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Volumn 10, Issue FEBRUARY2015, 2015, Pages

Complete genome sequence and description of Salinispira pacifica gen. Nov., sp. nov., a novel spirochaete isolated form a hypersaline microbial mat

Author keywords

Fermentative metabolism; Hypersaline microbial mat; Kiritimati atoll; Oxygen tolerance; Spirochaetes

Indexed keywords

AMPICILLIN; ARABINOSE; CARBENICILLIN; CAROTENOID; CASAMINO ACID; CHLORAMPHENICOL; CYCLOSERINE; FRUCTOSE; GENOMIC DNA; GENTAMICIN; GLUCOSE; KANAMYCIN A; MALTOSE; MANNOSE; ORNITHINE; PENICILLIN G; PEPTONE; PHOSPHATIDYLGLYCEROL; RIBOSE; RIFAMPICIN; RNA 16S; SUCROSE; XYLOSE;

EID: 84928983466     PISSN: None     EISSN: 19443277     Source Type: Journal    
DOI: 10.1186/1944-3277-10-7     Document Type: Article
Times cited : (26)

References (62)
  • 1
    • 23944443706 scopus 로고    scopus 로고
    • Microbial lithification in marine stromatolites and hypersaline mats
    • Dupraz C, Visscher PT. Microbial lithification in marine stromatolites and hypersaline mats. Trends Microbiol. 2005; 13:429-38
    • (2005) Trends Microbiol , vol.13 , pp. 429-438
    • Dupraz, C.1    Visscher, P.T.2
  • 2
    • 84858040458 scopus 로고    scopus 로고
    • Photosynthesis versus exopolymer degradation in the formation of microbialites on the atoll of Kiritimati, Republic of Kiribati, Central Pacific
    • Arp G, Helms G, Karlinska K, Schumann G, Reimer A, Reitner J, Trichet J. Photosynthesis versus exopolymer degradation in the formation of microbialites on the atoll of Kiritimati, Republic of Kiribati, Central Pacific. Geomicrobiol J. 2012; 29:29-65
    • (2012) Geomicrobiol J , vol.29 , pp. 29-65
    • Arp, G.1    Helms, G.2    Karlinska, K.3    Schumann, G.4    Reimer, A.5    Reitner, J.6    Trichet, J.7
  • 3
    • 0035368824 scopus 로고    scopus 로고
    • Photosynthesis-induced biofilm calcification and calcium concentrations in Phanerozoic oceans
    • Arp G, Reimer A, Reitner J. Photosynthesis-induced biofilm calcification and calcium concentrations in Phanerozoic oceans. Science. 2001; 292:1701-4
    • (2001) Science , vol.292 , pp. 1701-1704
    • Arp, G.1    Reimer, A.2    Reitner, J.3
  • 4
    • 38949127042 scopus 로고    scopus 로고
    • A, Finney M, Ríos-Velázquez C, Handelsman J, Ruvkun G. Miniprimer PCR, a new lens for viewing the microbial world
    • Isenbarger T a, Finney M, Ríos-Velázquez C, Handelsman J, Ruvkun G. Miniprimer PCR, a new lens for viewing the microbial world. Appl Environ Microbiol. 2008; 74:840-9
    • (2008) Appl Environ Microbiol , vol.74 , pp. 840-849
    • Isenbarger, T.1
  • 6
    • 84878872665 scopus 로고    scopus 로고
    • Phylogenetic analysis of a microbialite-forming microbial mat from a hypersaline lake of the Kiritimati Atoll, Central Pacific
    • Schneider D, Arp G, Reimer A, Reitner J, Daniel R. Phylogenetic analysis of a microbialite-forming microbial mat from a hypersaline lake of the Kiritimati Atoll, Central Pacific. PLoS One. 2013; 8:e66662
    • (2013) Plos One , vol.8
    • Schneider, D.1    Arp, G.2    Reimer, A.3    Reitner, J.4    Daniel, R.5
  • 10
    • 70449462400 scopus 로고
    • The anaerobic mesophilic cellulolytic bacteria
    • Hungate R. The anaerobic mesophilic cellulolytic bacteria. Bacteriol Rev. 1950; 14:1-49
    • (1950) Bacteriol Rev , vol.14 , pp. 1-49
    • Hungate, R.1
  • 11
    • 0015464618 scopus 로고
    • Commentary on the Hungate technique for culture of anaerobic bacteria
    • Bryant M. Commentary on the Hungate technique for culture of anaerobic bacteria. Am J Clin Nutr. 1972; 25:1324-8
    • (1972) Am J Clin Nutr , vol.25 , pp. 1324-1328
    • Bryant, M.1
  • 13
    • 84940513755 scopus 로고    scopus 로고
    • DSMZ catalogue microorganisms. [http://www.dsmz.de/catalogues/catalogue-microorganisms.html]
  • 15
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007; 35:7188-96
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 16
    • 84940571559 scopus 로고    scopus 로고
    • updated June 2014
    • List of prokaryotic names validly published (updated June 2014). [http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date/prokariotic-nomenclature-up-to-date.html]
    • List of Prokaryotic Names Validly Published
  • 17
    • 84906057028 scopus 로고    scopus 로고
    • Spirochaeta psychrophila sp. Nov, a psychrophilic spirochaete isolated from subseafloor sediment offshore Shimokita, Japan, and emended description of the genus Spirochaeta
    • in press
    • Miyazaki M, Sakai S, Yamanaka Y, Saito Y, Takai K, Imachi H. Spirochaeta psychrophila sp. nov., a psychrophilic spirochaete isolated from subseafloor sediment offshore Shimokita, Japan, and emended description of the genus Spirochaeta. Int J Syst Evol Microbiol. 2014; in press
    • (2014) Int J Syst Evol Microbiol
    • Miyazaki, M.1    Sakai, S.2    Yamanaka, Y.3    Saito, Y.4    Takai, K.5    Imachi, H.6
  • 20
    • 84859165788 scopus 로고    scopus 로고
    • A, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC. The Genomes OnLine Database (GOLD) v. 4: Status of genomic and metagenomic projects and their associated metadata
    • (Database issue)
    • Pagani I, Liolios K, Jansson J, Chen I-M a, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC. The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res. 2012; 40(Database issue):D571-9
    • (2012) Nucleic Acids Res , vol.40 , pp. D571-D579
    • Pagani, I.1    Liolios, K.2    Jansson, J.3    Chen, I.-M.4
  • 24
    • 62849125044 scopus 로고    scopus 로고
    • The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. Nov, sp. Nov
    • Spring S, Lünsdorf H, Fuchs BM, Tindall BJ. The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov. PLoS ONE. 2009; 4:e4866
    • (2009) Plos ONE , vol.4
    • Spring, S.1    Lünsdorf, H.2    Fuchs, B.M.3    Tindall, B.J.4
  • 25
    • 0021836170 scopus 로고
    • A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria
    • Cord-Ruwisch R. A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods. 1985; 4:33-6
    • (1985) J Microbiol Methods , vol.4 , pp. 33-36
    • Cord-Ruwisch, R.1
  • 29
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A. 1990; 87:4576-9
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 30
    • 84863595850 scopus 로고    scopus 로고
    • Spirochaetes Garrity and Holt 2001
    • Brenner DJ, Krieg NR, Garrity GM, Staley JT, New York: Springer
    • Paster B. Phylum XV. Spirochaetes Garrity and Holt 2001. In: Brenner DJ, Krieg NR, Garrity GM, Staley JT, editors. Bergey’s Manual® Syst Bacteriol. New York: Springer; 2010: p. 471-566
    • (2010) Bergey’s Manual® Syst Bacteriol , pp. 471-566
    • Paster, B.1    Phylum, X.V.2
  • 31
    • 84885352440 scopus 로고    scopus 로고
    • A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: Proposal for a taxonomic revision of the phylum
    • (July)
    • Gupta RS, Mahmood S, Adeolu M. A phylogenomic and molecular signature based approach for characterization of the phylum Spirochaetes and its major clades: proposal for a taxonomic revision of the phylum. Front Microbiol. 2013; 4(July):217
    • (2013) Front Microbiol , vol.4
    • Gupta, R.S.1    Mahmood, S.2    Adeolu, M.3
  • 35
    • 33751223537 scopus 로고    scopus 로고
    • Desulfotomaculum thermosubterraneum sp. Nov, a thermophilic sulfate-reducer isolated from an underground mine located in a geothermally active area
    • Kaksonen AH, Spring S, Schumann P, Kroppenstedt RM, Puhakka JA. Desulfotomaculum thermosubterraneum sp. nov, a thermophilic sulfate-reducer isolated from an underground mine located in a geothermally active area. Int J Syst Evol Microbiol. 2006; 56:2603-8
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2603-2608
    • Kaksonen, A.H.1    Spring, S.2    Schumann, P.3    Kroppenstedt, R.M.4    Puhakka, J.A.5
  • 37
    • 83155182859 scopus 로고    scopus 로고
    • Peptidoglycan structure
    • Schumann P. Peptidoglycan structure. Methods Microbiol. 2011; 38:101-29
    • (2011) Methods Microbiol , vol.38 , pp. 101-129
    • Schumann, P.1
  • 38
    • 0015462556 scopus 로고
    • Peptidoglycan types of bacterial cell walls and their taxonomic implications
    • Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev. 1972; 36:407-77
    • (1972) Bacteriol Rev , vol.36 , pp. 407-477
    • Schleifer, K.H.1    Kandler, O.2
  • 40
    • 84875634162 scopus 로고    scopus 로고
    • Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdóttir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. 2013; 14:178-92
    • (2013) Brief Bioinform , vol.14 , pp. 178-192
    • Thorvaldsdóttir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 41
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009; 25:1754-60
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 44
    • 77953200590 scopus 로고    scopus 로고
    • The surprising diversity of clostridial hydrogenases: A comparative genomic perspective
    • Calusinska M, Happe T, Joris B, Wilmotte A. The surprising diversity of clostridial hydrogenases: a comparative genomic perspective. Microbiology. 2010; 156:1575-88
    • (2010) Microbiology , vol.156 , pp. 1575-1588
    • Calusinska, M.1    Happe, T.2    Joris, B.3    Wilmotte, A.4
  • 45
    • 0037934657 scopus 로고    scopus 로고
    • A simple energy-conserving system: Proton reduction coupled to proton translocation
    • Sapra R, Bagramyan K, Adams MWW. A simple energy-conserving system: proton reduction coupled to proton translocation. Proc Natl Acad Sci U S A. 2003; 100:7545-50
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 7545-7550
    • Sapra, R.1    Bagramyan, K.2    Adams, M.W.W.3
  • 47
    • 79951579402 scopus 로고    scopus 로고
    • Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes
    • Biegel E, Schmidt S, González JM, Müller V. Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell Mol Life Sci. 2011; 68:613-34
    • (2011) Cell Mol Life Sci , vol.68 , pp. 613-634
    • Biegel, E.1    Schmidt, S.2    González, J.M.3    Müller, V.4
  • 48
    • 0019953481 scopus 로고
    • ATP-driven sodium pump in Streptococcus faecalis
    • Heefner DL, Harold FM. ATP-driven sodium pump in Streptococcus faecalis. Proc Natl Acad Sci U S A. 1982; 79:2798-802
    • (1982) Proc Natl Acad Sci U S A , vol.79 , pp. 2798-2802
    • Heefner, D.L.1    Harold, F.M.2
  • 50
    • 0242608621 scopus 로고    scopus 로고
    • Pathways of oxidative damage
    • Imlay JA. Pathways of oxidative damage. Annu Rev Microbiol. 2003; 57:395-418
    • (2003) Annu Rev Microbiol , vol.57 , pp. 395-418
    • Imlay, J.A.1
  • 51
    • 0033758905 scopus 로고    scopus 로고
    • Oxygen respiration by Desulfovibrio species
    • Cypionka H. Oxygen respiration by Desulfovibrio species. Annu Rev Microbiol. 2000; 54:827-48
    • (2000) Annu Rev Microbiol , vol.54 , pp. 827-848
    • Cypionka, H.1
  • 52
    • 0032748327 scopus 로고    scopus 로고
    • Isolation, oxygen sensitivity, and virulence of NADH oxidase mutants of the anaerobic spirochete Brachyspira (Serpulina) hyodysenteriae, etiologic agent of swine dysentery
    • Stanton TB, Rosey EL, Kennedy MJ, Jensen NS, Bosworth BT. Isolation, oxygen sensitivity, and virulence of NADH oxidase mutants of the anaerobic spirochete Brachyspira (Serpulina) hyodysenteriae, etiologic agent of swine dysentery. Appl Environ Microbiol. 1999; 65:5028-34
    • (1999) Appl Environ Microbiol , vol.65 , pp. 5028-5034
    • Stanton, T.B.1    Rosey, E.L.2    Kennedy, M.J.3    Jensen, N.S.4    Bosworth, B.T.5
  • 53
  • 54
    • 33645056190 scopus 로고    scopus 로고
    • Borrelia burgdorferi bb0728 encodes a coenzyme A disulphide reductase whose function suggests a role in intracellular redox and the oxidative stress response
    • Boylan J A, Hummel CS, Benoit S, Garcia-Lara J, Treglown-Downey J, Crane EJ, Gherardini FC. Borrelia burgdorferi bb0728 encodes a coenzyme A disulphide reductase whose function suggests a role in intracellular redox and the oxidative stress response. Mol Microbiol. 2006; 59:475-86
    • (2006) Mol Microbiol , vol.59 , pp. 475-486
    • Boylan, J.A.1    Hummel, C.S.2    Benoit, S.3    Garcia-Lara, J.4    Treglown-Downey, J.5    Crane, E.J.6    Gherardini, F.C.7
  • 55
    • 0035209075 scopus 로고    scopus 로고
    • Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli
    • Seaver LC, Imlay JA. Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli. J Bacteriol. 2001; 183:7173-81
    • (2001) J Bacteriol , vol.183 , pp. 7173-7181
    • Seaver, L.C.1    Imlay, J.A.2
  • 56
    • 0017617529 scopus 로고
    • Physiology and evolution of spirochetes
    • Canale-Parola E. Physiology and evolution of spirochetes. Bacteriol Rev. 1977; 41:181-204
    • (1977) Bacteriol Rev , vol.41 , pp. 181-204
    • Canale-Parola, E.1
  • 57
    • 0024407333 scopus 로고
    • Antioxidant activity of beta-carotene-related carotenoids in solution
    • Terao J. Antioxidant activity of beta-carotene-related carotenoids in solution. Lipids. 1989; 24:659-61
    • (1989) Lipids , vol.24 , pp. 659-661
    • Terao, J.1
  • 58
    • 0015550821 scopus 로고
    • Morphological and ecological characteristics of Spirochaeta plicatilis
    • Blakemore RP, Canale-Parola E. Morphological and ecological characteristics of Spirochaeta plicatilis. Arch Mikrobiol. 1973; 89:273-89
    • (1973) Arch Mikrobiol , vol.89 , pp. 273-289
    • Blakemore, R.P.1    Canale-Parola, E.2
  • 59
    • 0030031131 scopus 로고    scopus 로고
    • Spirochaeta alkalica sp. Nov, Spirochaeta africana sp. Nov, and Spirochaeta asiatica sp. Nov, alkaliphilic anaerobes from the Continental Soda Lakes in Central Asia and the East African Rift
    • Zhilina TN, Zavarzin GA, Rainey F, Kevbrin VV, Kostrikina NA, Lysenko AM. Spirochaeta alkalica sp. nov., Spirochaeta africana sp. nov., and Spirochaeta asiatica sp. nov., alkaliphilic anaerobes from the Continental Soda Lakes in Central Asia and the East African Rift. Int J Syst Bacteriol. 1996; 46:305-12
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 305-312
    • Zhilina, T.N.1    Zavarzin, G.A.2    Rainey, F.3    Kevbrin, V.V.4    Kostrikina, N.A.5    Lysenko, A.M.6
  • 60
    • 69449086311 scopus 로고    scopus 로고
    • Spirochaeta dissipatitropha sp. Nov, an alkaliphilic, obligately anaerobic bacterium, and emended description of the genus Spirochaeta Ehrenberg 1835
    • Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader P. Spirochaeta dissipatitropha sp. nov., an alkaliphilic, obligately anaerobic bacterium, and emended description of the genus Spirochaeta Ehrenberg 1835. Int J Syst Evol Microbiol. 2009; 59:1798-804
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1798-1804
    • Pikuta, E.V.1    Hoover, R.B.2    Bej, A.K.3    Marsic, D.4    Whitman, W.B.5    Krader, P.6
  • 61
    • 0017296927 scopus 로고
    • Spirochaeta halophila sp. N, a facultative anaerobe from a high-salinity pond
    • Greenberg EP, Canale-Parola E. Spirochaeta halophila sp. n, a facultative anaerobe from a high-salinity pond. Arch Microbiol. 1976; 110:185-94
    • (1976) Arch Microbiol , vol.110 , pp. 185-194
    • Greenberg, E.P.1    Canale-Parola, E.2


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