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Volumn 23, Issue 22, 2014, Pages 5566-5574

Testing models of speciation from genome sequences: Divergence and asymmetric admixture in Island South-East Asian Sus species during the Plio-Pleistocene climatic fluctuations

Author keywords

conservation genetics; genomics; hybridization; phylogeography; population genetics; speciation

Indexed keywords

SUIDAE; SUS;

EID: 84928321268     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.12958     Document Type: Article
Times cited : (26)

References (43)
  • 1
    • 84867395297 scopus 로고    scopus 로고
    • Impact of wild boar (Sus scrofa) in its introduced and native range: A review
    • Barrios-Garcia MN, Ballari SA, (2012) Impact of wild boar (Sus scrofa) in its introduced and native range: a review. Biological Invasions, 14, 2283-2300.
    • (2012) Biological Invasions , vol.14 , pp. 2283-2300
    • Barrios-Garcia, M.N.1    Ballari, S.A.2
  • 2
    • 24944441725 scopus 로고    scopus 로고
    • Palaeoenvironments of insular Southeast Asia during the Last Glacial Period: A savanna corridor in Sundaland?
    • Bird MI, Taylor D, Hunt C, (2005) Palaeoenvironments of insular Southeast Asia during the Last Glacial Period: a savanna corridor in Sundaland? Quaternary Science Reviews, 24, 2228-2242.
    • (2005) Quaternary Science Reviews , vol.24 , pp. 2228-2242
    • Bird, M.I.1    Taylor, D.2    Hunt, C.3
  • 4
    • 84869031473 scopus 로고    scopus 로고
    • Regions of homozygosity in the porcine genome: Consequence of demography and the recombination landscape
    • Bosse M, Megens H-J, Madsen O, et al,. (2012) Regions of homozygosity in the porcine genome: consequence of demography and the recombination landscape. PLoS Genetics, 8, e1003100.
    • (2012) PLoS Genetics , vol.8 , pp. e1003100
    • Bosse, M.1    Megens, H.-J.2    Madsen, O.3
  • 5
    • 84875987634 scopus 로고    scopus 로고
    • Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution
    • (ed. Nachman M.W.)
    • Cahill JA, Green RE, Fulton TL, et al,. (2013) Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution. (ed., Nachman MW,). PLoS Genetics, 9, e1003345.
    • (2013) PLoS Genetics , vol.9 , pp. e1003345
    • Cahill, J.A.1    Green, R.E.2    Fulton, T.L.3
  • 8
    • 84864833461 scopus 로고    scopus 로고
    • Evolution of ocean temperature and ice volume through the mid-Pleistocene climate transition
    • Elderfield H, Ferretti P, Greaves M, et al,. (2012) Evolution of ocean temperature and ice volume through the mid-Pleistocene climate transition. Science (New York, N.Y.), 337, 704-709.
    • (2012) Science (New York, N.Y.) , vol.337 , pp. 704-709
    • Elderfield, H.1    Ferretti, P.2    Greaves, M.3
  • 9
    • 84884581710 scopus 로고    scopus 로고
    • Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus
    • Frantz LA, Schraiber JG, Madsen O, et al,. (2013) Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus. Genome Biology, 14, R107.
    • (2013) Genome Biology , vol.14 , pp. R107
    • Frantz, L.A.1    Schraiber, J.G.2    Madsen, O.3
  • 11
    • 79959193089 scopus 로고    scopus 로고
    • Rethinking the evolution of extant sub-Saharan African suids (Suidae, Artiodactyla)
    • Gongora J, Cuddahee RE, Nascimento FFD, et al,. (2011) Rethinking the evolution of extant sub-Saharan African suids (Suidae, Artiodactyla). Zoologica Scripta, 40, 327-335.
    • (2011) Zoologica Scripta , vol.40 , pp. 327-335
    • Gongora, J.1    Cuddahee, R.E.2    Nascimento, F.F.D.3
  • 13
    • 84869003221 scopus 로고    scopus 로고
    • Analyses of pig genomes provide insight into porcine demography and evolution
    • Groenen MAM, Archibald AL, Uenishi H, et al,. (2012) Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398.
    • (2012) Nature , vol.491 , pp. 393-398
    • Groenen, M.A.M.1    Archibald, A.L.2    Uenishi, H.3
  • 14
    • 80053386624 scopus 로고    scopus 로고
    • Bayesian inference of ancient human demography from individual genome sequences
    • Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A, (2011) Bayesian inference of ancient human demography from individual genome sequences. Nature Genetics, 43, 1031-1034.
    • (2011) Nature Genetics , vol.43 , pp. 1031-1034
    • Gronau, I.1    Hubisz, M.J.2    Gulko, B.3    Danko, C.G.4    Siepel, A.5
  • 15
    • 0347333184 scopus 로고
    • Of mice and men and pigs in the Indo-Australian Archipelago
    • Groves CP, (1984) Of mice and men and pigs in the Indo-Australian Archipelago. Canberra Anthropology, 7, 1-19.
    • (1984) Canberra Anthropology , vol.7 , pp. 1-19
    • Groves, C.P.1
  • 16
    • 0002244260 scopus 로고    scopus 로고
    • The plate tectonics of Cenozoic SE Asia and the distribution of land and sea
    • (eds Hall R. Holloway J.D.), Backhuys Publishers, Leiden, the Netherlands
    • Hall R, (1998) The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. In: Biogeography and Geological Evolution of SE Asia (eds, Hall R, Holloway JD,), pp. 99-131. Backhuys Publishers, Leiden, the Netherlands.
    • (1998) Biogeography and Geological Evolution of SE Asia , pp. 99-131
    • Hall, R.1
  • 17
    • 84891529646 scopus 로고    scopus 로고
    • Likelihood-based inference of population history from low-coverage de novo genome assemblies
    • Hearn J, Stone GN, Bunnefeld L, et al,. (2014) Likelihood-based inference of population history from low-coverage de novo genome assemblies. Molecular Ecology, 23, 198-211.
    • (2014) Molecular Ecology , vol.23 , pp. 198-211
    • Hearn, J.1    Stone, G.N.2    Bunnefeld, L.3
  • 18
    • 0347723812 scopus 로고    scopus 로고
    • Animal translocation: Long-term human influences on the vertebrate zoogeography of Australasia (natural dispersal versus ethnophoresy)
    • Heinsohn T, (2003) Animal translocation: long-term human influences on the vertebrate zoogeography of Australasia (natural dispersal versus ethnophoresy). Australian Zoologist, 32, 351-376.
    • (2003) Australian Zoologist , vol.32 , pp. 351-376
    • Heinsohn, T.1
  • 19
    • 0034702196 scopus 로고    scopus 로고
    • The genetic legacy of the Quaternary ice ages
    • Hewitt G, (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
    • (2000) Nature , vol.405 , pp. 907-913
    • Hewitt, G.1
  • 21
    • 79955871911 scopus 로고    scopus 로고
    • Quaternary phylogeography: The roots of hybrid zones
    • Hewitt GM, (2011) Quaternary phylogeography: the roots of hybrid zones. Genetica, 139, 617-638.
    • (2011) Genetica , vol.139 , pp. 617-638
    • Hewitt, G.M.1
  • 22
    • 20144362963 scopus 로고    scopus 로고
    • Worldwide phylogeography of wild boar reveals multiple centers of pig domestication
    • Larson G, Dobney K, Albarella U, et al,. (2005) Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science (New York, N.Y.), 307, 1618-1621.
    • (2005) Science (New York, N.Y.) , vol.307 , pp. 1618-1621
    • Larson, G.1    Dobney, K.2    Albarella, U.3
  • 24
    • 84902683108 scopus 로고    scopus 로고
    • Sexual selection against natural hybrids may contribute to reinforcement in a house mouse hybrid zone
    • Latour Y, Perriat-sanguinet M, Caminade P, et al,. (2014) Sexual selection against natural hybrids may contribute to reinforcement in a house mouse hybrid zone. Proceedings. Biological sciences/The Royal Society, 281, 20132733.
    • (2014) Proceedings. Biological Sciences/The Royal Society , vol.281 , pp. 20132733
    • Latour, Y.1    Perriat-Sanguinet, M.2    Caminade, P.3
  • 25
    • 77958184872 scopus 로고    scopus 로고
    • Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
    • Lawniczak MKN, Emrich SJ, Holloway AK, et al,. (2010) Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science (New York, N.Y.), 330, 512-514.
    • (2010) Science (New York, N.Y.) , vol.330 , pp. 512-514
    • Lawniczak, M.K.N.1    Emrich, S.J.2    Holloway, A.K.3
  • 27
    • 84901303939 scopus 로고    scopus 로고
    • Neandertal admixture in Eurasia confirmed by maximum likelihood analysis of three genomes
    • Lohse K, Frantz LAF, (2014) Neandertal admixture in Eurasia confirmed by maximum likelihood analysis of three genomes. Genetics, 196, 1241-1251.
    • (2014) Genetics , vol.196 , pp. 1241-1251
    • Lohse, K.1    Frantz, L.A.F.2
  • 28
    • 81255210687 scopus 로고    scopus 로고
    • A general method for calculating likelihoods under the coalescent process
    • Lohse K, Harrison RJ, Barton NH, (2011) A general method for calculating likelihoods under the coalescent process. Genetics, 189, 977-987.
    • (2011) Genetics , vol.189 , pp. 977-987
    • Lohse, K.1    Harrison, R.J.2    Barton, N.H.3
  • 29
    • 84904469141 scopus 로고    scopus 로고
    • Family Suidae (Pigs)
    • Volume 2 (eds Wilson D.E. Mittermeier R.A.), Lynx Edicions, Barcelona, Spain
    • Meijaard E, d'Huart JP, Oliver WLR, (2011) Family Suidae (Pigs). In: Handbook of the Mammals of the World. Volume 2 (eds, Wilson DE, Mittermeier RA,), pp. 248-291. Lynx Edicions, Barcelona, Spain.
    • (2011) Handbook of the Mammals of the World , pp. 248-291
    • Meijaard, E.1    D'Huart, J.P.2    Oliver, W.L.R.3
  • 30
    • 77954218799 scopus 로고    scopus 로고
    • New evidence for a 67,000-year-old human presence at Callao Cave, Luzon, Philippines
    • Mijares AS, Détroit F, Piper P, et al,. (2010) New evidence for a 67,000-year-old human presence at Callao Cave, Luzon, Philippines. Journal of Human Evolution, 59, 123-132.
    • (2010) Journal of Human Evolution , vol.59 , pp. 123-132
    • Mijares, A.S.1    Détroit, F.2    Piper, P.3
  • 34
    • 84879835308 scopus 로고    scopus 로고
    • Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication
    • Paudel Y, Madsen O, Megens H-J, et al,. (2013) Evolutionary dynamics of copy number variation in pig genomes in the context of adaptation and domestication. BMC Genomics, 14, 449.
    • (2013) BMC Genomics , vol.14 , pp. 449
    • Paudel, Y.1    Madsen, O.2    Megens, H.-J.3
  • 35
    • 78650472000 scopus 로고    scopus 로고
    • Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants
    • Rohland N, Reich D, Mallick S, et al,. (2010) Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants. PLoS Biology, 8, e1000564.
    • (2010) PLoS Biology , vol.8 , pp. e1000564
    • Rohland, N.1    Reich, D.2    Mallick, S.3
  • 36
    • 34249022624 scopus 로고    scopus 로고
    • Molecular biogeography of Europe: Pleistocene cycles and postglacial trends
    • Schmitt T, (2007) Molecular biogeography of Europe: pleistocene cycles and postglacial trends. Frontiers in Zoology, 4, 11.
    • (2007) Frontiers in Zoology , vol.4 , pp. 11
    • Schmitt, T.1
  • 40
    • 84868704770 scopus 로고    scopus 로고
    • A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content
    • Tortereau F, Servin B, Frantz L, et al,. (2012) A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content. BMC Genomics, 13, 586.
    • (2012) BMC Genomics , vol.13 , pp. 586
    • Tortereau, F.1    Servin, B.2    Frantz, L.3
  • 41
    • 0034492377 scopus 로고    scopus 로고
    • Maps of Pleistocene sea levels in Southeast Asia: Shorelines, river systems and time durations
    • Voris HK, (2000) Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. Journal of Biogeography, 27, 1153-1167.
    • (2000) Journal of Biogeography , vol.27 , pp. 1153-1167
    • Voris, H.K.1


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