-
1
-
-
34848827224
-
Patterns of damage in genomic DNA sequences from a Neandertal
-
Briggs, A. W., U. Stenzel, P. L. F. Johnson, R. E. Green, J. Kelso et al., 2007 Patterns of damage in genomic DNA sequences from a Neandertal. Proc. Natl. Acad. Sci. USA 104(37): 14616-14621.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, Issue.37
, pp. 14616-14621
-
-
Briggs, A.W.1
Stenzel, U.2
Johnson, P.L.F.3
Green, R.E.4
Kelso, J.5
-
2
-
-
84880786191
-
Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes
-
Cui, R., M. Schumer, K. Kruesi, R. Walter, P. Andolfatto et al., 2013 Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes. Evolution 67(8): 2166-2179.
-
(2013)
Evolution
, vol.67
, Issue.8
, pp. 2166-2179
-
-
Cui, R.1
Schumer, M.2
Kruesi, K.3
Walter, R.4
Andolfatto, P.5
-
3
-
-
79961039058
-
Testing for ancient admixture between closely related populations
-
Durand, E. Y., N. Patterson, and D. Reich, and M. Slatkin, 2011 Testing for ancient admixture between closely related populations. Mol. Biol. Evol. 28(8): 2239-2252.
-
(2011)
Mol. Biol. Evol.
, vol.28
, Issue.8
, pp. 2239-2252
-
-
Durand, E.Y.1
Patterson, N.2
Reich, D.3
Slatkin, M.4
-
4
-
-
84881616406
-
Inferring phylogeny and introgression using RADseq data: An example from flowering plants (Pedicularis: Orobanchaceae)
-
Eaton, D. A. R., and R. H. Ree, 2013 Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae). Syst. Biol. 62: 689-706.
-
(2013)
Syst. Biol.
, vol.62
, pp. 689-706
-
-
Eaton, D.A.R.1
Ree, R.H.2
-
5
-
-
0004128472
-
-
Cambridge University Press, Cambridge, UK
-
Edwards, A. W. F., 1972 Likelihood. Cambridge University Press, Cambridge, UK.
-
(1972)
Likelihood
-
-
Edwards, A.W.F.1
-
6
-
-
84865538153
-
Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins
-
Eriksson, A., and A. Manica, 2012 Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins. Proc. Natl. Acad. Sci. USA. 109: 13956-13960.
-
(2012)
Proc. Natl. Acad. Sci. USA.
, vol.109
, pp. 13956-13960
-
-
Eriksson, A.1
Manica, A.2
-
7
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Felsenstein, J., 1988 Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22: 521-565.
-
(1988)
Annu. Rev. Genet.
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
8
-
-
84884581710
-
Genome sequencing reveals fine scale diversification and reticulation history during speciation
-
Frantz, L., J. G. Schraiber, O. Madsen, and H. J. Megens, M. Bosse et al., 2013 Genome sequencing reveals fine scale diversification and reticulation history during speciation. Genome Biol. 14: R107.
-
(2013)
Genome Biol.
, vol.14
-
-
Frantz, L.1
Schraiber, J.G.2
Madsen, O.3
Megens, H.J.4
Bosse, M.5
-
9
-
-
77952136530
-
A draft sequence of the Neanderthal genome
-
Green, R. E., J. Krause, A. W. Briggs, T. Maricic, U. Stenzel et al., 2010 A draft sequence of the Neanderthal genome. Science 328(5979): 710-722.
-
(2010)
Science
, vol.328
, Issue.5979
, pp. 710-722
-
-
Green, R.E.1
Krause, J.2
Briggs, A.W.3
Maricic, T.4
Stenzel, U.5
-
10
-
-
84863496231
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
-
Heliconius Genome Consortium
-
Heliconius Genome Consortium, 2012 Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature 487: 94-98.
-
(2012)
Nature
, vol.487
, pp. 94-98
-
-
-
11
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson, R. R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
Hudson, R.R.1
-
12
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
Hudson, R. R., and N. L. Kaplan, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
-
(1985)
Genetics
, vol.111
, pp. 147-164
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
13
-
-
68249090481
-
The genomics of speciation in Drosophila: Diversity, divergence, and introgression estimated using low-coverage genome sequencing
-
Kulathinal, R. J., L. S. Stevison, and M. A. F. Noor, 2009 The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing. PLoS Genet. 5(7): e1000550.
-
(2009)
PLoS Genet.
, vol.5
, Issue.7
-
-
Kulathinal, R.J.1
Stevison, L.S.2
Noor, M.A.F.3
-
14
-
-
77958184872
-
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
-
Lawniczak, M. K. N., S. J. Emrich, A. K. Holloway, A. P. Regier, M. Olson et al., 2010 Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science 330(6003): 512-514.
-
(2010)
Science
, vol.330
, Issue.6003
, pp. 512-514
-
-
Lawniczak, M.K.N.1
Emrich, S.J.2
Holloway, A.K.3
Regier, A.P.4
Olson, M.5
-
15
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li, H., and R. Durbin, 2011 Inference of human population history from individual whole-genome sequences. Nature 475(7357): 493-496.
-
(2011)
Nature
, vol.475
, Issue.7357
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
17
-
-
81255210687
-
A general method for calculating likelihoods under the coalescent process
-
Lohse, K., R. J. Harrison, and N. H. Barton, 2011 A general method for calculating likelihoods under the coalescent process. Genetics 58: 977-987.
-
(2011)
Genetics
, vol.58
, pp. 977-987
-
-
Lohse, K.1
Harrison, R.J.2
Barton, N.H.3
-
18
-
-
84891554185
-
A likelihood-based comparison of population histories in a parasitoid guild
-
Lohse, K., N. H. Barton, N. Melika, and G. N. Stone, 2012 A likelihood-based comparison of population histories in a parasitoid guild. Mol. Ecol. 49(3): 832-842.
-
(2012)
Mol. Ecol.
, vol.49
, Issue.3
, pp. 832-842
-
-
Lohse, K.1
Barton, N.H.2
Melika, N.3
Stone, G.N.4
-
19
-
-
84886085175
-
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
-
Martin, S. H., K. K. Dasmahapatra, N. J. Nadeau, C. Salazar, J. R. Walters et al., 2013 Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Res. 23: 1817-1828.
-
(2013)
Genome Res.
, vol.23
, pp. 1817-1828
-
-
Martin, S.H.1
Dasmahapatra, K.K.2
Nadeau, N.J.3
Salazar, C.4
Walters, J.R.5
-
21
-
-
0034967295
-
Distinguishing migration from isolation: A Markov chain Monte Carlo approach
-
Nielsen, R., and J. Wakeley, 2001 Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158: 885-896.
-
(2001)
Genetics
, vol.158
, pp. 885-896
-
-
Nielsen, R.1
Wakeley, J.2
-
22
-
-
33745591114
-
Genetic evidence for complex speciation of humans and chimpanzees
-
Patterson, N., D. J. Richter, S. Gnerre, E. S. Lander, and D. Reich, 2006 Genetic evidence for complex speciation of humans and chimpanzees. Nature 441(7097): 1103-1108.
-
(2006)
Nature
, vol.441
, Issue.7097
, pp. 1103-1108
-
-
Patterson, N.1
Richter, D.J.2
Gnerre, S.3
Lander, E.S.4
Reich, D.5
-
23
-
-
84878314759
-
The geography of recent genetic ancestry across Europe
-
Ralph, P., and G. Coop, 2013 The geography of recent genetic ancestry across Europe. PLoS Biol. 11(5): e1001555.
-
(2013)
PLoS Biol.
, vol.11
, Issue.5
-
-
Ralph, P.1
Coop, G.2
-
24
-
-
0001915002
-
Information and the accuracy attainable in the estimation of statistical parameters
-
Rao, C. R., 1945 Information and the accuracy attainable in the estimation of statistical parameters. Bull. Calcutta Math. Soc. 37: 81-89.
-
(1945)
Bull. Calcutta Math. Soc.
, vol.37
, pp. 81-89
-
-
Rao, C.R.1
-
25
-
-
84868089030
-
The date of interbreeding between neandertals and modern humans
-
Sankararaman, S., N. Patterson, H Li, S. Pääbo, and D. Reich, 2012 The date of interbreeding between neandertals and modern humans. PLoS Genet. 8(10): e1002947.
-
(2012)
PLoS Genet.
, vol.8
, Issue.10
-
-
Sankararaman, S.1
Patterson, N.2
Li, H.3
Pääbo, S.4
Reich, D.5
-
26
-
-
52449121772
-
Subdivision in an ancestral species creates asymmetry in gene trees
-
Slatkin, M., and J. L. Pollack, 2008 Subdivision in an ancestral species creates asymmetry in gene trees. Mol. Biol. Evol. 25(10): 2241-2246.
-
(2008)
Mol. Biol. Evol.
, vol.25
, Issue.10
, pp. 2241-2246
-
-
Slatkin, M.1
Pollack, J.L.2
-
27
-
-
0037277564
-
Estimating ancestral population sizes and divergence times
-
Wall, J. D., 2003 Estimating ancestral population sizes and divergence times. Genetics 163: 395-404.
-
(2003)
Genetics
, vol.163
, pp. 395-404
-
-
Wall, J.D.1
-
28
-
-
84877090690
-
Higher levels of Neanderthal ancestry in East Asians than in Europeans
-
Wall, J. D., M. A. Yang, F. Jay, S. K. Kim, E. Y. Durand et al., 2013 Higher levels of Neanderthal ancestry in East Asians than in Europeans. Genetics 194: 199-209.
-
(2013)
Genetics
, vol.194
, pp. 199-209
-
-
Wall, J.D.1
Yang, M.A.2
Jay, F.3
Kim, S.K.4
Durand, E.Y.5
-
29
-
-
77749261628
-
Estimating divergence parameters with small samples from a large number of loci
-
Wang, Y., and J. Hey, 2010 Estimating divergence parameters with small samples from a large number of loci. Genetics 184: 363-373.
-
(2010)
Genetics
, vol.184
, pp. 363-373
-
-
Wang, Y.1
Hey, J.2
-
30
-
-
39149111906
-
The distribution of the coalescence time and the number of pairwise nucleotide differences in the "isolation with migration" model
-
Wilkinson-Herbots, H. M., 2008 The distribution of the coalescence time and the number of pairwise nucleotide differences in the "isolation with migration" model. Theor. Popul. Biol. 73(2): 277-288.
-
(2008)
Theor. Popul. Biol.
, vol.73
, Issue.2
, pp. 277-288
-
-
Wilkinson-Herbots, H.M.1
-
31
-
-
79952619978
-
-
Wolfram Research, Wolfram Research, Champaign, IL
-
Wolfram Research, 2010 Mathematica, Version 8.0. Wolfram Research, Champaign, IL.
-
(2010)
Mathematica, Version 8.0
-
-
-
32
-
-
84866943935
-
Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity
-
Yang, M. A., and A.-S. Malaspinas, E. Y. Durand, and M. Slatkin, 2012 Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity. Mol. Biol. Evol. 29(10): 2987-2995.
-
(2012)
Mol. Biol. Evol.
, vol.29
, Issue.10
, pp. 2987-2995
-
-
Yang, M.A.1
Malaspinas, A.-S.2
Durand, E.Y.3
Slatkin, M.4
-
33
-
-
0036961518
-
Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci
-
Yang, Z., 2002 Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci. Genetics 162: 1811-1823.
-
(2002)
Genetics
, vol.162
, pp. 1811-1823
-
-
Yang, Z.1
-
34
-
-
84979905821
-
Maximum likelihood implementation if an isolation-with-migration model with three species for testing speciation with gene flow
-
Zhu, T., and Z. Yang, 2012 Maximum likelihood implementation if an isolation-with-migration model with three species for testing speciation with gene flow. Mol. Biol. Evol. 49(3): 832-842.
-
(2012)
Mol. Biol. Evol.
, vol.49
, Issue.3
, pp. 832-842
-
-
Zhu, T.1
Yang, Z.2
|