-
2
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA. (1990). Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
3
-
-
0035092506
-
Development of anaerobic migrating blanket reactor (AMBR), a novel anaerobic treatment system
-
Angenent LT, Sung S. (2001). Development of anaerobic migrating blanket reactor (AMBR), a novel anaerobic treatment system. Wat Res 35: 1739-1747.
-
(2001)
Wat Res
, vol.35
, pp. 1739-1747
-
-
Angenent, L.T.1
Sung, S.2
-
4
-
-
0036667419
-
Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal
-
Björnsson L, Hugenholtz P, Tyson GW, Blackall LL. (2002). Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology 148: 2309-2318.
-
(2002)
Microbiology
, vol.148
, pp. 2309-2318
-
-
Björnsson, L.1
Hugenholtz, P.2
Tyson, G.W.3
Blackall, L.L.4
-
5
-
-
34547326690
-
-
Clesceri LS, Greenberg AE, Eaton AD. (1998). Standard Methods for the Examination of Water and Waste-water, 20th edn. APHA AWWA WEF: USA.
-
Clesceri LS, Greenberg AE, Eaton AD. (1998). Standard Methods for the Examination of Water and Waste-water, 20th edn. APHA AWWA WEF: USA.
-
-
-
-
6
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
-
Daims H, Brühl A, Amann R, Schleifer K, Wagner M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. System Appl Microbiol 22: 434-444.
-
(1999)
System Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.4
Wagner, M.5
-
7
-
-
0034069650
-
Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria
-
Dojka MA, Harris JK, Pace NR. (2000). Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl Environ Microbiol 66: 1617-1621.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1617-1621
-
-
Dojka, M.A.1
Harris, J.K.2
Pace, N.R.3
-
8
-
-
0031046086
-
Detoxification and partial mineralization of the azo dye mordant orange 1 in a continuous upflow anaerobic sludge-blanket reactor
-
Donlon B, Razo-Flores E, Luijten M, Swarts H, Lettinga G, Field J. (1997). Detoxification and partial mineralization of the azo dye mordant orange 1 in a continuous upflow anaerobic sludge-blanket reactor. Appl Environ Biotechnol 47: 83-90.
-
(1997)
Appl Environ Biotechnol
, vol.47
, pp. 83-90
-
-
Donlon, B.1
Razo-Flores, E.2
Luijten, M.3
Swarts, H.4
Lettinga, G.5
Field, J.6
-
9
-
-
0024217234
-
Ecological study on anaerobic sludge bulking caused by filamentous bacterial growth in anaerobic contact process
-
Endo G, Tohya Y. (1988). Ecological study on anaerobic sludge bulking caused by filamentous bacterial growth in anaerobic contact process. Wat Sci Tech 20: 205-211.
-
(1988)
Wat Sci Tech
, vol.20
, pp. 205-211
-
-
Endo, G.1
Tohya, Y.2
-
10
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
11
-
-
0036135188
-
Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigeneous to fresh-water lakes
-
Gich F, Garcia-Gil J, Overmann J. (2001). Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigeneous to fresh-water lakes. Arch Microbiol 177: 1-10.
-
(2001)
Arch Microbiol
, vol.177
, pp. 1-10
-
-
Gich, F.1
Garcia-Gil, J.2
Overmann, J.3
-
12
-
-
0026788362
-
A structured model of the anaerobic granule consortium
-
Guiot SR, Pauss A, Costerton JW. (1992). A structured model of the anaerobic granule consortium. Wat Sci Tech 25: 1-10.
-
(1992)
Wat Sci Tech
, vol.25
, pp. 1-10
-
-
Guiot, S.R.1
Pauss, A.2
Costerton, J.W.3
-
13
-
-
0029932879
-
Detection and localization of syntrophic propionate-oxidizing bacteria in granular sludge by in situ hybridization using IBS rRNA-based oligonucleotide probes
-
Harmsen HJM, Kengen HMP, Akkermans ADL, Stams AJM, de Vos WM. (1996). Detection and localization of syntrophic propionate-oxidizing bacteria in granular sludge by in situ hybridization using IBS rRNA-based oligonucleotide probes. Appl Environ Microbiol 62: 1656-1663.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1656-1663
-
-
Harmsen, H.J.M.1
Kengen, H.M.P.2
Akkermans, A.D.L.3
Stams, A.J.M.4
de Vos, W.M.5
-
14
-
-
0037217221
-
Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases
-
Hugenholtz P, Huber T. (2003). Chimeric 16S rDNA sequences of diverse origin are accumulating in the public databases, Int J Syst Evol Microbiol 53: 289-293.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 289-293
-
-
Hugenholtz, P.1
Huber, T.2
-
15
-
-
0036737613
-
Pelotomaculum thermopropionica gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionate-oxidizing bacterium
-
Imachi H, Sekiguchi Y, Kamagata Y, Hanada S, Ohashi A, Harada H. (2002). Pelotomaculum thermopropionica gen. nov., sp. nov., an anaerobic, thermophilic, syntrophic propionate-oxidizing bacterium. Int J Syst Evol Microbiol 52: 1729-1735.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1729-1735
-
-
Imachi, H.1
Sekiguchi, Y.2
Kamagata, Y.3
Hanada, S.4
Ohashi, A.5
Harada, H.6
-
16
-
-
32444437483
-
-
Munich, Germany. Distributed by the author at
-
Jobb G. (2005). TREEFINDER version of June 2005. Munich, Germany. Distributed by the author at www. treefinder.de.
-
(2005)
TREEFINDER version of June 2005
-
-
Jobb, G.1
-
17
-
-
2942666225
-
Treating industrial wastewater: Anaerobic digestion comes of age
-
April
-
Kleerebenzem R, Macarie H. (2003). Treating industrial wastewater: Anaerobic digestion comes of age. Chem Eng April, 2003: 56-65.
-
(2003)
Chem Eng
, vol.2003
, pp. 56-65
-
-
Kleerebenzem, R.1
Macarie, H.2
-
18
-
-
0025570017
-
The characteristics of granules from upflow anaerobic sludge blanket reactors
-
Kosaric N, Blaszczyk R, Orphan L, Valladares J. (1990). The characteristics of granules from upflow anaerobic sludge blanket reactors. Water Res 24: 1473-1477.
-
(1990)
Water Res
, vol.24
, pp. 1473-1477
-
-
Kosaric, N.1
Blaszczyk, R.2
Orphan, L.3
Valladares, J.4
-
19
-
-
0032728207
-
Extreme thermophilic (70°C), VFA-fed UASB reactor: Performance, temperature response, load potential and comparison with 35 and 55 °C UASB reactors
-
Lepistš R, Rintala J. (1999). Extreme thermophilic (70°C), VFA-fed UASB reactor: performance, temperature response, load potential and comparison with 35 and 55 °C UASB reactors. Water Res 33: 3162-3170.
-
(1999)
Water Res
, vol.33
, pp. 3162-3170
-
-
Lepistš, R.1
Rintala, J.2
-
20
-
-
0028887804
-
Anaerobic digestion and wastewater treatment systems
-
Lettinga G. (1995). Anaerobic digestion and wastewater treatment systems. Antonie van Leeuwenhoek 67: 3-28.
-
(1995)
Antonie van Leeuwenhoek
, vol.67
, pp. 3-28
-
-
Lettinga, G.1
-
21
-
-
0035451483
-
Challenge of psychrophilic anaerobic wastewater treatment
-
Lettinga G, Rebac S, Zeeman G. (2001). Challenge of psychrophilic anaerobic wastewater treatment. Trends in Biotechnol 19: 363-370.
-
(2001)
Trends in Biotechnol
, vol.19
, pp. 363-370
-
-
Lettinga, G.1
Rebac, S.2
Zeeman, G.3
-
22
-
-
33646584137
-
Unexpected diversity and complexity of the Gurrero Negro Hypersaline Microbial Mat
-
Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM et al. (2006). Unexpected diversity and complexity of the Gurrero Negro Hypersaline Microbial Mat. Appl Environ Microbiol 72: 3685-3695.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3685-3695
-
-
Ley, R.E.1
Harris, J.K.2
Wilcox, J.3
Spear, J.R.4
Miller, S.R.5
Bebout, B.M.6
-
23
-
-
0036216418
-
Characterization of microbial community in granular sludge treating brewery wastewater
-
Liu W-T, Chan O-C, Fang HHP. (2002). Characterization of microbial community in granular sludge treating brewery wastewater. Water Res 36: 1767-1775.
-
(2002)
Water Res
, vol.36
, pp. 1767-1775
-
-
Liu, W.-T.1
Chan, O.-C.2
Fang, H.H.P.3
-
25
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar et al. (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
-
26
-
-
0032703237
-
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
-
Miller DN, Bryant JE, Madsen EL, Ghiorse WC. (1999). Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microbiol 65: 4715-4724.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
27
-
-
0033060199
-
Psychrophilic anaerobic treatment of low strength wastewaters
-
Rebac S, van Lier JB, Lens P, Stams AJM, Dekkers F, Swinkels KTM et al. (1999). Psychrophilic anaerobic treatment of low strength wastewaters. Water Sci Tech 39: 203-210.
-
(1999)
Water Sci Tech
, vol.39
, pp. 203-210
-
-
Rebac, S.1
van Lier, J.B.2
Lens, P.3
Stams, A.J.M.4
Dekkers, F.5
Swinkels, K.T.M.6
-
28
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
29
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
31
-
-
0033027522
-
Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules
-
Sekiguchi Y, Kamagata Y, Nakamura K, Ohashi A, Harada H. (1999). Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. Appl Environ Microbiol 65: 1280-1288.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1280-1288
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Nakamura, K.3
Ohashi, A.4
Harada, H.5
-
32
-
-
0031719182
-
Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis
-
Sekiguchi Y, Kamagata Y, Syutsubo K, Ohashi A, Harada H, Nakamura K. (1998). Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology 144: 2655-2665.
-
(1998)
Microbiology
, vol.144
, pp. 2655-2665
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Syutsubo, K.3
Ohashi, A.4
Harada, H.5
Nakamura, K.6
-
33
-
-
0035651020
-
In situ detection, isolation, physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: A novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I
-
Sekiguchi Y, Takahashi H, Kamagata Y, Ohashi A, Harada H. (2001). In situ detection, isolation, physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I. Appl Environ Microbiol 67: 5740-5749.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5740-5749
-
-
Sekiguchi, Y.1
Takahashi, H.2
Kamagata, Y.3
Ohashi, A.4
Harada, H.5
-
34
-
-
0344034188
-
Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level
-
Sekiguchi Y, Yamada T, Hanada S, Ohashi A, Harada H, Kamagata Y. (2003). Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level. Int J Syst Evol Microbiol 53: 1843-1851.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1843-1851
-
-
Sekiguchi, Y.1
Yamada, T.2
Hanada, S.3
Ohashi, A.4
Harada, H.5
Kamagata, Y.6
-
35
-
-
0024005650
-
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
-
Stahl DA, Flesher B, Mansfield HR, Montgomery L. (1988). Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl Environ Microbiol 54: 1079-1084.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 1079-1084
-
-
Stahl, D.A.1
Flesher, B.2
Mansfield, H.R.3
Montgomery, L.4
-
36
-
-
34547277413
-
-
Swofford DL, 2002, PAUP*: Phylogenetic analysis using parsimony (* and other methods) version 4. Sinauer Associates: Sunderland, MA
-
Swofford DL. (2002). PAUP*: Phylogenetic analysis using parsimony (* and other methods) version 4. Sinauer Associates: Sunderland, MA.
-
-
-
-
37
-
-
0002079242
-
Complex microbial communities inhabiting sulfide-rich black mud from marine coastal environments
-
Tanner MA, Everett CL, Coleman WJ, Yang MM, Youvan DC. (2000). Complex microbial communities inhabiting sulfide-rich black mud from marine coastal environments. Biotechnology 8: 1-16.
-
(2000)
Biotechnology
, vol.8
, pp. 1-16
-
-
Tanner, M.A.1
Everett, C.L.2
Coleman, W.J.3
Yang, M.M.4
Youvan, D.C.5
-
38
-
-
0027235875
-
Microbial characteristics of methanogenic sludge consortia developed in thermophilic UASB reactors
-
Uemura S, Harada H. (1993). Microbial characteristics of methanogenic sludge consortia developed in thermophilic UASB reactors. Appl Microbiol Biotechnol 39: 654-660.
-
(1993)
Appl Microbiol Biotechnol
, vol.39
, pp. 654-660
-
-
Uemura, S.1
Harada, H.2
-
39
-
-
0033622954
-
Treatment of sewage by a UASB reactor under moderate to low temperature conditions
-
Uemura S, Harada H. (2000). Treatment of sewage by a UASB reactor under moderate to low temperature conditions. Biores Tech 72: 275-282.
-
(2000)
Biores Tech
, vol.72
, pp. 275-282
-
-
Uemura, S.1
Harada, H.2
-
40
-
-
5444224763
-
Thermophilic (55-65°C) and extreme thermophilic (70-80°C) sulfate reduction in methanol and formatefed UASB reactors
-
Vallero MVG, Camarero E, Lettinga G, Lens PNL. (2004). Thermophilic (55-65°C) and extreme thermophilic (70-80°C) sulfate reduction in methanol and formatefed UASB reactors. Biotechnol Prog 20: 1382-1392.
-
(2004)
Biotechnol Prog
, vol.20
, pp. 1382-1392
-
-
Vallero, M.V.G.1
Camarero, E.2
Lettinga, G.3
Lens, P.N.L.4
-
41
-
-
0034903419
-
Azo dye decolourisation by anaerobic granular sludge
-
van der Zee FP, Lettinga G, Field JA. (2001). Azo dye decolourisation by anaerobic granular sludge. Chemosphere 44: 1169-1176.
-
(2001)
Chemosphere
, vol.44
, pp. 1169-1176
-
-
van der Zee, F.P.1
Lettinga, G.2
Field, J.A.3
-
43
-
-
0027170178
-
Comparison of rod- versus filament-type methanogenic granules: Microbial population and reactor performance
-
Wu W-M, Thiele JH, Jain MK, Pankratz HS, Hickey RF, Zeikus JG. (1993). Comparison of rod- versus filament-type methanogenic granules: microbial population and reactor performance. Appl Environ Biotechnol 39: 795-803.
-
(1993)
Appl Environ Biotechnol
, vol.39
, pp. 795-803
-
-
Wu, W.-M.1
Thiele, J.H.2
Jain, M.K.3
Pankratz, H.S.4
Hickey, R.F.5
Zeikus, J.G.6
-
44
-
-
33745320006
-
Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi
-
Yamada T, Sekiguchi Y, Hanada S, Imachi H, Ohashi A, Harada H et al. (2006). Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi. Int J Syst Evol Bacteriol 56: 1331-1340.
-
(2006)
Int J Syst Evol Bacteriol
, vol.56
, pp. 1331-1340
-
-
Yamada, T.1
Sekiguchi, Y.2
Hanada, S.3
Imachi, H.4
Ohashi, A.5
Harada, H.6
-
45
-
-
32044434395
-
Diversity, localization and physiological properties of filamentous microbes belonging to Chloroflexi subphylum I in mesophilic and thermophilic methanogenic sludge granules
-
Yamada T, Sekiguchi Y, Imachi H, Kamagata Y, Ohashi A, Harada H. (2005). Diversity, localization and physiological properties of filamentous microbes belonging to Chloroflexi subphylum I in mesophilic and thermophilic methanogenic sludge granules. Appl Environ Microbiol 71: 7493-7503.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7493-7503
-
-
Yamada, T.1
Sekiguchi, Y.2
Imachi, H.3
Kamagata, Y.4
Ohashi, A.5
Harada, H.6
-
46
-
-
0034910731
-
Microbial-ecological significant of sulfide precipitation within anaerobic granular sludge revealed by micro-electrodes study
-
Yamaguchi T, Yamazaki S, Uemura S, Tseng I-C, Ohashi A, Harada H. (2001). Microbial-ecological significant of sulfide precipitation within anaerobic granular sludge revealed by micro-electrodes study. Water Res 35: 3411-3417.
-
(2001)
Water Res
, vol.35
, pp. 3411-3417
-
-
Yamaguchi, T.1
Yamazaki, S.2
Uemura, S.3
Tseng, I.-C.4
Ohashi, A.5
Harada, H.6
-
47
-
-
0024322078
-
Granular sludge formation in the anaerobic expanded microcarrier bed process
-
Yoda M, Kitagawa M, Miyaji Y. (1989). Granular sludge formation in the anaerobic expanded microcarrier bed process. Wat Sci Tech 21: 109-120.
-
(1989)
Wat Sci Tech
, vol.21
, pp. 109-120
-
-
Yoda, M.1
Kitagawa, M.2
Miyaji, Y.3
-
48
-
-
0030721036
-
Controlling granular sludge floating in UASB reactors
-
Yoda M, Nishimura S. (1997). Controlling granular sludge floating in UASB reactors. Water Sci Tech 36: 165-173.
-
(1997)
Water Sci Tech
, vol.36
, pp. 165-173
-
-
Yoda, M.1
Nishimura, S.2
-
49
-
-
0042812120
-
Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, poly-phosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl nov
-
Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y et al. (2003). Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, poly-phosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl nov. Int J Syst Evol Microbiol 53: 1155-1163.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1155-1163
-
-
Zhang, H.1
Sekiguchi, Y.2
Hanada, S.3
Hugenholtz, P.4
Kim, H.5
Kamagata, Y.6
|