus albemarlensis complex). Mol Ecol 17: 1224-1237
29. Keller LF, Jeffery KJ, Arcese P, Beaumont MA, Hochachka WM, Smith JN, et al. (2001). Immigration and the ephemerality of a natural population bottleneck: evidence from molecular markers. P Roy Soc Lond B Bio 268: 1387-1394
30. Knutson MG, Richardson WB, Reineke DM, Gray BR, Parmelee JR, Weick SE. (2004). Agricultural ponds support amphibian populations. Ecol Appl 14: 669-684
31. Kramer AT, Ison J, Ashley MV, Howe HF. (2008). The paradox of forest fragmentation genetics. Conserv Biol 22: 878-885
32. Kuo CH, Janzen FJ. (2004). Genetic effects of a persistent bottleneck on a natural population of ornate box turtles (Terrapene ornata). Conserv Genet 5: 425-437
33. Lande R. (1988). Genetics and demography in biological conservation. Science 241: 1455-1460
34. Lande R. (1994). Risk of population extinction from fixation of new deleterious mutations. Evolution 48: 1460-1469
35. Li Y. (1993). The General Laws of Species Diversity and Loss for Mammalian and Amphibians on Zhoushan Archipelago and Design Principles for Natural Reserves. Institute of Zoology: Beijing, China
36. Lian FQ, Xiao DX. (2001). Studies on the chromosome karyotype of Loropetalum chinense var. rubrum and Loropetalum chinense var. semperrubrum. Acta Agri Univ Jiangxiensis 23: 228-230
37. Liu M, Zhang J, Chen Y, Compton SG, Chen XY. (2013). Contrasting genetic responses to population fragmentation in a coevolving fig and fig wasp across a mainland-island archipelago. Mol Ecol 22: 4384-4396
38. Luikart G, Allendorf FW, Cornuet JM, Sherwin WB. (1998). Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89: 238-247
39. Luikart G, Cornuet JM. (1998). Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol 12: 228-237
40. Luo ZR, Yu MJ, Chen DL, Wu YG, Ding BY. (2012). Spatial associations of tree species in a subtropical evergreen broad-leaved forest. J Plant Ecol 5: 346-355
41. Nei M, Maruyama T, Chakraborty R. (1975). The bottleneck effect and genetic variability in populations. Evolution 29: 1-10
42. NGDCNH. (2012). The Zhoushan Archipelago. The Navigation Guarantee. The Navigation Guarantee Department (NGD) of the Chinese Navy Headquarter: Tianjin, China
43. Petit RJ, El Mousadik A, Pons O. (1998). Identifying populations for conservation on the basis of genetic markers. Conserv Biol 12: 844-855
44. Piry S, Luikart G, Cornuet JM. (1999). Bottleneck: a computer program for detecting recent reductions in the effective size using allele frequency data. J Hered 90: 502-503
45. Pritchard JK, Stephens M, Donnelly P. (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959
46. Rice WR. (1989). Analyzing tables of statistical tests. Evolution 43: 223-225
47. Schaal BA, Leverich WJ. (1996). Molecular variation in isolated plant populations. Plant Spec Biol 11: 33-40
48. Spear SF, Peterson CR, Matocq M, Storfer A. (2006). Molecular evidence for historical and recent population size reductions of tiger salamanders (Ambystoma tigrinum) in Yellowstone National Park. Conserv Genet 7: 605-611
49. Spiegelhalter DJ. (2002). Bayesian measures of model complexity and fit. J Roy Stat Soc B 64: 583-639
50. Srikwan S, Woodruff DS. (2000). Genetic erosion in isolated small-mammal populations following rainforest fragmentation. In: Young AG, Clarke GM (eds) Genetics, Demography and Viability of Fragmented Populations. Cambridge University Press: Cambridge. pp 149-172
51. Stankowski S, Johnson MS. (2014). Biogeographic discordance of molecular phylogenetic and phenotypic variation in a continental archipelago radiation of land snails. BMC Evol Biol 14: 2
52. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P. (2004). MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538
53. Wang JT, Wang PX. (1980). The relationship between sea level rising and climate change in East China. Chinese J Geographical Sci 35: 299-313. [in Chinese with English abstract]
54. Wang S, Zhu W, Gao X, Li X, Yan S, Liu X, et al. (2014). Population size and time since island isolation determine genetic diversity loss in insular frog populations. Mol Ecol 23: 637-648
55. Wang Y, Zhang J, Feelfy KJ, Jiang P, Ding P. (2009). Life-history traits associated with fragmentation vulnerability of lizards in the Thousand-Island Lake, China. Anim Conser 12: 329-337
56. Weir BS, Cockerham CC. (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370
57. White TA, Searle JB. (2007). Genetic diversity and population size: island populations of the common shrew, Sorex araneus. Mol Ecol 16: 2005-2016
58. Whittaker RJ, Fernández-Palacios JM. (2007). Island Biogeography: Ecology, Evolution, and Conservation. Oxford University Press: Oxford, UK
59. Wilson GA, Rannala B. (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191
60. Wright S. (1978). Evolution and the Genetics of Populations: Variability Within and Among Natural Populations. University of Chicago Press: Chicago, USA
61. Young A, Boyle T, Brown A. (1996). The population genetic consequences of habitat fragmentation for plants. Trends Ecol Evol 11: 413-418
62. Yuan N, Comes HP, Mao YR, Qi XS, Qiu YX. (2012). Genetic effects of recent habitat fragmentation in the Thousand-Island Lake region of southeast China on the distylous herb Hedyotis chrysotricha (Rubiaceae). Am J Bot 99: 1715-1725
63. Zhang X, Pan D, Chen J, Chen P, Jia Y. (2013). Evaluation of land ecological environment in Zhoushan Islands by remotely sensed impervious surfaces. In: Neale CMU, Maltese A (eds) Remote Sensing for Agriculture, Ecosystems, and Hydrology XV. International Society for Optics and Photonics: Dresden, Germany, pp 88871F
64. Zhang ZY, Chang HT, Endress PK. (2003). Hamamelidaceae. In: Wu ZY, , Raven PH (eds) Flora of China vol. 9, Science Press and Missouri Botanical Garden Press: Beijing, China and St Louis, MO, USA, pp 18-42
65. Zhou JL. (1987). The Comprehensive Agriculture Programme of Zhoushan City. Zhejiang Peoples Press: Hangzhou, China