Desulfotomaculum thermosubterraneum sp. nov., a thermophilic sulfate-reducer isolated from an underground mine located in a geothermally active area

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 11, 2006, Pages 2603-2608

  Kaksonen, Anna H ^a   Spring, Stefan ^b   Schumann, Peter ^b   Kroppenstedt, Reiner M ^b   Puhakka, Jaakko A ^a  

^a TAMPERE UNIVERSITY OF TECHNOLOGY   (Finland)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ALCOHOL; BACTERIAL DNA; CARBON DIOXIDE; CARBOXYLIC ACID; CYTOSINE; FATTY ACID; GUANOSINE; LACTIC ACID; MENAQUINONE; PROTON; PYRUVIC ACID; RNA 16S; SODIUM CHLORIDE; SULFATE; SULFITE; SULFUR; THIOSULFATE;

ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DESULFOTOMACULUM; DESULFOTOMACULUM KUZNETSOVII; DESULFOTOMACULUM LUCIAE; DESULFOTOMACULUM SOLFATARICUM; DESULFOTOMACULUM THERMOSUBTERRANEUM; DNA CONTENT; DNA DNA HYBRIDIZATION; ELECTRON; GRAM POSITIVE BACTERIUM; JAPAN; MINING; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; TEMPERATURE;

ALANINE; ALCOHOLS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARBOHYDRATE METABOLISM; CARBOXYLIC ACIDS; DESULFOTOMACULUM; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GROWTH INHIBITORS; HYDROGEN; HYDROGEN-ION CONCENTRATION; JAPAN; LACTIC ACID; MINING; MOLECULAR SEQUENCE DATA; MOVEMENT; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PYRUVIC ACID; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; SOIL MICROBIOLOGY; SULFATES; SULFITES; SULFUR; TEMPERATURE;

BACTERIA (MICROORGANISMS); DESULFOTOMACULUM; DESULFOTOMACULUM KUZNETSOVII; DESULFOTOMACULUM LUCIAE; DESULFOTOMACULUM SOLFATARICUM; POSIBACTERIA;

EID: 33751223537     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64439-0     Document Type: Article

References (36)

1. Campbell, L. L. & Postgate, J. R. (1965). Classification of spore-forming sulfate-reducing bacteria. Bacteriol Rev 29, 359-363.
2. Cashion, P., Hodler-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
3. Collins, M. D. & Jones, D. (1981). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45, 316-354.
4. 2 from geothermal ground water. Antonie van Leeuwenhoek 54, 165-178.
5. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
6. Escara, J. F. & Hutton, J. R. (1980). Thermal stability and renaturation of DNA in dimethyl sulfoxide solutions: acceleration of renaturation rate. Biopolymers 19, 1315-1327.
7. Fardeau, M.-L., Ollivier, B., Patel, B. K. C., Dwivedi, P., Ragot M. & Garcia, J.-L. (1995). Isolation and characterization of a thermophilic sulfate-reducing bacterium, Desulfotomaculum thermosapovorans sp. nov. Int J Syst Bacteriol 45, 218-221.
8. Goorissen, H. P., Boschker, H. T. S., Stams, A. J. M. & Hansen, T. A. (2003). Isolation of thermophilic Desulfotomaculum strains with methanol and sulfite from solfataric mud pools, and characterization of Desulfotomaculum solfataricum sp. nov. Int J Syst Evol Microbiol 53, 1223-1229.
9. Gregersen, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
10. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenesis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
11. Heimbrook, M. E., Wang, W. L. L. & Campbell, G. (1989). Staining bacterial flagella easily. J Clin Microbiol 27, 2612-2615.
12. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
13. Jahnke, K.-D. (1992). Basic computer program for evaluation of spectroscopic DNA renaturation data from Gilford-system 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 25, 61-73.
14. Kaksonen, A. H., Plumb, J. J., Robertson, W. J., Franzmann, P. D., Gibson, J. A. E. & Puhakka, J. A. (2004). Culturable diversity and community fatty acid profiling of sulfate-reducing fluidized-bed reactors treating acidic, metal-containing wastewater. Geomicrobiol J 21, 469-480.
15. Kaksonen, A. H., Plumb, J. J., Robertson, W. J., Spring, S., Schumann, P., Franzmann, P. D. & Puhakka, J. A. (2006). Novel thermophilic sulfate-reducing bacteria from a geothermally active underground mine in Japan. Appl Environ Microbiol 72, 3759-3762.
16. Kämpfer, P. & Kroppenstedt R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
17. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-179. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
18. Liu, Y., Karnauchow, T. M., Jarrell, K. F., Balkwill, D. L., Drake, G. R., Ringelberg, D., Clarno, R. & Boone, D. R. (1997). Description of two new thermophilic Desulfotomaculum spp., Desulfotomaculum putei sp. nov., from a deep terrestrial subsurface, and Desulfotomaculum luciae sp. nov., from a hot spring. Int J Syst Bacteriol 47, 615-621.
19. Love, C. A., Patel, B. K. C., Nichols, P. D. & Stackebrandt, E. (1993). Desulfotomaculum australicum, sp. nov., a thermophilic sulfate-reducing bacterium isolated from the Great Artesian Basin of Australia. Syst Appl Microbiol 16, 244-251.
20. Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
21. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
22. Min, H. & Zinder, S. H. (1990). Isolation and characterization of a thermophilic sulfate-reducing bacterium Desulfotomaculum thermo-acetoxidans sp. nov. Arch Microbiol 153, 399-404.
23. Monciardini, P., Cavaletti, L., Schumann, P., Rohde, M. & Donadio, S. (2003). Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. Int J Syst Evol Microbiol 53, 569-576.
24. Nazina, T. N., Ivanova, A. E., Kanchaveli, L. P. & Rozanova, E. P. 1989). A new sporeforming thermophilic methylotrophic sulfate-reducing bacterium, Desulfotomaculum kuznetsovii sp. nov. Microbiology (English translation of Mikrobiologiia) 57, 659-663.
25. Nazina, T. N., Rozanova, E. P., Belyakova, E. V., Lysenko, A. M., Poltaraus, A. B., Tourova, T. P., Osipov, G. A. & Belyaev, S. S. (2005). Description of Desulfotomaculum nigrificans subsp. salinus' as a new species, Desulfotomaculum salinum sp. nov. Microbiology (English translation of Mikrobiologiia) 74, 567-574.
26. Nilsen, R. K., Torsvik, T. & Lien, T. (1996). Desulfotomaculum thermocisternum sp. nov., a sulfate reducer isolated from a hot North Sea oil reservoir. Int J Syst Bacteriol 46, 397-402.
27. Parshina, S. N., Sipma, J., Nakashimada, Y., Henstra, A. M., Smidt, H., Lysenko, A. M., Lens, P. N. L., Lettinga, G. & Stams, A. J. M. (2005). Desulfotomaculum carboxydivorans sp. nov., a novel sulfate-reducing bacterium capable of growth at 100% CO. Int J Syst Evol Microbiol 55, 2159-2165.
28. Pikuta, E., Lysenko, A., Suzina, N., Osipov, G., Kuznetsov, B., Tourova, T., Akimenko, V. & Laurinavichius, K. (2000). Desulfotomaculum alkaliphilum sp. nov., a new alkaliphilic, moderately thermophilic, sulfate-reducing bacterium. Int J Syst Evol Microbiol 50, 25-33.
29. Plugge, C. M., Balk, M. & Stams, A. J. M. (2002). Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum subsp. nov., a thermophilic, syntrophic, propionate-oxidizing, spore-forming bacterium. Int J Syst Evol Microbiol 52, 391-399.
30. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behaviour of the isomers of α,ε-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
31. Stookey, L. L. (1970). Ferrozine - a new spectrophotometric reagent for iron. Anal Chem 42, 779-781.
32. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
33. Tasaki, M., Kamagata, Y., Nakamura, K. & Mikami, E. (1991). Isolation and characterization of a thermophilic benzoate-degrading, sulfate-reducing bacterium, Desulfotomaculum thermobenzoicum sp. nov. Arch Microbiol 155, 348-352.
34. Vandieken, V., Knoblauch, C. & Jorgensen, B. B. (2006). Desulfotomaculum arcticum sp. nov., a novel spore-forming, moderately thermophilic, sulfate-reducing bacterium isolated from a permanently cold fjord sediment of Svalbard. Int J Syst Evol Microbiol 56, 687-690.
35. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
36. Werkman, C. H. & Weaver, H. J. (1927). Studies in the bacteriology of sulphur stinker spoilage of canned sweet corn. Iowa State Coll J Sci 2, 57-67.