Evolutionary history of Scinax treefrogs on land-bridge islands in south-eastern Brazil

Journal of Biogeography

Volumn 39, Issue 9, 2012, Pages 1733-1742

  Bell, Rayna C ^a   Brasileiro, Cinthia A ^b,c   Haddad, Célio F B ^c   Zamudio, Kelly R ^a  

^a Department of Obstetrics Gynecology   (United States)

^b FEDERAL UNIVERSITY OF SÃO PAULO   (Brazil)

^c SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

Anura; Atlantic coastal forest; Frogs; Genetic drift; Hylidae; Island biogeography; Isolation; Scinax faivovichi; Scinax peixotoi; Scinax perpusillus

Indexed keywords

ALLELE; FROG; GENETIC DIFFERENTIATION; GENETIC DRIFT; GENETIC MARKER; INBREEDING; ISLAND BIOGEOGRAPHY; ISOLATED POPULATION; LAND BRIDGE; MORPHOLOGY; PLEISTOCENE; POPULATION SIZE; POPULATION STRUCTURE; REFUGIUM; RELATEDNESS; SEA LEVEL; SPECIATION (BIOLOGY);

ATLANTIC FOREST; BRAZIL; SAO PAULO [BRAZIL]; SAO PAULO [SAO PAULO (STT)];

ANURA; HYLA; HYLIDAE; SCINAX; SCINAX PERPUSILLUS;

EID: 84865189867     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2012.02708.x     Document Type: Article

References (62)

1. Amaral, A. (1922) Contribuição para o conhecimento dos ofídios do Brazil. Parte I. Quatro novas espécies de serpentes brasileiras. Anexo das Memórias do Instituto de Butantan, São Paulo Seção de Ofiologia, 1, 1-88.
2. Barton, N.H. (1998) Natural selection and random genetic drift as causes of evolution on islands. Evolution on islands (ed. by P.R. Grant ), pp. 102-123. Oxford University Press, Oxford.
3. Beerli, P., Hotz, H. & Uzzell, T. (1996) Geologically dated sea barriers calibrate a protein clock for Aegean water frogs. Evolution, 50, 1676-1687.
4. Bittkau, C. & Comes, H.P. (2005) Evolutionary processes in a continental island system: molecular phylogeography of the Aegean Nigella arvensis alliance (Ranunculaceae) inferred from chloroplast DNA. Molecular Ecology, 14, 4065-4083.
5. Brasileiro, C.A., Oyamaguchi, H.M. & Haddad, C.F.B. (2007a) A new island species of Scinax (Anura; Hylidae) from southeastern Brazil. Journal of Herpetology, 41, 271-275.
6. Brasileiro, C.A., Haddad, C.F.B., Sawaya, R.J. & Martins, M. (2007b) A new and threatened species of Scinax (Anura: Hylidae) from Queimada Grande Island, southeastern Brazil. Zootaxa, 1391, 47-55.
7. Brasileiro, C.A., Haddad, C.F.B., Sawaya, R.J. & Sazima, I. (2007c) A new and threatened island-dwelling species of Cycloramphus (Anura: Cycloramphidae) from southeastern Brazil. Herpetologica, 63, 501-510.
8. Carnaval, A.C., Moritz, C., Hickerson, M., Haddad, C.F.B. & Rodrigues, M. (2009) Stability predicts diversity in the Brazilian Atlantic Forest hotspot. Science, 323, 785-789.
9. Carson, H.L. & Templeton, A.R. (1984) Genetic revolutions in relation to speciation phenomena: the founding of new populations. Annual Review of Ecology and Systematics, 15, 97-131.
10. Chakraborty, R. & Nei, M. (1977) Bottleneck effects on average heterozygosity and genetic distance with the stepwise mutation model. Evolution, 31, 347-356.
11. Clegg, S.M., Degnan, S.M., Moritz, C., Estoup, A., Kikkawa, J. & Owens, I.P. (2002) Microevolution in island forms: the roles of drift and directional selection in morphological divergence of a passerine bird. Evolution, 56, 2090-2099.
12. Cogo, J.C., Prado-Franceschi, J.P., Cruz-Hofling, M.A., Corrado, A.P. & Rodrigues-Simoni, M.A. (1993) Effect of Bothrops insularis venom on the mouse and chick nerve-muscle preparation. Toxicon, 31, 1237-1247.
13. Duglosh, K.M. & Parker, I.M. (2008) Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Molecular Ecology, 17, 431-449.
14. Duryea, M.C., Brasileiro, C.A. & Zamudio, K.R. (2009) Characterization of microsatellite markers for snouted treefrogs in the Scinax perpusillus species group (Anura, Hylidae). Conservation Genetics, 10, 1053-1056.
15. Emerson, B.C. (2002) Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and process. Molecular Ecology, 11, 951-966.
16. Evanno, G., Regnaut, S. & Goudet, J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14, 2611-2620.
17. Excoffier, L., Laval, G. & Schneider, S. (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 47-50.
18. Faivovich, J., Gasparini, J.L. & Haddad, C.F.B. (2010) A new species of the Scinax perpusillus group (Anura: Hylidae) from Espírito Santo, Brazil. Copeia, 1, 97-102.
19. Fitzpatrick, S.W., Brasileiro, C.A., Haddad, C.F.B. & Zamudio, K.R. (2009) Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability. Molecular Ecology, 18, 2877-2896.
20. Frankham, R. (1997) Do island populations have less genetic variation than mainland populations? Heredity, 78, 311-327.
21. Frost, D.R. (2011) Amphibian species of the world 5.5, an online reference. American Museum of Natural History, New York. Available at: http://research.amnh.org/vz/herpetology/amphibia/ (accessed 31 January 2011).
22. Gavrilets, S. & Vose, A. (2005) Dynamic patterns of adaptive radiation. Proceedings of the National Academy of Sciences USA, 50, 18040-18045.
23. Goodman, S.J., Tamate, H.B., Wilson, R., Nagata, J., Tatsuzawa, S., Swanson, G.M., Pemberton, J.M. & McCullough, D.R. (2001) Bottlenecks, drift and differentiation: the population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelago. Molecular Ecology, 10, 1357-1370.
24. Grazziotin, F.G., Monzel, M., Echeverrigaray, S. & Bonatto, S.L. (2006) Phylogeography of the Bothrops jaracara complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest. Molecular Ecology, 15, 3969-3982.
25. Hedrick, P.W. (1999) Highly variable loci and their interpretation in evolution and conservation. Evolution, 53, 313-318.
26. Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
27. Hutchison, D.W. & Templeton, A.R. (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 1898-1914.
28. Jaenike, J.R. (1973) A steady-state model of genetic polymorphisms on islands. The American Naturalist, 107, 793-795.
29. Jordan, M.A. & Snell, H.L. (2008) Historical fragmentation of lizards and genetic drift in populations of Galapagos lava lizards (Microlophus albemarlensis complex). Molecular Ecology, 17, 1224-1237.
30. Kalinowski, S.T. (2005) hp-rare 1.0: a computer program for performing rarefaction on measures of allelic richness. Molecular Ecology Notes, 5, 187-189.
31. Larkin, M.A., Blackshields, G., Brown, N.P., Chenna, R., McGettigan, P.A., McWilliam, H., Valentin, F., Wallace, I.M., Wilm, A., Lopez, R., Thompson, J.D., Gibson, T.J. & Higgins, D.G. (2007) Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947-2948.
32. Losos, J.B. & Ricklefs, R.E. (2009) Adaptation and diversification on islands. Nature, 457, 830-836.
33. Lovette, I.J., Bermingham, E. & Ricklefs, R.E. (2002) Clade-specific morphological diversification and adaptive radiation in Hawaiian songbirds. Proceedings of the Royal Society B: Biological Sciences, 269, 37-42.
34. Lutz, B. (1973) New Brazilian forms of Hyla. Boletim do Museu Nacional do Rio de Janeiro (Zoology), 288, 1-7.
35. Mantel, N. (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209-220.
36. Marques, O.A.V., Martins, M. & Sazima, I. (2002) A new insular species of pitviper from Brazil, with comments on evolutionary biology and conservation of the Bothrops jararaca group (Serpentes: Viperidae). Herpetologica, 58, 303-312.
37. Martins, M., Araujo, M.S., Sawaya, R.J. & Nunes, R. (2001) Diversity and evolution of macrohabitat use, body size and morphology in a monophyletic group of Neotropical pitvipers (Bothrops). Journal of Zoology, 254, 529-538.
38. Mayr, E. (1954) Change of genetic environment and evolution. Evolution as a process (ed. by J. Huxley, A.C. Hardy and E.B. Ford ), pp. 157-180. Allen & Unwin, London.
39. Measey, G.J., Vences, M., Drewes, R.C., Chiari, Y., Melo, M. & Bourles, B. (2007) Freshwater paths across the ocean: molecular phylogeny of the frog Ptychadena newtoni gives insights into amphibian colonization of oceanic islands. Journal of Biogeography, 34, 7-20.
40. Nei, M., Maruyama, T. & Chakraborty, R. (1975) Bottleneck effect and genetic variability in populations. Evolution, 29, 1-10.
41. Nylander, J.A. (2004) MrModeltest v. 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
42. van Oosterhaut, C., Hutchinson, W.F., Wills, D.P.M. & Shipley, P. (2004) micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535-538.
43. Palumbi, S., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) The simple fool's guide to PCR. Version 2. University of Hawaii Zoology Department, Honolulu, HI.
44. Peakall, R. & Smouse, P.E. (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
45. Peixoto, O.L. (1987) Caracterização do grupo ''perpusillus'' e revalidação da posição taxonômica de Ololygon perpusilla perpusilla e Ololygon perpusilla v-signata (Amphibia, Anura, Hylidae). Arquivos da Universidade Federal Rural do Rio de Janeiro, 10, 37-49.
46. Powell, J.R. (1978) The founder-flush speciation theory: an experimental approach. Evolution, 32, 465-74.
47. Pritchard, J.K., Stephens, M. & Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
48. Queller, D.C. & Goodnight, K.F. (1989) Estimating relatedness using genetic markers. Evolution, 43, 258-275.
49. R Development Core Team (2011) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available at: http://www.R-project.org/.
50. Raymond, M. & Rousset, F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
51. Rojas-Soto, O.R., Westberg, M., Navarro-Sigüenza, A.G. & Zink, R.M. (2010) Genetic and ecological differentiation in the endemic avifauna of Tiburón Island. Journal of Avian Biology, 41, 398-406.
52. Schluter, D. (1988) Character displacement and the adaptive divergence of finches on islands and continents. The American Naturalist, 131, 799-824.
53. da Silva, H.R. & Alves-Silva, R. (2011) A new bromeligenous species of the Scinax perpusillus group from the hills of the State of Rio de Janeiro, Brazil (Anura, Hylidae). Zootaxa, 3043, 54-68.
54. Souza, C.R.G. & Souza, A.P. (2004) Geologia e geomorfologia da área da Estação Ecológica Juréia-Itatins. Estação Ecológica Juréia-Itatins: ambiente físco, flora e fauna (ed. by O.A.V. Marques and W. Duleba ), pp. 16-33. Holos, Ribeirão Preto, São Paulo.
55. Suguio, K., Angulo, R.J., Carvalho, A.M., Corrêa, A.M., Tomazelli, L.J., Willwock, J.A. & Vital, H. (2005) Paleoníveis do mar e paleolinhas de costa. Quaternário do Brasil (ed. by C.R.G. Souza, K. Suguio, A.M.S. Oliveira and P.E. Oliveira ), pp. 114-129. Associação Brasileira de Estudos do Quaternário, São Paulo.
56. Tamura, K. & Nei, M. (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512-526.
57. Thomé, M.T.C., Zamudio, K.R., Giovanelli, J.G.R., Haddad, C.F.B., Baldissera, F.A. & Alexandrino, J. (2010) Phylogeography of endemic toads and post-Pliocene persistence of the Brazilian Atlantic Forest. Molecular Phylogenetics and Evolution, 55, 1018-1031.
58. Van Vuren, D.H. & Bakker, V.J. (2010) Rapid morphological change in an insular population of feral sheep. Journal of Zoology, 277, 221-231.
59. Velland, M. (2003) Island biogeography of genes and species. The American Naturalist, 162, 358-365.
60. Velo-Antón, G., Zamudio, K.R. & Cordero-Rivera, A. (2011) Genetic drift and rapid evolution of viviparity in insular fire salamanders (Salamandra salamandra). Heredity (in press) doi:10.1038/hdy.2011.91.
61. Wayne, R.K., George, S.B., Gilbert, D., Collins, P.W., Kovach, S.D., Girman, D. & Lehman, N. (1991) A morphologic and genetic study of the Island Fox, Urocyon littoralis. Evolution, 45, 1849-1868.
62. Wright, S. (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.