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Volumn 17, Issue 5, 2015, Pages 1707-1720

The nexus of syntrophy-associated microbiota in anaerobic digestion revealed by long-term enrichment and community survey

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOBACTERIA; BACTEROIDETES; CHLOROFLEXI; CHLOROFLEXI (CLASS); FIRMICUTES;

EID: 84928253889     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.12616     Document Type: Article
Times cited : (141)

References (86)
  • 2
    • 0035092506 scopus 로고    scopus 로고
    • Development of anaerobic migrating blanket reactor (AMBR), a novel anaerobic treatment system
    • Angenent, L.T., and Sung, S.W. (2001) Development of anaerobic migrating blanket reactor (AMBR), a novel anaerobic treatment system. Water Res 35: 1739-1747.
    • (2001) Water Res , vol.35 , pp. 1739-1747
    • Angenent, L.T.1    Sung, S.W.2
  • 3
    • 33749537491 scopus 로고    scopus 로고
    • Treatment of high-strength dairy wastewater in an anaerobic deep reservoir: analysis of the methanogenic fermentation pathway and the rate-limiting step
    • Arbeli, Z., Brenner, A., and Abeliovich, A. (2006) Treatment of high-strength dairy wastewater in an anaerobic deep reservoir: analysis of the methanogenic fermentation pathway and the rate-limiting step. Water Res 40: 3653-3659.
    • (2006) Water Res , vol.40 , pp. 3653-3659
    • Arbeli, Z.1    Brenner, A.2    Abeliovich, A.3
  • 4
    • 33847631292 scopus 로고    scopus 로고
    • Functional bacterial and archaeal community structures of major trophic groups in a full-scale anaerobic sludge digester
    • Ariesyady, H.D., Ito, T., and Okabe, S. (2007) Functional bacterial and archaeal community structures of major trophic groups in a full-scale anaerobic sludge digester. Water Res 41: 1554-1568.
    • (2007) Water Res , vol.41 , pp. 1554-1568
    • Ariesyady, H.D.1    Ito, T.2    Okabe, S.3
  • 5
    • 0032194380 scopus 로고    scopus 로고
    • Aminobacterium colombiense gen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge
    • Baena, S., Fardeau, M.L., Labat, M., Ollivier, B., Thomas, P., Garcia, J.L., and Patel, B.K.C. (1998) Aminobacterium colombiense gen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. Anaerobe 4: 241-250.
    • (1998) Anaerobe , vol.4 , pp. 241-250
    • Baena, S.1    Fardeau, M.L.2    Labat, M.3    Ollivier, B.4    Thomas, P.5    Garcia, J.L.6    Patel, B.K.C.7
  • 6
    • 0036021956 scopus 로고    scopus 로고
    • Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor
    • Balk, M., Weijma, J., and Stams, A.J. (2002) Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor. Int J Syst Evol Microbiol 52: 1361-1368.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 1361-1368
    • Balk, M.1    Weijma, J.2    Stams, A.J.3
  • 7
    • 84867594889 scopus 로고    scopus 로고
    • Microbial community structure and dynamics in anaerobic fluidized-bed and granular sludge-bed reactors: influence of operational temperature and reactor configuration
    • Bialek, K., Kumar, A., Mahony, T., Lens, P.N.L., and O'Flaherty, V. (2012) Microbial community structure and dynamics in anaerobic fluidized-bed and granular sludge-bed reactors: influence of operational temperature and reactor configuration. Microb Biotechnol 5: 738-752.
    • (2012) Microb Biotechnol , vol.5 , pp. 738-752
    • Bialek, K.1    Kumar, A.2    Mahony, T.3    Lens, P.N.L.4    O'Flaherty, V.5
  • 11
    • 6444221170 scopus 로고    scopus 로고
    • Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate
    • Chen, C.L., Macarie, H., Ramirez, I., Olmos, A., Ong, S.L., Monroy, O., and Liu, W.T. (2004) Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate. Microbiology-SGM 150: 3429-3440.
    • (2004) Microbiology-SGM , vol.150 , pp. 3429-3440
    • Chen, C.L.1    Macarie, H.2    Ramirez, I.3    Olmos, A.4    Ong, S.L.5    Monroy, O.6    Liu, W.T.7
  • 12
    • 41949111897 scopus 로고    scopus 로고
    • Identification of important microbial populations in the mesophilic and thermophilic phenol-degrading methanogenic consortia
    • Chen, C.L., Wu, J.H., and Liu, W.T. (2008) Identification of important microbial populations in the mesophilic and thermophilic phenol-degrading methanogenic consortia. Water Res 42: 1963-1976.
    • (2008) Water Res , vol.42 , pp. 1963-1976
    • Chen, C.L.1    Wu, J.H.2    Liu, W.T.3
  • 13
    • 70349917803 scopus 로고    scopus 로고
    • Characterization of active microbes in a full-scale anaerobic fluidized bed reactor treating phenolic wastewater
    • Chen, C.L., Wu, J.H., Tseng, I.C., Liang, T.M., and Liu, W.T. (2009) Characterization of active microbes in a full-scale anaerobic fluidized bed reactor treating phenolic wastewater. Microbes Environ 24: 144-153.
    • (2009) Microbes Environ , vol.24 , pp. 144-153
    • Chen, C.L.1    Wu, J.H.2    Tseng, I.C.3    Liang, T.M.4    Liu, W.T.5
  • 14
    • 27844561449 scopus 로고    scopus 로고
    • Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater
    • Chen, S.Y., and Dong, X.Z. (2005) Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater. Int J Syst Evol Microbiol 55: 2257-2261.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2257-2261
    • Chen, S.Y.1    Dong, X.Z.2
  • 15
    • 84861336492 scopus 로고    scopus 로고
    • The performance enhancements of upflow anaerobic sludge blanket (UASB) reactors for domestic sludge treatment - a State-of-the-art review
    • Chong, S.H., Sen, T.K., Kayaalp, A., and Ang, H.M. (2012) The performance enhancements of upflow anaerobic sludge blanket (UASB) reactors for domestic sludge treatment - a State-of-the-art review. Water Res 46: 3434-3470.
    • (2012) Water Res , vol.46 , pp. 3434-3470
    • Chong, S.H.1    Sen, T.K.2    Kayaalp, A.3    Ang, H.M.4
  • 16
    • 22744444875 scopus 로고    scopus 로고
    • Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester
    • Chouari, R., Le Paslier, D., Daegelen, P., Ginestet, P., Weissenbach, J., and Sghir, A. (2005a) Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 7: 1104-1115.
    • (2005) Environ Microbiol , vol.7 , pp. 1104-1115
    • Chouari, R.1    Le Paslier, D.2    Daegelen, P.3    Ginestet, P.4    Weissenbach, J.5    Sghir, A.6
  • 18
    • 58149200948 scopus 로고    scopus 로고
    • The ribosomal database project: improved alignments and new tools for rRNA analysis
    • Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., etal. (2009) The ribosomal database project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37 , pp. D141-D145
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 20
    • 33746071943 scopus 로고    scopus 로고
    • Phenotypic properties and microbial diversity of methanogenic granules from a full-scale upflow anaerobic sludge bed reactor treating brewery wastewater
    • Diaz, E.E., Stams, A.J.A., Amils, R., and Sanz, J.L. (2006) Phenotypic properties and microbial diversity of methanogenic granules from a full-scale upflow anaerobic sludge bed reactor treating brewery wastewater. Appl Environ Microbiol 72: 4942-4949.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4942-4949
    • Diaz, E.E.1    Stams, A.J.A.2    Amils, R.3    Sanz, J.L.4
  • 22
    • 84928227532 scopus 로고    scopus 로고
    • DSMZ (2014). Catalogue of microoganisms. URL http://www.dsmz.de/catalogues/catalogue-microorganisms.html.
    • (2014) Catalogue of microoganisms
  • 23
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R.C. (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 24
    • 0024217234 scopus 로고
    • Ecological study on anaerobic sludge bulking caused by filamentous bacterial-growth in an anaerobic contact process
    • Endo, G., and Tohya, Y. (1988) Ecological study on anaerobic sludge bulking caused by filamentous bacterial-growth in an anaerobic contact process. Water Sci Technol 20: 205-211.
    • (1988) Water Sci Technol , vol.20 , pp. 205-211
    • Endo, G.1    Tohya, Y.2
  • 25
    • 0000461280 scopus 로고
    • Confidence-limits on phylogenies - an approach using the bootstrap
    • Felsenstein, J. (1985) Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 26
    • 44949146472 scopus 로고    scopus 로고
    • Analysis of microbial community during biofilm development in an anaerobic wastewater treatment reactor
    • Fernandez, N., Diaz, E.E., Amils, R., and Sanz, J.L. (2008) Analysis of microbial community during biofilm development in an anaerobic wastewater treatment reactor. Microb Ecol 56: 121-132.
    • (2008) Microb Ecol , vol.56 , pp. 121-132
    • Fernandez, N.1    Diaz, E.E.2    Amils, R.3    Sanz, J.L.4
  • 27
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon, J.J., Zumstein, E., Dabert, P., Habouzit, F., and Moletta, R. (1997) Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63: 2802-2813.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2802-2813
    • Godon, J.J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 28
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I.J. (1953) The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 29
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Haas, B.J., Gevers, D., Earl, A.M., Feldgarden, M., Ward, D.V., Giannoukos, G., etal. (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5    Giannoukos, G.6
  • 30
    • 73449128271 scopus 로고    scopus 로고
    • Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
    • Hamady, M., Lozupone, C., and Knight, R. (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
    • (2010) ISME J , vol.4 , pp. 17-27
    • Hamady, M.1    Lozupone, C.2    Knight, R.3
  • 31
    • 34848885254 scopus 로고    scopus 로고
    • Syntrophomonas palmitatica sp. nov., an anaerobic, syntrophic, long-chain fatty-acid-oxidizing bacterium isolated from methanogenic sludge
    • Hatamoto, M., Imachi, H., Fukayo, S., Ohashi, A., and Harada, H. (2007) Syntrophomonas palmitatica sp. nov., an anaerobic, syntrophic, long-chain fatty-acid-oxidizing bacterium isolated from methanogenic sludge. Int J Syst Evol Microbiol 57: 2137-2142.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2137-2142
    • Hatamoto, M.1    Imachi, H.2    Fukayo, S.3    Ohashi, A.4    Harada, H.5
  • 32
    • 0033858846 scopus 로고    scopus 로고
    • Thermacetogenium phaeum gen. nov., sp nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium
    • Hattori, S., Kamagata, Y., Hanada, S., and Shoun, H. (2000) Thermacetogenium phaeum gen. nov., sp nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium. Int J Syst Evol Microbiol 50: 1601-1609.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1601-1609
    • Hattori, S.1    Kamagata, Y.2    Hanada, S.3    Shoun, H.4
  • 33
    • 33144462974 scopus 로고    scopus 로고
    • Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester
    • Hori, T., Haruta, S., Ueno, Y., Ishii, M., and Igarashi, Y. (2006) Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester. Appl Environ Microbiol 72: 1623-1630.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1623-1630
    • Hori, T.1    Haruta, S.2    Ueno, Y.3    Ishii, M.4    Igarashi, Y.5
  • 34
    • 33846158810 scopus 로고    scopus 로고
    • Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA
    • Hori, T., Noll, M., Igarashi, Y., Friedrich, M.W., and Conrad, R. (2007) Identification of acetate-assimilating microorganisms under methanogenic conditions in anoxic rice field soil by comparative stable isotope probing of RNA. Appl Environ Microbiol 73: 101-109.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 101-109
    • Hori, T.1    Noll, M.2    Igarashi, Y.3    Friedrich, M.W.4    Conrad, R.5
  • 35
    • 40449132267 scopus 로고    scopus 로고
    • Methanolinea tarda gen. nov., sp nov., a methane-producing archaeon isolated from a methanogenic digester sludge
    • Imachi, H., Sakai, S., Sekiguchi, Y., Hanada, S., Kamagata, Y., Ohashi, A., and Harada, H. (2008) Methanolinea tarda gen. nov., sp nov., a methane-producing archaeon isolated from a methanogenic digester sludge. Int J Syst Evol Microbiol 58: 294-301.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 294-301
    • Imachi, H.1    Sakai, S.2    Sekiguchi, Y.3    Hanada, S.4    Kamagata, Y.5    Ohashi, A.6    Harada, H.7
  • 36
    • 81855185536 scopus 로고    scopus 로고
    • Identification of a novel acetate-utilizing bacterium belonging to Synergistes group 4 in anaerobic digester sludge
    • Ito, T., Yoshiguchi, K., Ariesyady, H.D., and Okabe, S. (2011) Identification of a novel acetate-utilizing bacterium belonging to Synergistes group 4 in anaerobic digester sludge. ISME J 5: 1844-1856.
    • (2011) ISME J , vol.5 , pp. 1844-1856
    • Ito, T.1    Yoshiguchi, K.2    Ariesyady, H.D.3    Okabe, S.4
  • 37
    • 84865543454 scopus 로고    scopus 로고
    • Identification and quantification of key microbial trophic groups of methanogenic glucose degradation in an anaerobic digester sludge
    • Ito, T., Yoshiguchi, K., Ariesyady, H.D., and Okabe, S. (2012) Identification and quantification of key microbial trophic groups of methanogenic glucose degradation in an anaerobic digester sludge. Bioresour Technol 123: 599-607.
    • (2012) Bioresour Technol , vol.123 , pp. 599-607
    • Ito, T.1    Yoshiguchi, K.2    Ariesyady, H.D.3    Okabe, S.4
  • 38
    • 84861141195 scopus 로고    scopus 로고
    • Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates
    • Kampmann, K., Ratering, S., Kramer, I., Schmidt, M., Zerr, W., and Schnell, S. (2012) Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl Environ Microbiol 78: 2106-2119.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 2106-2119
    • Kampmann, K.1    Ratering, S.2    Kramer, I.3    Schmidt, M.4    Zerr, W.5    Schnell, S.6
  • 40
    • 84904790255 scopus 로고    scopus 로고
    • Anaerobic digestion and gasification coupling for wastewater sludge treatment and recovery
    • Lacroix, N., Rousse, D.R., and Hausler, R. (2014) Anaerobic digestion and gasification coupling for wastewater sludge treatment and recovery. Waste Manag Res 32: 608-613.
    • (2014) Waste Manag Res , vol.32 , pp. 608-613
    • Lacroix, N.1    Rousse, D.R.2    Hausler, R.3
  • 41
    • 80052267558 scopus 로고    scopus 로고
    • Integrated application of upflow anaerobic sludge blanket reactor for the treatment of wastewaters
    • Latif, M.A., Ghufran, R., Wahid, Z.A., and Ahmad, A. (2011) Integrated application of upflow anaerobic sludge blanket reactor for the treatment of wastewaters. Water Res 45: 4683-4699.
    • (2011) Water Res , vol.45 , pp. 4683-4699
    • Latif, M.A.1    Ghufran, R.2    Wahid, Z.A.3    Ahmad, A.4
  • 42
    • 84883597098 scopus 로고    scopus 로고
    • Distribution and abundance of Spirochaetes in full-scale anaerobic digesters
    • Lee, S.H., Park, J.H., Kang, H.J., Lee, Y.H., Lee, T.J., and Park, H.D. (2013) Distribution and abundance of Spirochaetes in full-scale anaerobic digesters. Bioresour Technol 145: 25-32.
    • (2013) Bioresour Technol , vol.145 , pp. 25-32
    • Lee, S.H.1    Park, J.H.2    Kang, H.J.3    Lee, Y.H.4    Lee, T.J.5    Park, H.D.6
  • 43
    • 0028887804 scopus 로고
    • Anaerobic digestion and wastewater treatment systems
    • Lettinga, G. (1995) Anaerobic digestion and wastewater treatment systems. Antonie Van Leeuwenhoek 67: 3-28.
    • (1995) Antonie Van Leeuwenhoek , vol.67 , pp. 3-28
    • Lettinga, G.1
  • 44
    • 77950360583 scopus 로고    scopus 로고
    • Bacterial community structure and diversity during establishment of an anaerobic bioreactor to treat swine wastewater
    • Li, P., Wang, Y.X., Wang, Y.H., Liu, K., and Tong, L. (2010) Bacterial community structure and diversity during establishment of an anaerobic bioreactor to treat swine wastewater. Water Sci Technol 61: 243-252.
    • (2010) Water Sci Technol , vol.61 , pp. 243-252
    • Li, P.1    Wang, Y.X.2    Wang, Y.H.3    Liu, K.4    Tong, L.5
  • 46
    • 84855309151 scopus 로고    scopus 로고
    • Acidogenic fermentation of proteinaceous sewage sludge: effect of pH
    • Liu, H., Wang, J., Liu, X.L., Fu, B., Chen, J., and Yu, H.Q. (2012) Acidogenic fermentation of proteinaceous sewage sludge: effect of pH. Water Res 46: 799-807.
    • (2012) Water Res , vol.46 , pp. 799-807
    • Liu, H.1    Wang, J.2    Liu, X.L.3    Fu, B.4    Chen, J.5    Yu, H.Q.6
  • 47
    • 41349083576 scopus 로고    scopus 로고
    • Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea
    • Liu, Y.C., and Whitman, W.B. (2008) Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Ann N Y Acad Sci 1125: 171-189.
    • (2008) Ann N Y Acad Sci , vol.1125 , pp. 171-189
    • Liu, Y.C.1    Whitman, W.B.2
  • 49
    • 78650601515 scopus 로고    scopus 로고
    • Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium
    • Lykidis, A., Chen, C.L., Tringe, S.G., McHardy, A.C., Copeland, A., Kyrpides, N.C., etal. (2011) Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME J 5: 122-130.
    • (2011) ISME J , vol.5 , pp. 122-130
    • Lykidis, A.1    Chen, C.L.2    Tringe, S.G.3    McHardy, A.C.4    Copeland, A.5    Kyrpides, N.C.6
  • 50
    • 84857122937 scopus 로고    scopus 로고
    • An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
    • McDonald, D., Price, M.N., Goodrich, J., Nawrocki, E.P., DeSantis, T.Z., Probst, A., etal. (2012) An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 6: 610-618.
    • (2012) ISME J , vol.6 , pp. 610-618
    • McDonald, D.1    Price, M.N.2    Goodrich, J.3    Nawrocki, E.P.4    DeSantis, T.Z.5    Probst, A.6
  • 52
    • 0000250928 scopus 로고
    • Kinetics of acetate utilization by two thermophilic acetotrophic methanogens - Methanosarcina sp. strain CALS-1 and Methanothrix sp strain CALS-1
    • Min, H., and Zinder, S.H. (1989) Kinetics of acetate utilization by two thermophilic acetotrophic methanogens - Methanosarcina sp. strain CALS-1 and Methanothrix sp strain CALS-1. Appl Environ Microbiol 55: 488-491.
    • (1989) Appl Environ Microbiol , vol.55 , pp. 488-491
    • Min, H.1    Zinder, S.H.2
  • 53
    • 34249939324 scopus 로고    scopus 로고
    • Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update
    • Narihiro, T., and Sekiguchi, Y. (2007) Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update. Curr Opin Biotechnol 18: 273-278.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 273-278
    • Narihiro, T.1    Sekiguchi, Y.2
  • 54
    • 67349177071 scopus 로고    scopus 로고
    • Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method
    • Narihiro, T., Terada, T., Ohashi, A., Wu, J.H., Liu, W.T., Araki, N., etal. (2009a) Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method. ISME J 3: 522-535.
    • (2009) ISME J , vol.3 , pp. 522-535
    • Narihiro, T.1    Terada, T.2    Ohashi, A.3    Wu, J.H.4    Liu, W.T.5    Araki, N.6
  • 55
    • 70349920944 scopus 로고    scopus 로고
    • Comparative analysis of bacterial and archaeal communities in methanogenic sludge granules from upflow anaerobic sludge blanket reactors treating various food-processing, high-strength organic wastewaters
    • Narihiro, T., Terada, T., Kikuchi, K., Iguchi, A., Ikeda, M., Yamauchi, T., etal. (2009b) Comparative analysis of bacterial and archaeal communities in methanogenic sludge granules from upflow anaerobic sludge blanket reactors treating various food-processing, high-strength organic wastewaters. Microbes Environ 24: 88-96.
    • (2009) Microbes Environ , vol.24 , pp. 88-96
    • Narihiro, T.1    Terada, T.2    Kikuchi, K.3    Iguchi, A.4    Ikeda, M.5    Yamauchi, T.6
  • 56
    • 78651500184 scopus 로고    scopus 로고
    • A meta-analysis of the microbial diversity observed in anaerobic digesters
    • Nelson, M.C., Morrison, M., and Yu, Z.T. (2011) A meta-analysis of the microbial diversity observed in anaerobic digesters. Bioresour Technol 102: 3730-3739.
    • (2011) Bioresour Technol , vol.102 , pp. 3730-3739
    • Nelson, M.C.1    Morrison, M.2    Yu, Z.T.3
  • 57
    • 84955719113 scopus 로고    scopus 로고
    • The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
    • in press.
    • Nobu, M.K., Narihiro, T., Hideyuki, T., Qiu, Y.L., Sekiguchi, Y., Woyke, T., etal. (2014a) The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow. Environ Microbiol doi:10.1111/1462-2920.12444; in press.
    • (2014) Environ Microbiol
    • Nobu, M.K.1    Narihiro, T.2    Hideyuki, T.3    Qiu, Y.L.4    Sekiguchi, Y.5    Woyke, T.6
  • 58
    • 84998692981 scopus 로고    scopus 로고
    • Draft genome sequence of Syntrophorhabdus aromaticivorans strain UI, a mesophilic aromatic compound-degrading syntroph
    • Nobu, M.K., Narihiro, T., Tamaki, H., Qiu, Y.L., Sekiguchi, Y., Woyke, T., etal. (2014b) Draft genome sequence of Syntrophorhabdus aromaticivorans strain UI, a mesophilic aromatic compound-degrading syntroph. Genome Announc 2: e01064-e01113.
    • (2014) Genome Announc , vol.2 , pp. e01064-e01113
    • Nobu, M.K.1    Narihiro, T.2    Tamaki, H.3    Qiu, Y.L.4    Sekiguchi, Y.5    Woyke, T.6
  • 59
    • 84867638150 scopus 로고    scopus 로고
    • Microbial community structure and performance of an anaerobic reactor digesting cassava pulp and pig manure
    • Panichnumsin, P., Ahring, B., Nopharatana, A., and Chaiprasert, P. (2012) Microbial community structure and performance of an anaerobic reactor digesting cassava pulp and pig manure. Water Sci Technol 66: 1590-1600.
    • (2012) Water Sci Technol , vol.66 , pp. 1590-1600
    • Panichnumsin, P.1    Ahring, B.2    Nopharatana, A.3    Chaiprasert, P.4
  • 60
    • 80053552351 scopus 로고    scopus 로고
    • Comparative 16S rRNA gene surveys of granular sludge from three upflow anaerobic bioreactors treating purified terephthalic acid (PTA) wastewater
    • Perkins, S.D., Scalfone, N.B., and Angenent, L.T. (2011) Comparative 16S rRNA gene surveys of granular sludge from three upflow anaerobic bioreactors treating purified terephthalic acid (PTA) wastewater. Water Sci Technol 64: 1406-1412.
    • (2011) Water Sci Technol , vol.64 , pp. 1406-1412
    • Perkins, S.D.1    Scalfone, N.B.2    Angenent, L.T.3
  • 62
    • 67549099704 scopus 로고    scopus 로고
    • Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
    • Riviere, D., Desvignes, V., Pelletier, E., Chaussonnerie, S., Guermazi, S., Weissenbach, J., etal. (2009) Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 3: 700-714.
    • (2009) ISME J , vol.3 , pp. 700-714
    • Riviere, D.1    Desvignes, V.2    Pelletier, E.3    Chaussonnerie, S.4    Guermazi, S.5    Weissenbach, J.6
  • 63
    • 0023375195 scopus 로고
    • The neighbor-joining method - a new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987) The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 65
    • 84861884844 scopus 로고    scopus 로고
    • Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales
    • Sakai, S., Ehara, M., Tseng, I.C., Yamaguchi, T., Brauer, S.L., Cadillo-Quiroz, H., etal. (2012) Methanolinea mesophila sp. nov., a hydrogenotrophic methanogen isolated from rice field soil, and proposal of the archaeal family Methanoregulaceae fam. nov. within the order Methanomicrobiales. Int J Syst Evol Microbiol 62: 1389-1395.
    • (2012) Int J Syst Evol Microbiol , vol.62 , pp. 1389-1395
    • Sakai, S.1    Ehara, M.2    Tseng, I.C.3    Yamaguchi, T.4    Brauer, S.L.5    Cadillo-Quiroz, H.6
  • 66
    • 0030871461 scopus 로고    scopus 로고
    • Energetics of syntrophic cooperation in methanogenic degradation
    • Schink, B. (1997) Energetics of syntrophic cooperation in methanogenic degradation. Microbiol Mol Biol Rev 61: 262-280.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 262-280
    • Schink, B.1
  • 68
    • 0029846625 scopus 로고    scopus 로고
    • Clostridium ultunense sp. nov., a mesophilic bacterium oxidizing acetate in syntrophic association with a hydrogenotrophic methanogenic bacterium
    • Schnurer, A., Schink, B., and Svensson, B.H. (1996) Clostridium ultunense sp. nov., a mesophilic bacterium oxidizing acetate in syntrophic association with a hydrogenotrophic methanogenic bacterium. Int J Syst Evol Microbiol 46: 1145-1152.
    • (1996) Int J Syst Evol Microbiol , vol.46 , pp. 1145-1152
    • Schnurer, A.1    Schink, B.2    Svensson, B.H.3
  • 69
    • 32044469186 scopus 로고    scopus 로고
    • Microbial community structure and functions in methane fermentation technology for wastewater treatment
    • Nakano, M.M., and Zuber, P. (eds). Norfolk, UK: Horizon Bioscience.
    • Sekiguchi, Y., and Kamagata, Y. (2004) Microbial community structure and functions in methane fermentation technology for wastewater treatment. In Strict and Facultative Anaerobes: Medical and Environmental Aspects. Nakano, M.M., and Zuber, P. (eds). Norfolk, UK: Horizon Bioscience, pp. 361-384.
    • (2004) Strict and Facultative Anaerobes: Medical and Environmental Aspects , pp. 361-384
    • Sekiguchi, Y.1    Kamagata, Y.2
  • 70
    • 0034068152 scopus 로고    scopus 로고
    • Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate
    • Sekiguchi, Y., Kamagata, Y., Nakamura, K., Ohashi, A., and Harada, H. (2000) Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate. Int J Syst Evol Microbiol 50: 771-779.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 771-779
    • Sekiguchi, Y.1    Kamagata, Y.2    Nakamura, K.3    Ohashi, A.4    Harada, H.5
  • 71
    • 0035651020 scopus 로고    scopus 로고
    • In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I
    • Sekiguchi, Y., Takahashi, H., Kamagata, Y., Ohashi, A., and Harada, H. (2001) In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I. Appl Environ Microbiol 67: 5740-5749.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 5740-5749
    • Sekiguchi, Y.1    Takahashi, H.2    Kamagata, Y.3    Ohashi, A.4    Harada, H.5
  • 72
    • 0344034188 scopus 로고    scopus 로고
    • Anaerolinea thermophila gen. nov., sp nov and Caldilinea aerophila gen. nov., sp nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level
    • Sekiguchi, Y., Yamada, T., Hanada, S., Ohashi, A., Harada, H., and Kamagata, Y. (2003) Anaerolinea thermophila gen. nov., sp nov and Caldilinea aerophila gen. nov., sp nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level. Int J Syst Evol Microbiol 53: 1843-1851.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1843-1851
    • Sekiguchi, Y.1    Yamada, T.2    Hanada, S.3    Ohashi, A.4    Harada, H.5    Kamagata, Y.6
  • 73
    • 84868629743 scopus 로고    scopus 로고
    • Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation
    • Sieber, J.R., McInerney, M.J., and Gunsalus, R.P. (2012) Genomic insights into syntrophy: the paradigm for anaerobic metabolic cooperation. Annu Rev Microbiol 66: 429-452.
    • (2012) Annu Rev Microbiol , vol.66 , pp. 429-452
    • Sieber, J.R.1    McInerney, M.J.2    Gunsalus, R.P.3
  • 74
    • 33749170158 scopus 로고    scopus 로고
    • Overview of anaerobic treatment: thermophilic and propionate implications
    • Speece, R.E., Boonyakitsombut, S., Kim, M., Azbar, N., and Ursillo, P. (2006) Overview of anaerobic treatment: thermophilic and propionate implications. Water Environ Res 78: 460-473.
    • (2006) Water Environ Res , vol.78 , pp. 460-473
    • Speece, R.E.1    Boonyakitsombut, S.2    Kim, M.3    Azbar, N.4    Ursillo, P.5
  • 75
    • 84881547439 scopus 로고    scopus 로고
    • 454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters
    • Sundberg, C., Al-Soud, W.A., Larsson, M., Alm, E., Yekta, S.S., Svensson, B.H., etal. (2013) 454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters. FEMS Microbiol Ecol 85: 612-626.
    • (2013) FEMS Microbiol Ecol , vol.85 , pp. 612-626
    • Sundberg, C.1    Al-Soud, W.A.2    Larsson, M.3    Alm, E.4    Yekta, S.S.5    Svensson, B.H.6
  • 76
    • 80053097826 scopus 로고    scopus 로고
    • Analysis of 16S rRNA amplicon sequencing options on the Roche/454 next-generation titanium sequencing platform
    • Tamaki, H., Wright, C.L., Li, X.Z., Lin, Q.Y., Hwang, C.C., Wang, S.P., etal. (2011) Analysis of 16S rRNA amplicon sequencing options on the Roche/454 next-generation titanium sequencing platform. PLoS ONE 6: e25263.
    • (2011) PLoS ONE , vol.6 , pp. e25263
    • Tamaki, H.1    Wright, C.L.2    Li, X.Z.3    Lin, Q.Y.4    Hwang, C.C.5    Wang, S.P.6
  • 77
    • 77956685006 scopus 로고    scopus 로고
    • Methanoculleus hydrogenitrophicus sp. nov., a methanogenic archaeon isolated from wetland soil
    • Tian, J.Q., Wang, Y.F., and Dong, X.Z. (2010) Methanoculleus hydrogenitrophicus sp. nov., a methanogenic archaeon isolated from wetland soil. Int J Syst Evol Microbiol 60: 2165-2169.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2165-2169
    • Tian, J.Q.1    Wang, Y.F.2    Dong, X.Z.3
  • 78
    • 84921673615 scopus 로고    scopus 로고
    • Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters
    • Vanwonterghem, I., Jensen, P.D., Dennis, P.G., Hugenholtz, P., Rabaey, K., and Tyson, G.W. (2014) Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters. ISME J doi:10.1038/ismej.2014.1050.
    • (2014) ISME J
    • Vanwonterghem, I.1    Jensen, P.D.2    Dennis, P.G.3    Hugenholtz, P.4    Rabaey, K.5    Tyson, G.W.6
  • 79
    • 70350527180 scopus 로고    scopus 로고
    • Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
    • Wang, Y., and Qian, P.Y. (2009) Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PLoS ONE 4: e7401.
    • (2009) PLoS ONE , vol.4 , pp. e7401
    • Wang, Y.1    Qian, P.Y.2
  • 81
    • 0034971935 scopus 로고    scopus 로고
    • Characterization of a 4-methylbenzoate-degrading methanogenic consortium as determined by small-subunit rDNA sequence analysis
    • Wu, J.H., Liu, W.T., Tseng, I.C., and Cheng, S.S. (2001a) Characterization of a 4-methylbenzoate-degrading methanogenic consortium as determined by small-subunit rDNA sequence analysis. J Biosci Bioeng 91: 449-455.
    • (2001) J Biosci Bioeng , vol.91 , pp. 449-455
    • Wu, J.H.1    Liu, W.T.2    Tseng, I.C.3    Cheng, S.S.4
  • 82
    • 0035131221 scopus 로고    scopus 로고
    • Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system
    • Wu, J.H., Liu, W.T., Tseng, I.C., and Cheng, S.S. (2001b) Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Microbiology-SGM 147: 373-382.
    • (2001) Microbiology-SGM , vol.147 , pp. 373-382
    • Wu, J.H.1    Liu, W.T.2    Tseng, I.C.3    Cheng, S.S.4
  • 83
    • 33745320006 scopus 로고    scopus 로고
    • Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp nov and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi
    • Yamada, T., Sekiguchi, Y., Hanada, S., Imachi, H., Ohashi, A., Harada, H., and Kamagata, Y. (2006) Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp nov and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi. Int J Syst Evol Microbiol 56: 1331-1340.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1331-1340
    • Yamada, T.1    Sekiguchi, Y.2    Hanada, S.3    Imachi, H.4    Ohashi, A.5    Harada, H.6    Kamagata, Y.7
  • 84
    • 35648976034 scopus 로고    scopus 로고
    • Bellilinea caldifistulae gen. nov., sp nov and Longilinea arvoryzae gen. nov., sp nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia
    • Yamada, T., Imachi, H., Ohashi, A., Harada, H., Hanada, S., Kamagata, Y., and Sekiguchi, Y. (2007a) Bellilinea caldifistulae gen. nov., sp nov and Longilinea arvoryzae gen. nov., sp nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia. Int J Syst Evol Microbiol 57: 2299-2306.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2299-2306
    • Yamada, T.1    Imachi, H.2    Ohashi, A.3    Harada, H.4    Hanada, S.5    Kamagata, Y.6    Sekiguchi, Y.7
  • 85
    • 34547322945 scopus 로고    scopus 로고
    • Characterization of filamentous bacteria, belonging to candidate phylum KSB3, that are associated with bulking in methanogenic granular sludges
    • Yamada, T., Yamauchi, T., Shiraishi, K., Hugenholtz, P., Ohashi, A., Harada, H., etal. (2007b) Characterization of filamentous bacteria, belonging to candidate phylum KSB3, that are associated with bulking in methanogenic granular sludges. ISME J 1: 246-264.
    • (2007) ISME J , vol.1 , pp. 246-264
    • Yamada, T.1    Yamauchi, T.2    Shiraishi, K.3    Hugenholtz, P.4    Ohashi, A.5    Harada, H.6
  • 86
    • 79953169885 scopus 로고    scopus 로고
    • Ecophysiology of uncultured filamentous anaerobes belonging to the phylum KSB3 that cause bulking in methanogenic granular sludge
    • Yamada, T., Kikuchi, K., Yamauchi, T., Shiraishi, K., Ito, T., Okabe, S., etal. (2011) Ecophysiology of uncultured filamentous anaerobes belonging to the phylum KSB3 that cause bulking in methanogenic granular sludge. Appl Environ Microbiol 77: 2081-2087.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2081-2087
    • Yamada, T.1    Kikuchi, K.2    Yamauchi, T.3    Shiraishi, K.4    Ito, T.5    Okabe, S.6


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