-
1
-
-
58549107193
-
Quantitative strain-specific detection of Lactobacillus rhamnosus GG in human faecal samples by real-time PCR
-
Ahlroos T., Tynkkynen S. Quantitative strain-specific detection of Lactobacillus rhamnosus GG in human faecal samples by real-time PCR. J. Appl. Microbiol. 2009, 106:506-514. 10.1111/j.1365-2672.2008.04018.x.
-
(2009)
J. Appl. Microbiol.
, vol.106
, pp. 506-514
-
-
Ahlroos, T.1
Tynkkynen, S.2
-
2
-
-
14644418434
-
Low copy number DNA template can render polymerase chain reaction error prone in a sequence-dependent manner
-
Akbari M., Hansen M.D., Halgunset J., Skorpen F., Krokan H.E. Low copy number DNA template can render polymerase chain reaction error prone in a sequence-dependent manner. J. Mol. Diagn. 2005, 7:36-39.
-
(2005)
J. Mol. Diagn.
, vol.7
, pp. 36-39
-
-
Akbari, M.1
Hansen, M.D.2
Halgunset, J.3
Skorpen, F.4
Krokan, H.E.5
-
3
-
-
0141815821
-
Selective plating underestimates abundance and shows differential recovery of bifidobacterial species from human feces
-
Apajalahti J.H.A., Kettunen A., Nurminen P.H., Jatila H., Holben W.E. Selective plating underestimates abundance and shows differential recovery of bifidobacterial species from human feces. Appl. Environ. Microbiol. 2003, 69:5731-5735.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5731-5735
-
-
Apajalahti, J.H.A.1
Kettunen, A.2
Nurminen, P.H.3
Jatila, H.4
Holben, W.E.5
-
4
-
-
77952441809
-
Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens
-
Ariefdjohan M.W., Savaiano D.A., Nakatsu C.H. Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens. Nutr. J. 2010, 9:23. 10.1186/1475-2891-9-23.
-
(2010)
Nutr. J.
, vol.9
, pp. 23
-
-
Ariefdjohan, M.W.1
Savaiano, D.A.2
Nakatsu, C.H.3
-
5
-
-
84858709310
-
Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis
-
Bahl M.I., Bergström A., Licht T.R. Freezing fecal samples prior to DNA extraction affects the Firmicutes to Bacteroidetes ratio determined by downstream quantitative PCR analysis. FEMS Microbiol. Lett. 2012, 329:193-197. 10.1111/j.1574-6968.2012.02523.x.
-
(2012)
FEMS Microbiol. Lett.
, vol.329
, pp. 193-197
-
-
Bahl, M.I.1
Bergström, A.2
Licht, T.R.3
-
6
-
-
84878869719
-
A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples
-
Claassen S., du Toit E., Kaba M., Moodley C., Zar H.J., Nicol M.P. A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples. J. Microbiol. Methods 2013, 94:103-110. 10.1016/j.mimet.2013.05.008.
-
(2013)
J. Microbiol. Methods
, vol.94
, pp. 103-110
-
-
Claassen, S.1
du Toit, E.2
Kaba, M.3
Moodley, C.4
Zar, H.J.5
Nicol, M.P.6
-
7
-
-
34248164361
-
Optimization of a 12-hour TaqMan PCR-based method for detection of Salmonella bacteria in meat
-
Josefsen M.H., Krause M., Hansen F., Hoorfar J. Optimization of a 12-hour TaqMan PCR-based method for detection of Salmonella bacteria in meat. Appl. Environ. Microbiol. 2007, 73:3040-3048. 10.1128/AEM.02823-06.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 3040-3048
-
-
Josefsen, M.H.1
Krause, M.2
Hansen, F.3
Hoorfar, J.4
-
8
-
-
84896089558
-
The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing
-
Kennedy N.A., Walker A.W., Berry S.H., Duncan S.H., Farquarson F.M., Louis P., Thomson J.M., Satsangi J., Flint H.J., Parkhill J., Lees C.W., Hold G.L. The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing. PLoS One 2014, 9:e88982. 10.1371/journal.pone.0088982.
-
(2014)
PLoS One
, vol.9
, pp. e88982
-
-
Kennedy, N.A.1
Walker, A.W.2
Berry, S.H.3
Duncan, S.H.4
Farquarson, F.M.5
Louis, P.6
Thomson, J.M.7
Satsangi, J.8
Flint, H.J.9
Parkhill, J.10
Lees, C.W.11
Hold, G.L.12
-
9
-
-
33747342938
-
Comparative, collaborative, and on-site validation of a TaqMan PCR method as a tool for certified production of fresh, Campylobacter-free chickens
-
Krause M., Josefsen M.H., Lund M., Jacobsen N.R., Brorsen L., Moos M., Stockmarr A., Hoorfar J. Comparative, collaborative, and on-site validation of a TaqMan PCR method as a tool for certified production of fresh, Campylobacter-free chickens. Appl. Environ. Microbiol. 2006, 72:5463-5468. 10.1128/AEM.00291-06.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5463-5468
-
-
Krause, M.1
Josefsen, M.H.2
Lund, M.3
Jacobsen, N.R.4
Brorsen, L.5
Moos, M.6
Stockmarr, A.7
Hoorfar, J.8
-
10
-
-
0038066208
-
Evaluation of QIAamp? DNA Stool Mini Kit for ecological studies of gut microbiota
-
Li M., Gong J., Cottrill M., Yu H., De Lange C., Burton J., Topp E. Evaluation of QIAamp? DNA Stool Mini Kit for ecological studies of gut microbiota. J. Microbiol. Methods 2003, 54:13-20. 10.1016/S0167-7012(02)00260-9.
-
(2003)
J. Microbiol. Methods
, vol.54
, pp. 13-20
-
-
Li, M.1
Gong, J.2
Cottrill, M.3
Yu, H.4
De Lange, C.5
Burton, J.6
Topp, E.7
-
11
-
-
84883864245
-
Meta-analyses of studies of the human microbiota
-
Lozupone C.A., Stombaugh J., Gonzalez A., Ackermann G., Wendel D., Vázquez-Baeza Y., Jansson J.K., Gordon J.I., Knight R. Meta-analyses of studies of the human microbiota. Genome Res. 2013, 23:1704-1714. 10.1101/gr.151803.112.
-
(2013)
Genome Res.
, vol.23
, pp. 1704-1714
-
-
Lozupone, C.A.1
Stombaugh, J.2
Gonzalez, A.3
Ackermann, G.4
Wendel, D.5
Vázquez-Baeza, Y.6
Jansson, J.K.7
Gordon, J.I.8
Knight, R.9
-
12
-
-
84856061103
-
The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples
-
Maukonen J., Simões C., Saarela M. The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples. FEMS Microbiol. Ecol. 2012, 79:697-708. 10.1111/j.1574-6941.2011.01257.x.
-
(2012)
FEMS Microbiol. Ecol.
, vol.79
, pp. 697-708
-
-
Maukonen, J.1
Simões, C.2
Saarela, M.3
-
13
-
-
0036242883
-
A comparison of five methods for extraction of bacterial DNA from human faecal samples
-
McOrist A.L., Jackson M., Bird A.R. A comparison of five methods for extraction of bacterial DNA from human faecal samples. J. Microbiol. Methods 2002, 50:131-139.
-
(2002)
J. Microbiol. Methods
, vol.50
, pp. 131-139
-
-
McOrist, A.L.1
Jackson, M.2
Bird, A.R.3
-
14
-
-
0030909382
-
Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model
-
Monteiro L., Bonnemaison D., Vekris A., Petry K.G., Bonnet J., Vidal R., Cabrita J., Mégraud F. Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model. J. Clin. Microbiol. 1997, 35:995-998.
-
(1997)
J. Clin. Microbiol.
, vol.35
, pp. 995-998
-
-
Monteiro, L.1
Bonnemaison, D.2
Vekris, A.3
Petry, K.G.4
Bonnet, J.5
Vidal, R.6
Cabrita, J.7
Mégraud, F.8
-
15
-
-
38049080602
-
Fecal collection, ambient preservation, and DNA extraction for PCR amplification of bacterial and human markers from human feces
-
Nechvatal J.M., Ram J.L., Basson M.D., Namprachan P., Niec S.R., Badsha K.Z., Matherly L.H., Majumdar A.P.N., Kato I. Fecal collection, ambient preservation, and DNA extraction for PCR amplification of bacterial and human markers from human feces. J. Microbiol. Methods 2008, 72:124-132. 10.1016/j.mimet.2007.11.007.
-
(2008)
J. Microbiol. Methods
, vol.72
, pp. 124-132
-
-
Nechvatal, J.M.1
Ram, J.L.2
Basson, M.D.3
Namprachan, P.4
Niec, S.R.5
Badsha, K.Z.6
Matherly, L.H.7
Majumdar, A.P.N.8
Kato, I.9
-
16
-
-
78649694087
-
Impacts of inter- and intralaboratory variations on the reproducibility of microbial community analyses
-
Pan Y., Bodrossy L., Frenzel P., Hestnes A.G., Krause S., Lüke C., Meima-Franke M., Siljanen H., Svenning M.M., Bodelier P.L.E. Impacts of inter- and intralaboratory variations on the reproducibility of microbial community analyses. Appl. Environ. Microbiol. 2010, 76:7451-7458. 10.1128/AEM.01595-10.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7451-7458
-
-
Pan, Y.1
Bodrossy, L.2
Frenzel, P.3
Hestnes, A.G.4
Krause, S.5
Lüke, C.6
Meima-Franke, M.7
Siljanen, H.8
Svenning, M.M.9
Bodelier, P.L.E.10
-
17
-
-
84889102325
-
Comparison of direct boiling method with commercial kits for extracting fecal microbiome DNA by Illumina sequencing of 16S rRNA tags
-
Peng X., Yu K.Q., Deng G.H., Jiang Y.X., Wang Y., Zhang G.X., Zhou H.W. Comparison of direct boiling method with commercial kits for extracting fecal microbiome DNA by Illumina sequencing of 16S rRNA tags. J. Microbiol. Methods 2013, 95:455-462. 10.1016/j.mimet.2013.07.015.
-
(2013)
J. Microbiol. Methods
, vol.95
, pp. 455-462
-
-
Peng, X.1
Yu, K.Q.2
Deng, G.H.3
Jiang, Y.X.4
Wang, Y.5
Zhang, G.X.6
Zhou, H.W.7
-
18
-
-
77950683587
-
DNA extraction from bovine faeces: current status and future trends
-
Rapp D. DNA extraction from bovine faeces: current status and future trends. J. Appl. Microbiol. 2010, 108:1485-1493. 10.1111/j.1365-2672.2009.04606.x.
-
(2010)
J. Appl. Microbiol.
, vol.108
, pp. 1485-1493
-
-
Rapp, D.1
-
19
-
-
77951977802
-
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis
-
Salonen A., Nikkilä J., Jalanka-Tuovinen J., Immonen O., Rajilić-Stojanović M., Kekkonen R.A., Palva A., de Vos W.M. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J. Microbiol. Methods 2010, 81:127-134. 10.1016/j.mimet.2010.02.007.
-
(2010)
J. Microbiol. Methods
, vol.81
, pp. 127-134
-
-
Salonen, A.1
Nikkilä, J.2
Jalanka-Tuovinen, J.3
Immonen, O.4
Rajilić-Stojanović, M.5
Kekkonen, R.A.6
Palva, A.7
de Vos, W.M.8
-
20
-
-
33846288887
-
Comparison of DNA extraction methods for analysis of turkey cecal microbiota
-
Scupham A.J., Jones J.A., Wesley I.V. Comparison of DNA extraction methods for analysis of turkey cecal microbiota. J. Appl. Microbiol. 2007, 102:401-409. 10.1111/j.1365-2672.2006.03094.x.
-
(2007)
J. Appl. Microbiol.
, vol.102
, pp. 401-409
-
-
Scupham, A.J.1
Jones, J.A.2
Wesley, I.V.3
|