Historical fragmentation of islands and genetic drift in populations of Galápagos lava lizards (Microlophus albemarlensis complex)

Molecular Ecology

Volumn 17, Issue 5, 2008, Pages 1224-1237

  Jordan, M A ^a   Snell, H L ^b  

^a PURDUE UNIVERSITY FORT WAYNE   (United States)

^b UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

Gal pagos Islands; Genetic differentiation; Genetic diversity; Microsatellite; Pleistocene; Sea level

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; ECUADOR; GENETIC DRIFT; GENETIC VARIABILITY; GENETICS; GENOME; GEOGRAPHY; HETEROZYGOTE; LIZARD; POPULATION DYNAMICS; PRINCIPAL COMPONENT ANALYSIS; SAMPLE SIZE;

ALLELES; ANIMALS; ECUADOR; GENETIC DRIFT; GENOME; GEOGRAPHY; HETEROZYGOTE; LIZARDS; MICROSATELLITE REPEATS; POPULATION DYNAMICS; PRINCIPAL COMPONENT ANALYSIS; SAMPLE SIZE; VARIATION (GENETICS);

MICROLOPHUS ALBEMARLENSIS; SQUAMATA;

EID: 39749138756     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2007.03658.x     Document Type: Article

References (92)

1. Allendorf FW (1986) Genetic drift and the loss of alleles versus heterozygosity. Zoo Biology, 5, 181 190.
2. Baldwin BG, Robichaux RH (1995) Historical biogeography and ecology of the Hawaiian silversword alliance. In : Hawaiian Biogeography (eds Wagner WW, Funk VA pp. 259 287. Smithsonian Institution Press, Washington, DC.
3. Balloux F, Goudet J (2002) Statistical properties of population differentiation estimators under stepwise mutation in a finite island model. Molecular Ecology, 11, 771 783.
4. Balloux F, Moulin-Lugon N (2002) The estimation of population differentiation with microsatellite markers. Molecular Ecology, 11, 155 165.
5. Balloux F, Brunner H, Lugon-Moulin N, Hausser J, Goudet J (2000) Microsatellites can be misleading: an empirical and simulation study. Evolution, 54, 1414 1422.
6. 14C timescale over the past 30 000 years using U-Th ages from Barbados corals. Nature, 345, 405 410.
7. Beheregaray LB, Gibbs JP, Havill N et al 2004) Giant tortoises are not so slow: rapid diversification and biogeographic consensus in the Galápagos. Proceedings of the National Academy of Sciences, USA, 101, 6514 6519.
8. Benavides E, Baum R, McClellan D, Sites JW Jr 2007) Molecular phylogenetics of the lizard genus Microlophus (Squamata: Tropiduridae): aligning and retrieving indel signal from nuclear introns. Systematic Biology, 56, 776 797.
9. Boag PT, Grant PR (1984) Darwin's finches (Geospiza) on Isla Daphne Major, Galapagos: breeding and feeding ecology in a climatically variable environment. Ecological Monographs, 54, 463 489.
10. Brownstein MJ, Carpten JD, Smith JR (1996) Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. BioTechniques, 20, 1004 1010.
11. Caccone A, Gentile G, Gibbs JP et al 2002) Phylogeography and history of giant Galápagos tortoises. Evolution, 56, 2052 2066.
12. Calsbeek R, Smith TB (2003) Ocean currents mediate evolution in island lizards. Nature, 426, 552 555.
13. Carpenter CC (1966) Comparative behavior of the Galápagos lava lizards (Tropidurus). In : The Galápagos: Proceedings of the Symposia of the Galápagos International Science Project (ed. Bowman RI pp. 269 273. University of California Press, Berkeley, CA.
14. Censky EJ, Hodge K, Dudley J (1998) Over water dispersal of lizards due to hurricanes. Nature, 395, 556 556.
15. Chakraborty R, Nei M (1977) Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model. Evolution, 31, 347 356.
16. Chapuis M, Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution, 24, 621 631.
17. Christie DM, Duncan RA, McBirney AR et al 1992) Drowned islands downstream of the Galápagos hotspot imply extended speciation times. Nature, 355, 246 248.
18. Ciofi C, Beaumont MA, Swingland IR, Bruford MW (1999) Genetic divergence and units for conservation in the Komodo dragon Varanus komodoensis. Proceedings of the Royal Society of London, Series B: Biological Sciences, 266, 2269 2274.
19. Ciofi C, Wilson GA, Beherengary LB et al 2006) Phylogeographic history and gene flow among giant Galápagos tortoises on southern Isabela Island. Genetics, 172, 1727 1744.
20. Clegg SM, Degnan SM, Moritz C et al 2002) Microevolution in island forms: the roles of drift and directional selection in morphological divergence of a passerine bird. Evolution, 56, 2090 2099.
21. Corander J, Marttinen P (2006) Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology, 15, 2833 2843.
22. Corander J, Waldmann P, Sillanpää MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367 374.
23. Dempster AP, Laird NM, Rubin DB (1977) Maximum likelihood from incomplete data via the EM algorithm. Journal of the Royal Statistical Society, Series B, 39, 1 38.
24. DeWoody JA, Avise JC (2000) Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish Biology, 56, 461 473.
25. Dieringer D, Schlötterer C (2003) Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Molecular Ecology Notes, 3, 167 169.
26. Emerson BC (2002) Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and process. Molecular Ecology, 11, 951 966.
27. Estoup A, Jarne P, Cornuet JM (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetic analysis. Molecular Ecology, 11, 1591 1604.
28. Fairbanks RG (1989) A 17 000 - year glacio-eustatic sea level record: influence of glacial melting rates on the Younger Dryas event and deep-ocean circulation. Nature, 342, 637 642.
29. Funk DJ, Omland KE (2003) Species-level paraphyly and polyphyly. Annual Review of Ecology and Systematics, 34, 397 423.
30. Garant D, Forde SE, Hendry AP (2007) The multifarious effects of dispersal and gene flow on contemporary adaptation. Functional Ecology, 21, 434 443.
31. Geist D (1996) On the emergence and submergence of the Galápagos Islands. Noticias de Galápagos, 56, 5 9.
32. Goodman SJ, Tamate HB, Wilson R et al 2001) Bottlenecks, drift, and differentiation: the population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelago. Molecular Ecology, 10, 1357 1370.
33. Goudet J (1999) PCA-GEN for Windows. University of Lausanne, Lausanne, Switzerland.
34. Grant PR (1986) Ecology and Evolution of Darwin's Finches. Princeton University Press, Princeton, NJ.
35. Grant PR (1998) Evolution on Islands, Oxford University Press, Oxford, UK.
36. Grant PR (2001) Reconstructing the evolution of birds on islands: 100 years of research. Oikos, 92, 385 403.
37. Grant PR, Grant BR (1998) Speciation and hybridization of birds on islands. In : Evolution on Islands (ed. Grant PR pp. 142 162. Oxford University Press, Oxford, UK.
38. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics, 48, 361 372.
39. Harmon LJ, Gibson R (2006) Multivariate phenotypic evolution among island and mainland populations of the ornate day gecko, Phelsuma ornata. Evolution, 60, 2622 2632.
40. Hedrick PW (1999) Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313 318.
41. Hedrick PW (2005) A standardized genetic differentiation measure. Evolution, 59, 1633 1638.
42. Holmgren M, Scheffer M, Ezcurra E, Gutiérrez JR, Mohren GMJ (2001) El Nino effects on the dynamics of terrestrial ecosystems. Trends in Ecology & Evolution, 16, 89 94.
43. Hutchison DW, Templeton AR (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 1898 1914.
44. Jordan MA, Hammond RL, Snell HL, Snell HM, Jordan WC (2002) Isolation and characterization of microsatellite loci from Galápagos lava lizards (Microlophus spp.). Molecular Ecology Notes, 2, 349 351.
45. Jordan MA, Snell HL, Snell HM, Jordan WC (2005) Phenotypic divergence despite high levels of gene flow in Galápagos lava lizards (Microlophus albemarlensis). Molecular Ecology, 14, 859 867.
46. Juan C, Emerson BC, Oromí P, Hewitt GM (2000) Colonization and diversification: towards a phylogeographic synthesis for the Canary Islands. Trends in Ecology & Evolution, 15, 104 109.
47. Kizirian D, Trager A, Donnelly MA, Wright JW (2004) Evolution of Galapagos island lava lizards (Iguana: Tropiduridae: Microlophus). Molecular Phylogenetics and Evolution, 32, 761 769.
48. Lambeck K, Chappell J (2001) Sea level change through the last glacial cycle. Science, 292, 679 686.
49. Lopez TJ, Hauselman ED, Maxson LR, Wright JW (1992) Preliminary analysis of phylogenetic relationships among Galapagos Island lizards of the genus Tropidurus. Amphibia-Reptilia, 13, 327 339.
50. Losos JB, Jackman TR, Larson A, de Queiroz K, Rodriguez-Schettino L (1998) Contingency and determinism in replicated adaptive radiations of island lizards. Science, 279, 2115 2118.
51. MacAvoy ES, McGibbon LM, Sainsbury JP et al 2007) Genetic variation in island populations of tuatara (Sphenodon spp.) inferred from microsatellite markers. Conservation Genetics, 8, 305 318.
52. Malone CL, Knapp CR, Taylor JF, Davis SK (2003) Genetic consequences of Pleistocene fragmentation: isolation, drift, and loss of diversity in rock iguanas (Cyclura). Conservation Genetics, 4, 1 15.
53. Mayr E (1954) Change of genetic environment and evolution. In : Evolution as a Process (eds Huxley J, Hardy AC, Ford EB pp. 157 180. Allen & Unwin, London, UK.
54. Meirmans PG (2006) Using the amova framework to estimate a standardized genetic differentiation measure. Evolution, 60, 2399 2402.
55. Miles DB, Snell HL, Snell HM (2001) Intrapopulation variation in endurance of Galápagos lava lizards (Microlophus albemarlensis): evidence for an interaction between natural and sexual selection. Evolutionary Ecology Research, 3, 795 804.
56. Morando M, Avila LJ, Baker J, Sites JW Jr. (2004) Phylogeny and phylogeography of the Liolaemus darwinii complex (Squamata: Liolaemidae): evidence for introgression and incomplete lineage sorting. Evolution, 58, 842 861.
57. Neff BD, Gross MR (2001) Microsatellite evolution in vertebrates: inferences from AC dinucleotide repeats. Evolution, 55, 1717 1733.
58. Nei M (1978) Estimation of average heterozygosity and genetic distance from a number of individuals. Genetics, 89, 538 590.
59. Nichols R (2001) Gene trees and species trees are not the same. Trends in Ecology & Evolution, 7, 358 364.
60. Nichols RA, Freeman KLM (2004) Using molecular markers with high mutation rates to obtain estimates of relative population size and to distinguish the effects of gene flow and mutation: a demonstration using data from endemic Mauritian skinks. Molecular Ecology, 13, 775 787.
61. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535 538.
62. Parent CE, Crespi BJ (2006) Sequential colonization and diversification of Galápagos endemic land snail genus Bulimulus (Gastropoda, Stylommatophora). Evolution, 60, 2311 2328.
63. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288 295.
64. Petren K, Grant PR, Grant BR, Keller LF (2005) Comparative landscape genetics and the adaptive radiation of Darwin's finches: the role of peripheral isolation. Molecular Ecology, 14, 2943 2957.
65. Rassmann K, Tautz D, Trillmich F, Gliddon C (1997) The microevolution of the Galápagos marine iguana Amblyrhynchus cristatus assessed by nuclear and mitochondrial genetic analyses. Molecular Ecology, 6, 437 452.
66. Raymond M, Rousset F (1995) genepop (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248 249.
67. Rice WR (1989) Analysing tables of statistical tests. Evolution, 43, 223 225.
68. Rice W, Hostert E (1993) Laboratory experiments on speciation: what have we learned in 40 years? Evolution, 47, 1637 1653.
69. Rodbell DT, Seltzer GO, Anderson DM et al 1999) An ∼15 000-year record of El Niño-driven alluviation in southwestern Ecuador. Science, 283, 516 520.
70. Rodda GH, Perry G, Rondeau RJ, Lazell J (2001) The densest terrestrial vertebrate. Journal of Tropical Ecology, 17, 331 338.
71. Roderick GK, Gillespie RG (1998) Speciation and phylogeography of Hawaiian terrestrial arthropods. Molecular Ecology, 7, 519 531.
72. Schluter D (1984) Body size, prey size, and herbivory in the Galápagos lava lizard, Tropidurus. Oikos, 43, 291 300.
73. Schoener A, Schoener TW (1984) Experiments on dispersal: short-term floatation of insular anoles, with a review of similar abilities in other terrestrial annimals. Oecologia, 63, 289 294.
74. Schoener TW, Spiller D, Losos JB (2001) Natural restoration of the species-area relation for a lizard after a hurricane. Science, 294, 1525 1528.
75. Simpson BB (1974) Glacial migrations of plants: island biogeographical evidence. Science, 185, 698 700.
76. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 13, 457 462.
77. Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systematic Zoology, 35, 627 632.
78. Snell HL, Snell HM, Tracy CR (1984) Variation among populations of Galapagos land iguanas (Conolophus): contrasts of phylogeny and ecology. Biological Journal of the Linnean Society, 21, 185 207.
79. Snell HL, Jennings RD, Snell HM, Harcourt S (1988) Intrapopulation variation in predator-avoidance performance of Galápagos lava lizards: the interaction of sexual and natural selection. Evolutionary Ecology, 2, 353 369.
80. Snell HM, Stone PA, Snell HL (1996) A summary of geographical characteristics of the Galápagos Islands. Journal of Biogeography, 23, 619 624.
81. SPSS (2006) SPSS for Windows. SPSS Inc., Chicago, IL.
82. Stone PA, Snell HL, Snell HM (1994) Behavioral diversity as biological diversity: introduced cats and lava lizard wariness. Conservation Biology, 8, 569 573.
83. Stone PA, Snell HL, Snell HM (2002) Island biogeography of morphology and social behavior in the lava lizards of the Galápagos Islands. In : Lizard Social Behavior (eds Fox S, McCoy JK, Baird TA pp. 190 242. Johns Hopkins University Press, Baltimore, MD.
84. Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proceedings of the National Academy of Sciences, USA, 100, 9440 9445.
85. Templeton AR (1998) Nested clade analysis of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
86. Templeton AR, Robertson RJ, Brisson J, Strasbury J (2001) Disrupting evolutionary processes: the effect of habitat fragmentation on collared lizards in the Missouri Ozarks. Proceedings of the National Academy of Sciences, USA, 98, 5426 5432.
87. Thorpe RS, Malhotra A (1996) Molecular and morphological evolution within small islands. Philosophical Transactions of the Royal Society of London, Series B: Biology Sciences, 351, 815 822.
88. Van Denburgh J, Slevin JR (1913) Expedition of the California Academy of Sciences to the Galapagos Islands, 1905-06, IX, The Galapagoan lizards of the Genus Tropidurus; with notes on the Iguanas of the Genera Conolophus and Amblyrhynchus. Proceedings of the California Academy of Sciences, Fourth Series, 2, 133 202.
89. Verhoeven KJF, Simonsen KL, McIntyre LM (2005) Implementing false discovery rate control: increasing your power. Oikos, 108, 643 647.
90. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
91. Wikelski M, Trillmich F (1997) Body size and sexual size dimorphism in marine iguanas fluctuate as a result of opposing natural and sexual selection: an island comparison. Evolution, 51, 922 936.
92. Wright JW (1983) The evolution and biogeography of the lizards of the Galapagos archipelago: evolutionary genetics of Phyllodactylus and Tropidurus populations. In : Patterns of Evolution in Galapagos Organisms (eds Bowman RI, Berson M, Leviton AE pp. 123 155. Pacific Division, AAAS, San Francisco, CA.