Time-resolved fluorescence anisotropy

Flim Microscopy in Biology and Medicine

Volumn , Issue , 2009, Pages 245-288

  Vogel, Steven S ^a   Thaler, Christopher ^a   Blank, Paul S ^b   Koushik, Srinagesh V ^a  

^a NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM   (United States)

^b EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84929047634     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (66)

1. Austin, R. H., Chan, S. S., and Jovin, T. M. 1979. Rotational diffusion of cell surface components by time-resolved phosphorescence anisotropy. Proceedings of the National Academy of Sciences USA 76:5650-5654.
2. Axelrod, D. 1979. Carbocyanine dye orientation in red cell membrane studied by microscopic fluorescence polarization. Biophysical Journal 26:557-573.
3. Axelrod, D. 1989. Fluorescence polarization microscopy. Methods in Cell Biology 30:333-352.
4. Bader, A. N., Hofman, E. G., van Bergen en Henegouwen, P. M. P., and Gerritsen, H. C. 2007. Imaging of protein cluster size by means of confocal time-gated fluorescence anisotropy microscopy. Optics Express 15:6934-6945.
5. Bastiaens, P. I., and Squire, A. 1999. Fluorescence lifetime imaging microscopy: Spatial resolution of biochemical processes in the cell. Trends in Cell Biology 9:48-52.
6. Becker, W. 2005. Advanced time-correlated single photon counting techniques. Berlin: Springer.
7. Beechem, J. M., Knutson, J. R., and Brand, L. 1986. Global analysis of multiple dye fluorescence anisotropy experiments on proteins. Biochemical Society Transactions 14:832-835.
8. Berberan-Santos, M. N., and Valeur, B. 1991. Fluorescence depolarization by electronic energy transfer in donor-acceptor pairs of like and unlike chromophores. Journal of Chemical Physics 95:8048-8054.
9. Blackman, S. M., Cobb, C. E., Beth, A. H., and Piston, D. W. 1996. The orientation of eosin-5-maleimide on human erythrocyte band 3 measured by fluorescence polarization microscopy. Biophysical Journal 71:194-208.
10. Blackman, S. M., Piston, D. W., and Beth, A. H. 1998. Oligomeric state of human erythrocyte band 3 measured by fluorescence resonance energy homotransfer. Biophysical Journal 75:1117-1130.
11. Callis, P. R. 1997. Two-photon-induced fluorescence. Annual Review of Physical Chemistry 48:271-297.
12. Cantor, C. R., and Schimmel, P. R. 1980. Biophysical chemistry part II: Techniques for the study of biological structure and function. San Francisco: W. H. Freeman & Co.
13. Clayton, A. H., Hanley, Q. S., Arndt-Jovin, D. J., Subramaniam, V., and Jovin, T. M. 2002. Dynamic fluorescence anisotropy imaging microscopy in the frequency domain (rFLIM). Biophysical Journal 83:1631-1649.
14. Clegg, R. M. 1996. Fluorescence resonance energy transfer. In Fluorescence imaging spectroscopy and microscopy, ed. X. F. Wang and B. Herman, 137, 179-252. Chichester, England: John Wiley & Sons, Inc.
15. Clegg, R. M., Murchie, A. I., and Lilley, D. M. 1994. The solution structure of the four-way DNA junction at low-salt conditions: A fluorescence resonance energy transfer analysis. Biophysical Journal 66:99-109.
16. Dale, R. E., and Eisinger, J. 1976. Intramolecular energy transfer and molecular conformation. Proceedings of the National Academy of Sciences USA 73:271-273.
17. Dale, R. E., Eisinger, J., and Blumberg, W. E. 1979. The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer. Biophysical Journal 26:161-193.
18. Denk, W., Strickler, J. H., and Webb, W. W. 1990. Two-photon laser scanning fluorescence microscopy. Science 248:73-76.
19. Dill, K. A., and Bromberg, S. 2003. Molecular driving forces. New York: Garland Science.
20. Dixit, B. P., Waring, A. J., Wells, K. O., III, Wong, P. S., Woodrow, G. V., III, and Vanderkooi, J. M. 1982. Rotational motion of cytochrome c derivatives bound to membranes measured by fluorescence and phosphorescence anisotropy. European Journal of Biochemistry 126:1-9.
21. Eads, T. M., Thomas, D. D., and Austin, R. H. 1984. Microsecond rotational motions of eosin-labeled myosin measured by time-resolved anisotropy of absorption and phosphorescence. Journal of Molecular Biology 179:55-81.
22. Eisinger, J., and Dale, R. E. 1974. Letter: Interpretation of intramolecular energy transfer experiments. Journal of Molecular Biology 84:643-647.
23. Förster, T. 1948. Intermolecular energy migration and fluorescence. Annalen der Physik 2:55-75.
24. Gadella, T. W. J., Jovin, T. M., and Clegg, R. M. 1993. Fluorescence lifetime imaging microscopy (FLIM): Spatial resolution of microstructures on the nanosecond time scale. Biophysical Chemistry 48:221-239.
25. Gautier, I., Tramier, M., Durieux, C., et al. 2001. Homo-FRET microscopy in living cells to measure monomer-dimer transition of GFP-tagged proteins. Biophysical Journal 80:3000-3008.
26. Hecht, S., Shlaer, S., and Pirenne, M. H. 1941. Energy at the threshold of vision. Science 93:585-587.
27. Heikal, A. A., Hess, S. T., Baird, G. S., Tsien, R. Y., and Webb, W. W. 2000. Molecular spectroscopy and dynamics of intrinsically fluorescent proteins: coral red (dsRed) and yellow (Citrine). Proceedings of the National Academy of Sciences USA 97:11996-20001.
28. Hess, S. T., Sheets, E. D., Wagenknecht-Wiesner, A., and Heikal, A. A. 2003. Quantitative analysis of the fluorescence properties of intrinsically fluorescent proteins in living cells. Biophysical Journal 85:2566-2580.
29. Inoue, S., and Spring, K. R. 1997. Video microscopy: The fundamentals. New York: Plenum Press.
30. Jablonski, A. 1970. Anisotropy of fluorescence of molecules excited by excitation transfer. Acta Physiologica Pol A 38:453-458.
31. Jameson, D. M., Croney, J. C., and Moens, P. D. 2003. Fluorescence: Basic concepts, practical aspects, and some anecdotes. Methods in Enzymology 360:1-43.
32. Jameson, D. M., and Mocz, G. 2005. Fluorescence polarization/anisotropy approaches to study protein-ligand interactions: Effects of errors and uncertainties. Methods in Molecular Biology 305:301-322.
33. Jares-Erijman, E. A., and Jovin, T. M. 2003. FRET imaging. Nature Biotechnology 21:1387-1395.
34. Knutson, J. R., Beechem, J. M., and Brand, L. 1983. Simultaneous analysis of multiple fluorescence decay curves: A global approach. Chemistry and Physics Letters 102:501-507.
35. Koushik, S. V., Chen, H., Thaler, C., Puhl, H. L., III, and Vogel, S. S. 2006. Cerulean, Venus, and VenusY67C FRET reference standards. Biophysical Journal 91:L99-L101.
36. Koushik, S. V., and Vogel, S. S. 2008. Energy migration alters the fluorescence lifetime of Cerulean: Implications for fluorescence lifetime imaging Forster resonance energy transfer measurements. Journal of Biomedical Optics 13:031204.
37. Lakowicz, J. R. 1999. Principles of fluorescence spectroscopy. New York: Kluwer Academic/Plenum Publishers.
38. Lakowicz, J. R., Gryczynski, I., Gryczynski, Z., Danielsen, E., and Wirth, M. J. 1992. Time-resolved fluorescence intensity and anisotropy decays of 2,5-diphenyloxzole by two-photon excitation and frequency-domain fluorometry. Journal of Physical Chemistry 96:3000-3006.
39. Lakowicz, J. R., Szmacinski, H., Nowaczyk, K., Berndt, K. W., and Johnson, M. 1992. Fluorescence lifetime imaging. Analytical Biochemistry 202:316-330.
40. Marushchak, D., and Johansson, L. B. 2005. On the quantitative treatment of donor-donor energy migration in regularly aggregated proteins. Journal of Fluorescence 15:797-803.
41. McClain, W. M. 1972. Polarization dependence of three-photon phenomena for randomly oriented molecules. Journal of Chemical Physics 57:2264-2272.
42. Nagai, T., Ibata, K., Park, E. S., Kubota, M., Mikoshiba, K., and Miyawaki, A. 2002. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nature Biotechnology 20:87-90.
43. Periasamy, A., and Day, R. N., eds. 2005. Molecular imaging: FRET microscopy and spectroscopy. New York: Oxford University Press.
44. Perrin, F. 1926. Polarization de la lumiere de fluorescence: Vie moyenne des molecules dans l’etat excite. Journal de Physique et le Radium 5 7:390-401.
45. Piston, D. W., and Rizzo, M. A. 2008. FRET by fluorescence polarization microscopy. Methods in Cell Biology 85:415-430.
46. Rao, M., and Mayor, S. 2005. Use of Forster’s resonance energy transfer microscopy to study lipid rafts. Biochimica et Biophysica Acta 1746:221-233.
47. Rizzo, M. A., and Piston, D. W. 2005. High-contrast imaging of fluorescent protein FRET by fluorescence polarization microscopy. Biophysical Journal 88:L14-16.
48. Rizzo, M. A., Springer, G. H., Granada, B., and Piston, D. W. 2004. An improved cyan fluorescent protein variant useful for FRET. Nature Biotechnology 22:445-449.
49. Runnels, L. W., and Scarlata, S. F. 1995. Theory and application of fluorescence homotransfer to melittin oligomerization. Biophysical Journal 69:1569-1583.
50. Scott, T. W., Haber, K. S., and Albrecht, A. C. 1983. Two-photon photoselection in rigid solutions: A study of the B2u → A1g transition in benzene. Journal of Chemical Physics 78:150-157.
51. Sharma, P., Varma, R., Sarasij, R. C., Ira Gousset, K., Krishnamoorthy, G., et al. 2004. Nanoscale organization of multiple GPI-anchored proteins in living cell membranes. Cell 116:577-589.
52. Soleillet, P. 1929. Sur les parametres caracterisant la polarisation partielle de la lumierer dans les phenomenes de fluorescence. Annales de Physique (Paris) 12:23-97.
53. Suhling, K., Siegel, J., Lanigan, P. M., Leveque-Fort, S., Webb, S. E., Phillips, D., et al. 2004. Timeresolved fluorescence anisotropy imaging applied to live cells. Optics Letters 29:584-586.
54. Tanaka, F., and Martaga, N. 1979. Theory of time-dependent photo-selection in interacting fixed systems. Photochemistry and Photobiology 29:1091-1097.
55. Tanaka, F., and Martaga, N. 1982. Dynamic depolarization of interacting fluorophores. Effect of internal rotation and energy transfer. Biophysical Journal 39:129-140.
56. Thaler, C., Koushik, S. V., Puhl, H. L., Blank, P. S., and Vogel, S. S. 2009. Structural rearrangement of CaMKIIa catalytic domains encodes activation. Proceedings of the National Academy of Sciences USA 10.1073/pnas.0901913106.
57. Valeur, B. 2002. Molecular fluorescence. Weinheim: Wiley-VCH.
58. van der Meer, B. W. 2002. Kappa-squared: From nuisance to new sense. Journal of Biotechnology 82:181-196.
59. Varma, R., and Mayor, S. 1998. GPI-anchored proteins are organized in submicron domains at the cell surface. Nature 394:798-801.
60. Vogel, S. S., Thaler, C., and Koushik, S. V. 2006. Fanciful FRET. Sci STKE 2006: re2.
61. Volkmer, A., Subramaniam, V., Birch, D. J., and Jovin, T. M. 2000. One-and two-photon excited fluorescence lifetimes and anisotropy decays of green fluorescent proteins. Biophysical Journal 78:1589-1598.
62. Wallrabe, H., and Periasamy, A. 2005. Imaging protein molecules using FRET and FLIM microscopy. Current Opinion in Biotechnology 16:19-27.
63. Wang, X. F., Periasamy, A., and Herman, B. 1992. Fluorescence lifetime imaging microscopy (FLIM): Instrumentation and applications. Critical Reviews in Analytical Chemistry 23:369-395.
64. Weber, G. 1952. Polarization of the fluorescence of macromolecules. I. Theory and experimental method. Biochemical Journal 51:145-155.
65. Yan, Y., and Marriott, G. 2003. Fluorescence resonance energy transfer imaging microscopy and fluorescence polarization imaging microscopy. Methods in Enzymology 360:561-580.
66. Yeow, E. K., and Clayton, A. H. 2007. Enumeration of oligomerization states of membrane proteins in living cells by homo-FRET spectroscopy and microscopy: Theory and application. Biophysical Journal 92:3098-3104.