Consequences of inducing intrinsic disorder in a high-affinity protein-protein interaction

Journal of the American Chemical Society

Volumn 137, Issue 16, 2015, Pages 5252-5255

  Papadakos, Grigorios ^a   Sharma, Amit ^b   Lancaster, Lorna E ^c   Bowen, Rebecca ^d,f   Kaminska, Renata ^a   Leech, Andrew P ^d   Walker, Daniel ^e   Redfield, Christina ^a   Kleanthous, Colin ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF LEEDS   (United Kingdom)

^c UNIVERSITY OF LINCOLN   (United Kingdom)

^d UNIVERSITY OF YORK   (United Kingdom)

^e UNIVERSITY OF GLASGOW   (United Kingdom)

^f Oxford Nanopore Technologies Ltd   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; KINETICS; THERMODYNAMICS;

INTRINSIC DISORDER; INTRINSICALLY DISORDERED PROTEINS; ORDERING TRANSITIONS; ORDERS OF MAGNITUDE; PRE-STEADY-STATE KINETIC ANALYSIS; PROTEIN-PROTEIN INTERACTIONS; PROTEIN-PROTEIN RECOGNITION; THERMODYNAMIC PARAMETER;

PROTEINS;

BARNASE; BARSTAR; COLICIN E3; COLICIN E3 RRNASE DOMAIN; DEOXYRIBONUCLEASE; IM3 PROTEIN; PROTEIN; RIBONUCLEASE; UNCLASSIFIED DRUG; CEIC PROTEIN, E COLI; COLICIN; INTRINSICALLY DISORDERED PROTEIN; PROTEIN BINDING; RIBOSOME PROTEIN;

ARTICLE; ASSOCIATION RATE CONSTANT; BINDING SITE; BIOPHYSICS; CALORIMETRY; COMPLEX FORMATION; DISSOCIATION; DISSOCIATION RATE CONSTANT; ENTHALPY; ENTROPY; FLAME PHOTOMETRY; HETERONUCLEAR SINGLE QUANTUM COHERENCE; HYDRODYNAMICS; HYDROGEN BOND; HYDROPHOBICITY; IONIC STRENGTH; ISOTHERMAL TITRATION CALORIMETRY; KINETICS; NITROGEN NUCLEAR MAGNETIC RESONANCE; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; PROTEIN UNFOLDING; SEDIMENTATION RATE; STATIC ELECTRICITY; THERMODYNAMICS; ULTRACENTRIFUGATION; CHEMICAL STRUCTURE; CHEMISTRY; ESCHERICHIA COLI; GENETICS; METABOLISM; POINT MUTATION; PROTEIN ANALYSIS; PROTEIN FOLDING; PROTEIN TERTIARY STRUCTURE;

COLICINS; ESCHERICHIA COLI; INTRINSICALLY DISORDERED PROTEINS; MODELS, MOLECULAR; POINT MUTATION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN INTERACTION MAPPING; PROTEIN INTERACTION MAPS; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEASES; RIBOSOMAL PROTEINS; THERMODYNAMICS;

EID: 84928715221     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja512607r     Document Type: Article

References (34)

1. Dyson, H. J.; Wright, P. E. Nat. Rev. Mol. Cell Biol. 2005, 6, 197
2. Uversky, V. N. Int. J. Biochem. Cell Biol. 2011, 43, 1090
3. Uversky, V. N. Chem. Rev. 2014, 114, 6557
4. Ward, J. J.; Sodhi, J. S.; McGuffin, L. J.; Buxton, B. F.; Jones, D. T. J. Mol. Biol. 2004, 337, 635
5. Knowles, T. P.; Vendruscolo, M.; Dobson, C. M. Nat. Rev. Mol. Cell Biol. 2014, 15, 384
6. Larsen, R. A.; Chen, G. J.; Postle, K. J. Bacteriol. 2003, 185, 4699
7. Westermark, P.; Wernstedt, C.; Wilander, E.; Hayden, D. W.; O'Brien, T. D.; Johnson, K. H. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 3881
8. Xue, B.; Uversky, V. N. J. Mol. Biol. 2014, 426, 1322
9. van der Lee, R.; Buljan, M.; Lang, B.; Weatheritt, R. J.; Daughdrill, G. W.; Dunker, A. K.; Fuxreiter, M.; Gough, J.; Gsponer, J.; Jones, D. T.; Kim, P. M.; Kriwacki, R. W.; Oldfield, C. J.; Pappu, R. V.; Tompa, P.; Uversky, V. N.; Wright, P. E.; Babu, M. M. Chem. Rev. 2014, 114, 6589
10. Liu, Z.; Huang, Y. Protein Sci. 2014, 23, 539
11. Housden, N. G.; Hopper, J. T.; Lukoyanova, N.; Rodriguez-Larrea, D.; Wojdyla, J. A.; Klein, A.; Kaminska, R.; Bayley, H.; Saibil, H. R.; Robinson, C. V.; Kleanthous, C. Science 2013, 340, 1570
12. Toretsky, J. A.; Wright, P. E. J. Cell Biol. 2014, 206, 579
13. Shoemaker, B. A.; Portman, J. J.; Wolynes, P. G. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 8868
14. Bowman, C. M.; Dahlberg, J. E.; Ikemura, T.; Konisky, J.; Nomura, M. Proc. Natl. Acad. Sci. U.S.A 1971, 68, 964
15. Ng, C. L.; Lang, K.; Meenan, N. A.; Sharma, A.; Kelley, A. C.; Kleanthous, C.; Ramakrishnan, V. Nat. Struct. Mol. Biol. 2010, 17, 1241
16. Vankemmelbeke, M.; Zhang, Y.; Moore, G. R.; Kleanthous, C.; Penfold, C. N.; James, R. J. Biol. Chem. 2009, 284, 18932
17. Walker, D.; Moore, G. R.; James, R.; Kleanthous, C. Biochemistry 2003, 42, 4161
18. Carr, S.; Walker, D.; James, R.; Kleanthous, C.; Hemmings, A. M. Structure 2000, 8, 949
19. Walker, D.; Lancaster, L.; James, R.; Kleanthous, C. Protein Sci. 2004, 13, 1603
20. Uversky, V. N. Biochim. Biophys. Acta 2013, 1834, 932
21. Marsh, J. A.; Forman-Kay, J. D. Biophys. J. 2010, 98, 2383
22. Tran, H. T.; Mao, A.; Pappu, R. V. J. Am. Chem. Soc. 2008, 130, 7380
23. Muller-Spath, S.; Soranno, A.; Hirschfeld, V.; Hofmann, H.; Ruegger, S.; Reymond, L.; Nettels, D.; Schuler, B. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 14609
24. Jemth, P.; Mu, X.; Engstrom, A.; Dogan, J. J. Biol. Chem. 2014, 289, 5528
25. Shammas, S. L.; Travis, A. J.; Clarke, J. J. Phys. Chem. B 2013, 117, 13346
26. Sugase, K.; Dyson, H. J.; Wright, P. E. Nature 2007, 447, 1021
27. Borg, M.; Mittag, T.; Pawson, T.; Tyers, M.; Forman-Kay, J. D.; Chan, H. S. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 9650
28. Mittag, T.; Orlicky, S.; Choy, W. Y.; Tang, X.; Lin, H.; Sicheri, F.; Kay, L. E.; Tyers, M.; Forman-Kay, J. D. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 17772
29. Chemes, L. B.; Sanchez, I. E.; de Prat-Gay, G. J. Mol. Biol. 2011, 412, 267
30. Dogan, J.; Schmidt, T.; Mu, X.; Engstrom, A.; Jemth, P. J. Biol. Chem. 2012, 287, 34316
31. Ganguly, D.; Otieno, S.; Waddell, B.; Iconaru, L.; Kriwacki, R. W.; Chen, J. J. Mol. Biol. 2012, 422, 674
32. Rogers, J. M.; Steward, A.; Clarke, J. J. Am. Chem. Soc. 2013, 135, 1415
33. Shammas, S. L.; Travis, A. J.; Clarke, J. Proc. Natl. Acad. Sci. U.S.A. 2014, 111, 12055
34. Arai, M.; Ferreon, J. C.; Wright, P. E. J. Am. Chem. Soc. 2012, 134, 3792