-
1
-
-
84872519378
-
Hybridization and speciation
-
Abbott, R., D. Albach, S. Ansell, J. W. Arntzen, S. J. E. Baird, N. Bierne, J. Boughman, et al. 2013. Hybridization and speciation. Journal of Evolutionary Biology 26:229-246.
-
(2013)
Journal of Evolutionary Biology
, vol.26
, pp. 229-246
-
-
Abbott, R.1
Albach, D.2
Ansell, S.3
Arntzen, J.W.4
Baird, S.J.5
Bierne, N.6
Boughman, J.7
-
2
-
-
84867099919
-
Genome size is not correlated with effective population size in the Oryza species
-
Ai, B., Z.-S. Wang, and S. Ge. 2012. Genome size is not correlated with effective population size in the Oryza species. Evolution 66:3302-3310.
-
(2012)
Evolution
, vol.66
, pp. 3302-3310
-
-
Ai, B.1
Wang, Z.-S.2
Ge, S.3
-
3
-
-
84864283024
-
Extremophilic Acinetobacter strains from high-altitude lakes in Argentinean Puna: Remarkable UV-B resistance and efficient DNA damage repair
-
Albarracín, V. H., G. P. Pathak, T. Douki, J. Cadet, C. D. Borsarelli, W. Gärtner, and M. E. Farias. 2012. Extremophilic Acinetobacter strains from high-altitude lakes in Argentinean Puna: remarkable UV-B resistance and efficient DNA damage repair. Origins of Life and Evolution of Biospheres 42:201-221.
-
(2012)
Origins of Life and Evolution of Biospheres
, vol.42
, pp. 201-221
-
-
Albarracín, V.H.1
Pathak, G.P.2
Douki, T.3
Cadet, J.4
Borsarelli, C.D.5
Gärtner, W.6
Farias, M.E.7
-
5
-
-
0034998592
-
Evolutionary rates and species diversity in flowering plants
-
Barraclough, T. G., and V. Savolainen. 2001. Evolutionary rates and species diversity in flowering plants. Evolution 55:677-683.
-
(2001)
Evolution
, vol.55
, pp. 677-683
-
-
Barraclough, T.G.1
Savolainen, V.2
-
7
-
-
49249094705
-
Genome size is a strong predictor of cell size and stomatal density in angiosperms
-
Beaulieu, J. M., I. J. Leitch, S. Patel, A. Pendharkar, and C. A. Knight. 2008. Genome size is a strong predictor of cell size and stomatal density in angiosperms. New Phytologist 179:975-986.
-
(2008)
New Phytologist
, vol.179
, pp. 975-986
-
-
Beaulieu, J.M.1
Leitch, I.J.2
Patel, S.3
Pendharkar, A.4
Knight, C.A.5
-
8
-
-
33845609219
-
Correlated evolution of genome size and seed mass
-
Beaulieu, J. M., A. T. Moles, I. J. Leitch, M. D. Bennett, J. B. Dickie, and C. A. Knight. 2007. Correlated evolution of genome size and seed mass. New Phytologist 173:422-437.
-
(2007)
New Phytologist
, vol.173
, pp. 422-437
-
-
Beaulieu, J.M.1
Moles, A.T.2
Leitch, I.J.3
Bennett, M.D.4
Dickie, J.B.5
Knight, C.A.6
-
9
-
-
79952139466
-
On the tempo of genome size evolution in angiosperms
-
Beaulieu, J. M., S. A. Smith, and I. J. Leitch. 2010. On the tempo of genome size evolution in angiosperms. Journal of Botany, http://dx.doi.org/10.1155/2010/989152.
-
(2010)
Journal of Botany
-
-
Beaulieu, J.M.1
Smith, S.A.2
Leitch, I.J.3
-
11
-
-
84882468079
-
Genome size evolution in plants
-
in T. Gregory, ed., Elsevier, London
-
Bennett, M. D., and I. J. Leitch. 2005. Genome size evolution in plants. Pages 89-162 in T. Gregory, ed. The evolution of the genome. Elsevier, London.
-
(2005)
The Evolution of the Genome
, pp. 89-162
-
-
Bennett, M.D.1
Leitch, I.J.2
-
12
-
-
84928235992
-
Plant DNA C-values database. Release 6.0
-
Bennett, M. D., and I. J. Leitch. 2012. Plant DNA C-values database. Release 6.0. December 2012. http://data.kew.org/cvalues/.
-
(2012)
December
, pp. 2012
-
-
Bennett, M.D.1
Leitch, I.J.2
-
13
-
-
21644437476
-
Mechanisms of recent genome size variation in flowering plants
-
Bennetzen, J. L., J. Ma, and K. M. Devos. 2005. Mechanisms of recent genome size variation in flowering plants. Annals of Botany 95: 127-132.
-
(2005)
Annals of Botany
, vol.95
, pp. 127-132
-
-
Bennetzen, J.L.1
Ma, J.2
Devos, K.M.3
-
14
-
-
84888003150
-
Somatic deleterious mutation rate in a woody plant: Estimation from phenotypic data
-
Bobiwash, K., S. Schultz, and D. Schoen. 2013. Somatic deleterious mutation rate in a woody plant: estimation from phenotypic data. Heredity 111:338-344.
-
(2013)
Heredity
, vol.111
, pp. 338-344
-
-
Bobiwash, K.1
Schultz, S.2
Schoen, D.3
-
15
-
-
67649130520
-
Why do species vary in their rate of molecular evolution?
-
Bromham, L. 2009. Why do species vary in their rate of molecular evolution? Biology Letters 5:401-404.
-
(2009)
Biology Letters
, vol.5
, pp. 401-404
-
-
Bromham, L.1
-
16
-
-
84928248771
-
-
American Naturalist, Dryad Digital Repository
-
Bromham, L., X Hua, R. Lanfear, and P. F. Cowman. 2015. Exploring the relationships between mutation rates, life history, genome size, environment, and species richness in flowering plants. American Naturalist, Dryad Digital Repository, http://dx.doi.org/10.5061/dryad.31614.
-
(2015)
Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants
-
-
Bromham, L.1
Hua, X.2
Lanfear, R.3
Cowman, P.F.4
-
17
-
-
0030442757
-
Determinants of rate variation in mammalian DNA sequence evolution
-
Bromham, L., A. Rambaut, and P. H. Harvey. 1996. Determinants of rate variation in mammalian DNA sequence evolution. Journal of Molecular Evolution 43:610-621.
-
(1996)
Journal of Molecular Evolution
, vol.43
, pp. 610-621
-
-
Bromham, L.1
Rambaut, A.2
Harvey, P.H.3
-
18
-
-
84890279798
-
Why are there so many species in the tropics?
-
Brown, J. H. 2014. Why are there so many species in the tropics? Journal of Biogeography 41:8-22.
-
(2014)
Journal of Biogeography
, vol.41
, pp. 8-22
-
-
Brown, J.H.1
-
19
-
-
65349083699
-
Inferring phylogenies with incomplete data sets: A 5-gene, 567-taxon analysis of angiosperms
-
Burleigh, J. G., K. Hilu, and D. Soltis. 2009. Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms. BMC Evolutionary Biology 9:61.
-
(2009)
BMC Evolutionary Biology
, vol.9
, pp. 61
-
-
Burleigh, J.G.1
Hilu, K.2
Soltis, D.3
-
20
-
-
84867580162
-
A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities?
-
Burton, R. S., and F. S. Barreto. 2012. A disproportionate role for mtDNA in Dobzhansky-Muller incompatibilities? Molecular Ecology 21:4942-4957.
-
(2012)
Molecular Ecology
, vol.21
, pp. 4942-4957
-
-
Burton, R.S.1
Barreto, F.S.2
-
22
-
-
60349093708
-
Effective population size and patterns of molecular evolution and variation
-
Charlesworth, B. 2009. Effective population size and patterns of molecular evolution and variation. Nature Reviews Genetics 10:195-205.
-
(2009)
Nature Reviews Genetics
, vol.10
, pp. 195-205
-
-
Charlesworth, B.1
-
24
-
-
84871680520
-
Conflictual speciation: Species formation via genomic conflict
-
Crespi, B., and P. Nosil. 2012. Conflictual speciation: species formation via genomic conflict. Trends in Ecology and Evolution 28:48-57.
-
(2012)
Trends in Ecology and Evolution
, vol.28
, pp. 48-57
-
-
Crespi, B.1
Nosil, P.2
-
26
-
-
8144220059
-
Environmental causes for plant biodiversity gradients
-
Davies, T. J., T. G. Barraclough, V. Savolainen, and M. W. Chase. 2004a. Environmental causes for plant biodiversity gradients. Philosophical Transactions of the Royal Society B: Biological Sciences 359:1645-1656.
-
(2004)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.359
, pp. 1645-1656
-
-
Davies, T.J.1
Barraclough, T.G.2
Savolainen, V.3
Chase, M.W.4
-
27
-
-
8344229795
-
Environmental energy and evolutionary rates in flowering plants
-
Davies, T. J., V. Savolainen, M. W. Chase, J. Moat, and T. G. Barraclough. 2004b. Environmental energy and evolutionary rates in flowering plants. Proceedings of the Royal Society B: Biological Sciences 271:2195-2220.
-
(2004)
Proceedings of the Royal Society B: Biological Sciences
, vol.271
, pp. 2195-2220
-
-
Davies, T.J.1
Savolainen, V.2
Chase, M.W.3
Moat, J.4
Barraclough, T.G.5
-
28
-
-
84876669100
-
Latitudinal gradients as natural laboratories to infer species’ responses to temperature
-
De Frenne, P., B. J. Graae, F. Rodríguez-Sánchez, A. Kolb, O. Chabrerie, G. Decocq, H. De Kort, et al. 2013. Latitudinal gradients as natural laboratories to infer species’ responses to temperature. Journal of Ecology 101:784-795.
-
(2013)
Journal of Ecology
, vol.101
, pp. 784-795
-
-
De Frenne, P.1
Graae, B.J.2
Rodríguez-Sánchez, F.3
Kolb, A.4
Chabrerie, O.5
Decocq, G.6
De Kort, H.7
-
29
-
-
84878529453
-
Molecular evolution and the latitudinal biodiversity gradient
-
Dowle, E., M. Morgan-Richards, and S. Trewick. 2013. Molecular evolution and the latitudinal biodiversity gradient. Heredity 110: 501-510.
-
(2013)
Heredity
, vol.110
, pp. 501-510
-
-
Dowle, E.1
Morgan-Richards, M.2
Trewick, S.3
-
30
-
-
0031916242
-
Rates of spontaneous mutation
-
Drake, J., B. Charlesworth, D. Charlesworth, and J. Crow. 1998. Rates of spontaneous mutation. Genetics 148:1667-1686.
-
(1998)
Genetics
, vol.148
, pp. 1667-1686
-
-
Drake, J.1
Charlesworth, B.2
Charlesworth, D.3
Crow, J.4
-
31
-
-
79951663055
-
-
Drummond, A. J., B. Ashton, S. Buxton, M. Cheung, A. Cooper, C. Duran, M. Field, et al. 2011. Geneious. http://www.geneious.com.
-
(2011)
Geneious
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Cooper, A.5
Duran, C.6
Field, M.7
-
32
-
-
84874795632
-
Rates of molecular evolution and diversification in plants: Chloroplast substitution rates correlate with species richness in the Proteaceae
-
Duchene, D., and L. Bromham. 2013. Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species richness in the Proteaceae. BMC Evolutionary Biology 13:65.
-
(2013)
BMC Evolutionary Biology
, vol.13
, pp. 65
-
-
Duchene, D.1
Bromham, L.2
-
33
-
-
0032786233
-
A phylogenomic study of DNA repair genes, proteins, and processes
-
Eisen, J. A., and P. C. Hanawalt. 1999. A phylogenomic study of DNA repair genes, proteins, and processes. Mutation Research/ DNA Repair 435:171-213.
-
(1999)
Mutation Research/ DNA Repair
, vol.435
, pp. 171-213
-
-
Eisen, J.A.1
Hanawalt, P.C.2
-
34
-
-
78650048171
-
Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles
-
Eo, S. H., and J. A. DeWoody. 2010 Evolutionary rates of mitochondrial genomes correspond to diversification rates and to contemporary species richness in birds and reptiles. Proceedings of the Royal Society B: Biological Sciences 277:3587-3592.
-
(2010)
Proceedings of the Royal Society B: Biological Sciences
, vol.277
, pp. 3587-3592
-
-
Eo, S.H.1
Dewoody, J.A.2
-
35
-
-
34447546660
-
The distribution of fitness effects of new mutations
-
Eyre-Walker, A., and P. D. Keightley. 2007. The distribution of fitness effects of new mutations. Nature Reviews Genetics 8:610-618.
-
(2007)
Nature Reviews Genetics
, vol.8
, pp. 610-618
-
-
Eyre-Walker, A.1
Keightley, P.D.2
-
36
-
-
84881580609
-
Inclusion of a near-complete fossil record reveals speciation-related molecular evolution
-
Ezard, T. H. G., G. H. Thomas, and A. Purvis. 2013. Inclusion of a near-complete fossil record reveals speciation-related molecular evolution. Methods in Ecology and Evolution 4:745-753.
-
(2013)
Methods in Ecology and Evolution
, vol.4
, pp. 745-753
-
-
Ezard, T.1
Thomas, G.H.2
Purvis, A.3
-
37
-
-
79955003395
-
Why is pollen yellow? And why are there so many species in the tropical rain forest?
-
Flenley, J. R. 2011. Why is pollen yellow? and why are there so many species in the tropical rain forest? Journal of Biogeography 38: 809-816.
-
(2011)
Journal of Biogeography
, vol.38
, pp. 809-816
-
-
Flenley, J.R.1
-
38
-
-
70349431204
-
Latitude, elevation and the tempo of molecular evolution in mammals
-
Gillman, L. N., D. J. Keeling, H. A. Ross, and S. D. Wright. 2009. Latitude, elevation and the tempo of molecular evolution in mammals. Proceedings of the Royal Society B: Biological Sciences 276: 3353-3359.
-
(2009)
Proceedings of the Royal Society B: Biological Sciences
, vol.276
, pp. 3353-3359
-
-
Gillman, L.N.1
Keeling, D.J.2
Ross, H.A.3
Wright, S.D.4
-
39
-
-
84890310949
-
Species richness and evolutionary speed: The influence of temperature, water and area
-
Gillman, L. N., and S. D. Wright. 2014. Species richness and evolutionary speed: the influence of temperature, water and area. Journal of Biogeography 41:39-51.
-
(2014)
Journal of Biogeography
, vol.41
, pp. 39-51
-
-
Gillman, L.N.1
Wright, S.D.2
-
40
-
-
77956920369
-
Evolutionary speed limited by water in arid Australia
-
Goldie, X., L. Gillman, M. Crisp, and S. Wright. 2010. Evolutionary speed limited by water in arid Australia. Proceedings of the Royal Society B: Biological Sciences 277:2645-2653.
-
(2010)
Proceedings of the Royal Society B: Biological Sciences
, vol.277
, pp. 2645-2653
-
-
Goldie, X.1
Gillman, L.2
Crisp, M.3
Wright, S.4
-
41
-
-
80053458019
-
Diversification and the rate of molecular evolution: No evidence of a link in mammals
-
Goldie, X., R. Lanfear, and L. Bromham 2011. Diversification and the rate of molecular evolution: no evidence of a link in mammals. BMC Evolutionary Biology 11:286.
-
(2011)
BMC Evolutionary Biology
, vol.11
, pp. 286
-
-
Goldie, X.1
Lanfear, R.2
Bromham, L.3
-
42
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman, N., and Z. Yang. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Molecular Biology and Evolution 11:725-736.
-
(1994)
Molecular Biology and Evolution
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
43
-
-
77953136453
-
Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results
-
Gorniak, M., O. Paun, and M. W. Chase. 2010. Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: congruence with organellar and nuclear ribosomal DNA results. Molecular Phylogenetics and Evolution 56:784-795.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.56
, pp. 784-795
-
-
Gorniak, M.1
Paun, O.2
Chase, M.W.3
-
44
-
-
84875000516
-
Tuning a ménage à trois: Co-evolution and co-adaptation of nuclear and organellar genomes in plants
-
Greiner, S., and R. Bock. 2013. Tuning a ménage à trois: co-evolution and co-adaptation of nuclear and organellar genomes in plants. BioEssays 35:354-365.
-
(2013)
Bioessays
, vol.35
, pp. 354-365
-
-
Greiner, S.1
Bock, R.2
-
45
-
-
79551654312
-
The role of plastids in plant speciation
-
Greiner, S., U. W. E. Rauwolf, J. Meurer, and R. G. Herrmann. 2011. The role of plastids in plant speciation. Molecular Ecology 20: 671-691.
-
(2011)
Molecular Ecology
, vol.20
, pp. 671-691
-
-
Greiner, S.1
Rauwolf, U.W.2
Meurer, J.3
Herrmann, R.G.4
-
46
-
-
84856745517
-
Somatic mutations contribute to genotypic diversity in sterile and fertile populations of the threatened shrub, Grevillea rhizomatosa (Proteaceae)
-
Gross, C. L., P. A. Nelson, A. Haddadchi, and M. Fatemi. 2012. Somatic mutations contribute to genotypic diversity in sterile and fertile populations of the threatened shrub, Grevillea rhizomatosa (Proteaceae). Annals of Botany 109:331-342.
-
(2012)
Annals of Botany
, vol.109
, pp. 331-342
-
-
Gross, C.L.1
Nelson, P.A.2
Haddadchi, A.3
Fatemi, M.4
-
47
-
-
77956811011
-
Recent insights into mechanisms of genome size change in plants
-
Grover, C. E., and J. F. Wendel. 2010. Recent insights into mechanisms of genome size change in plants. Journal of Botany 2010: 382732.
-
(2010)
Journal of Botany
, vol.2010
-
-
Grover, C.E.1
Wendel, J.F.2
-
48
-
-
10744225171
-
Energy, water, and broadscale geographic patterns of species richness
-
Hawkins, B. A., R. Field, H. V. Cornell, D. J. Currie, J.-F. Guégan, D. M. Kaufman, J. T. Kerr, et al. 2003. Energy, water, and broadscale geographic patterns of species richness. Ecology 84:3105-3117.
-
(2003)
Ecology
, vol.84
, pp. 3105-3117
-
-
Hawkins, B.A.1
Field, R.2
Cornell, H.V.3
Currie, D.J.4
Guégan, J.-F.5
Kaufman, D.M.6
Kerr, J.T.7
-
49
-
-
84869188656
-
Ecological effects of cell-level processes: Genome size, functional traits and regional abundance of herbaceous plant species
-
Herben, T., J. Suda, J. Klimešová, S. Mihulka, P. Říha, and I. Šímová. 2012. Ecological effects of cell-level processes: genome size, functional traits and regional abundance of herbaceous plant species. Annals of Botany 110:1357-1367.
-
(2012)
Annals of Botany
, vol.110
, pp. 1357-1367
-
-
Herben, T.1
Suda, J.2
Klimešová, J.3
Mihulka, S.4
Říha, P.5
Šímová, I.6
-
50
-
-
77953956779
-
Stomatal vs. Genome size in angiosperms: The somatic tail wagging the genomic dog?
-
Hodgson, J. G., M. Sharafi, A. Jalili, S. Diaz, G. Montserrat-Marti, C. Palmer, B. Cerabolini, et al. 2010. Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog? Annals of Botany 105:573-584.
-
(2010)
Annals of Botany
, vol.105
, pp. 573-584
-
-
Hodgson, J.G.1
Sharafi, M.2
Jalili, A.3
Diaz, S.4
Montserrat-Marti, G.5
Palmer, C.6
Cerabolini, B.7
-
51
-
-
84879150704
-
How does climate influence speciation
-
Hua, X., and J. J. Wiens. 2013. How does climate influence speciation. American Naturalist 182:1-12.
-
(2013)
American Naturalist
, vol.182
, pp. 1-12
-
-
Hua, X.1
Wiens, J.J.2
-
52
-
-
34848918825
-
The likelihood node density effect and consequences for evolutionary studies of molecular rates
-
Hugall, A. F., and M. S. Lee. 2007. The likelihood node density effect and consequences for evolutionary studies of molecular rates. Evolution 61:2293-2307.
-
(2007)
Evolution
, vol.61
, pp. 2293-2307
-
-
Hugall, A.F.1
Lee, M.S.2
-
54
-
-
0032055446
-
Higher plants and UV-B radiation: Balancing damage, repair and acclimation
-
Jansen, M. A., V. Gaba, and B. M. Greenberg. 1998. Higher plants and UV-B radiation: balancing damage, repair and acclimation. Trends in Plant Science 3:131-135.
-
(1998)
Trends in Plant Science
, vol.3
, pp. 131-135
-
-
Jansen, M.A.1
Gaba, V.2
Greenberg, B.M.3
-
55
-
-
84899966121
-
Adaptive and nonadaptive genome size evolution in Karst endemic flora of China
-
Kang, M., J. Tao, J. Wang, C. Ren, Q. Qi, Q. Ä. Xiang, and H. Huang. 2014. Adaptive and nonadaptive genome size evolution in Karst endemic flora of China. New Phytologist 202:1371-1381.
-
(2014)
New Phytologist
, vol.202
, pp. 1371-1381
-
-
Kang, M.1
Tao, J.2
Wang, J.3
Ren, C.4
Qi, Q.5
Xiang, Q.Ä.6
Huang, H.7
-
56
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh, K., K. Misawa, K. Ä. Kuma, and T. Miyata. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research 30:3059-3066.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.Ä.3
Miyata, T.4
-
58
-
-
0024475237
-
Ageing and mutation in plants
-
Klekowski, E. J., and P. J. Godfrey. 1989. Ageing and mutation in plants. Nature 340:389-391.
-
(1989)
Nature
, vol.340
, pp. 389-391
-
-
Klekowski, E.J.1
Godfrey, P.J.2
-
59
-
-
48849101345
-
Genome size scaling through phenotype space
-
Knight, C. A., and J. M. Beaulieu. 2008. Genome size scaling through phenotype space. Annals of Botany 101:759-766.
-
(2008)
Annals of Botany
, vol.101
, pp. 759-766
-
-
Knight, C.A.1
Beaulieu, J.M.2
-
60
-
-
78649925356
-
Genome size and species diversification
-
Kraaijeveld, K. 2010. Genome size and species diversification. Evolutionary Biology 37:227-233.
-
(2010)
Evolutionary Biology
, vol.37
, pp. 227-233
-
-
Kraaijeveld, K.1
-
61
-
-
77952851611
-
Molecular evolutionary rates predict both extinction and speciation in temperate angiosperm lineages
-
Lancaster, L. T. 2010. Molecular evolutionary rates predict both extinction and speciation in temperate angiosperm lineages. BMC Evolutionary Biology 10:162.
-
(2010)
BMC Evolutionary Biology
, vol.10
, pp. 162
-
-
Lancaster, L.T.1
-
62
-
-
79955558282
-
Molecular evolution and diversification: Counting species is better than counting nodes when the phylogeny is unknown
-
Lanfear, R., L. Bromham, and S. Y. Ho. 2011. Molecular evolution and diversification: counting species is better than counting nodes when the phylogeny is unknown. Proceedings of the National Academy of Sciences of the USA 108:E85-E86.
-
(2011)
Proceedings of the National Academy of Sciences of the USA
, vol.108
, pp. E85-E86
-
-
Lanfear, R.1
Bromham, L.2
Ho, S.Y.3
-
63
-
-
84878712034
-
Taller plants have lower rates of molecular evolution: The rate of mitosis hypothesis
-
Lanfear, R., S. Y. W. Ho, T. J. Davies, A. T. A. Moles, L. N. G. Swenson, L. Warman, A. E. Zanne, et al. 2013. Taller plants have lower rates of molecular evolution: the rate of mitosis hypothesis. Nature Communications 4:1879.
-
(2013)
Nature Communications
, vol.4
, pp. 1879
-
-
Lanfear, R.1
Ho, S.Y.2
Davies, T.J.3
Moles, A.T.4
Swenson, L.N.5
Warman, L.6
Zanne, A.E.7
-
64
-
-
78650526705
-
Mutation rate influences diversification rate in birds
-
Lanfear, R., S. Y. W. Ho, D. Love, and L. Bromham. 2010a. Mutation rate influences diversification rate in birds. Proceedings of the National Academy of Sciences of the USA 107:20423-20428.
-
(2010)
Proceedings of the National Academy of Sciences of the USA
, vol.107
, pp. 20423-20428
-
-
Lanfear, R.1
Ho, S.Y.2
Love, D.3
Bromham, L.4
-
65
-
-
77955657333
-
Watching the clock: Studying variation in rates of molecular evolution
-
Lanfear, R., J. J. Welch, and L. Bromham. 2010b. Watching the clock: studying variation in rates of molecular evolution. Trends in Ecology and Evolution 25:495-503.
-
(2010)
Trends in Ecology and Evolution
, vol.25
, pp. 495-503
-
-
Lanfear, R.1
Welch, J.J.2
Bromham, L.3
-
66
-
-
73149107791
-
Genome size reduction can trigger rapid phenotypic evolution in invasive plants
-
Lavergne, S. B., N. J. Muenke, and J. Molofsky. 2010. Genome size reduction can trigger rapid phenotypic evolution in invasive plants. Annals of Botany 105:109-116.
-
(2010)
Annals of Botany
, vol.105
, pp. 109-116
-
-
Lavergne, S.B.1
Muenke, N.J.2
Molofsky, J.3
-
67
-
-
0037221438
-
The cytoplasmic factor in plant speciation
-
Levin, D. A. 2003. The cytoplasmic factor in plant speciation. Systematic Botany 28:5-11.
-
(2003)
Systematic Botany
, vol.28
, pp. 5-11
-
-
Levin, D.A.1
-
68
-
-
85069286982
-
Path analysis
-
in K. Kempf-Leonard, ed., Academic Press, San Diego, CA
-
Lleras, C. 2005. Path analysis. Pages 25-30 in K. Kempf-Leonard, ed. Encyclopedia of social measurement. Academic Press, San Diego, CA.
-
(2005)
Encyclopedia of Social Measurement
, pp. 25-30
-
-
Lleras, C.1
-
69
-
-
52949131888
-
Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
-
Lockton, S., J. Ross-Ibarra, and B. S. Gaut. 2008. Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. Proceedings of the National Academy of Sciences of the USA 105:13965-13970.
-
(2008)
Proceedings of the National Academy of Sciences of the USA
, vol.105
, pp. 13965-13970
-
-
Lockton, S.1
Ross-Ibarra, J.2
Gaut, B.S.3
-
70
-
-
84871167801
-
The determinants of the molecular substitution process in turtles
-
Lourenço, J., S. Glémin, Y. Chiari, and N. Galtier. 2012. The determinants of the molecular substitution process in turtles. Journal of Evolutionary Biology 26:38-50.
-
(2012)
Journal of Evolutionary Biology
, vol.26
, pp. 38-50
-
-
Lourenço, J.1
Glémin, S.2
Chiari, Y.3
Galtier, N.4
-
71
-
-
65349159321
-
Evolution of mutation rates: Phylogenomic analysis of the photolyase/cryptochrome family
-
Lucas-Lledo, J. I., and M. Lynch. 2009. Evolution of mutation rates: phylogenomic analysis of the photolyase/cryptochrome family. Molecular Biology and Evolution 26:1143-1153.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 1143-1153
-
-
Lucas-Lledo, J.I.1
Lynch, M.2
-
72
-
-
84878610133
-
A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice
-
Luo, D. P., H. Xu, Z. L. Liu, J. X. Guo, H. Y. Li, L. T. Chen, C. Fang, et al. 2013. A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice. Nature Genetics 45:573-577.
-
(2013)
Nature Genetics
, vol.45
, pp. 573-577
-
-
Luo, D.P.1
Xu, H.2
Liu, Z.L.3
Guo, J.X.4
Li, H.Y.5
Chen, L.T.6
Fang, C.7
-
74
-
-
77955090647
-
Evolution of the mutation rate
-
Lynch, M. 2010. Evolution of the mutation rate. Trends in Genetics 26:345-352.
-
(2010)
Trends in Genetics
, vol.26
, pp. 345-352
-
-
Lynch, M.1
-
75
-
-
84878542954
-
A battle between genomes in plant male fertility
-
Ma, H. 2013. A battle between genomes in plant male fertility. Nature Genetics 45:472-473.
-
(2013)
Nature Genetics
, vol.45
, pp. 472-473
-
-
Ma, H.1
-
76
-
-
0033761009
-
Herbivory could unlock mutations sequestered in stratified shoot apices of genetic mosaics
-
Marcotrigiano, M. 2000. Herbivory could unlock mutations sequestered in stratified shoot apices of genetic mosaics. American Journal of Botany 87:355-361.
-
(2000)
American Journal of Botany
, vol.87
, pp. 355-361
-
-
Marcotrigiano, M.1
-
77
-
-
77956698823
-
A test of the snowball theory for the rate of evolution of hybrid incompatibilities
-
Matute, D. R., I. A. Butler, D. A. Turissini, and J. A. Coyne. 2010. A test of the snowball theory for the rate of evolution of hybrid incompatibilities. Science 329:1518-1521.
-
(2010)
Science
, vol.329
, pp. 1518-1521
-
-
Matute, D.R.1
Butler, I.A.2
Turissini, D.A.3
Coyne, J.A.4
-
79
-
-
68849094197
-
Global patterns in plant height
-
Moles, A. T., D. I. Warton, L. Warman, N. G. Swenson, S. W. Laffan, A. E. Zanne, A. Pitman, et al. 2009. Global patterns in plant height. Journal of Ecology 97:923-932.
-
(2009)
Journal of Ecology
, vol.97
, pp. 923-932
-
-
Moles, A.T.1
Warton, D.I.2
Warman, L.3
Swenson, N.G.4
Laffan, S.W.5
Zanne, A.E.6
Pitman, A.7
-
80
-
-
0035823265
-
Consequences of life history for inbreeding depression and mating system evolution in plants
-
Morgan, M. T. 2001. Consequences of life history for inbreeding depression and mating system evolution in plants. Proceedings of the Royal Society B: Biological Sciences 268:1817-1824.
-
(2001)
Proceedings of the Royal Society B: Biological Sciences
, vol.268
, pp. 1817-1824
-
-
Morgan, M.T.1
-
81
-
-
79955373252
-
Newly sequenced nuclear gene (Xdh) for inferring angiosperm phylogeny 1
-
Morton, C. M. 2011. Newly sequenced nuclear gene (Xdh) for inferring angiosperm phylogeny 1. Annals of the Missouri Botanical Garden 98:63-89.
-
(2011)
Annals of the Missouri Botanical Garden
, vol.98
, pp. 63-89
-
-
Morton, C.M.1
-
82
-
-
79952621921
-
The genes underlying the process of speciation
-
Nosil, P., and D. Schluter. 2011. The genes underlying the process of speciation. Trends in Ecology and Evolution 26:160-167.
-
(2011)
Trends in Ecology and Evolution
, vol.26
, pp. 160-167
-
-
Nosil, P.1
Schluter, D.2
-
83
-
-
0027443866
-
An examination of the generation time effect on molecular evolution
-
Ohta, T. 1993. An examination of the generation time effect on molecular evolution. Proceedings of the National Academy of Sciences of the USA 90:10676-10680.
-
(1993)
Proceedings of the National Academy of Sciences of the USA
, vol.90
, pp. 10676-10680
-
-
Ohta, T.1
-
84
-
-
0028942011
-
The population genetics of speciation: The evolution of hybrid incompatibilities
-
Orr, H. A. 1995. The population genetics of speciation: the evolution of hybrid incompatibilities. Genetics 139:1805-1813.
-
(1995)
Genetics
, vol.139
, pp. 1805-1813
-
-
Orr, H.A.1
-
85
-
-
33749615643
-
Large punctuational contribution of speciation to evolutionary divergence at the molecular level
-
Pagel, M., C. Venditti, and A. Meade. 2006. Large punctuational contribution of speciation to evolutionary divergence at the molecular level. Science 314:119-121.
-
(2006)
Science
, vol.314
, pp. 119-121
-
-
Pagel, M.1
Venditti, C.2
Meade, A.3
-
86
-
-
1042304216
-
APE: Analyses of phylogenetics and evolution in R language
-
Paradis, E., J. Claude, and K. Strimmer. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
87
-
-
33845467444
-
Some evolutionary consequences of being a tree. Annual Review of Ecology
-
Petit, R. J., and A. Hampe. 2006. Some evolutionary consequences of being a tree. Annual Review of Ecology, Evolution, and Systematics 37:187-214.
-
(2006)
Evolution, and Systematics
, vol.37
, pp. 187-214
-
-
Petit, R.J.1
Hampe, A.2
-
89
-
-
0034612505
-
Elevated UV-B radiation reduces genome stability in plants
-
Ries, G., W. Heller, H. Puchta, H. Sandermann, H. K. Seidlitz, and B. Hohn. 2000. Elevated UV-B radiation reduces genome stability in plants. Nature 406:98-101.
-
(2000)
Nature
, vol.406
, pp. 98-101
-
-
Ries, G.1
Heller, W.2
Puchta, H.3
Sandermann, H.4
Seidlitz, H.K.5
Hohn, B.6
-
91
-
-
0027043618
-
Latitudinal gradients in species-diversity: The search for the primary cause
-
Rohde, K. 1992. Latitudinal gradients in species-diversity: the search for the primary cause. Oikos 65:514-527.
-
(1992)
Oikos
, vol.65
, pp. 514-527
-
-
Rohde, K.1
-
92
-
-
84863306901
-
Lavaan: An R package for structural equation modeling
-
Rosseel, Y. 2012. lavaan: an R package for structural equation modeling. Journal of Statistical Software 48:1-36.
-
(2012)
Journal of Statistical Software
, vol.48
, pp. 1-36
-
-
Rosseel, Y.1
-
93
-
-
84989432256
-
Estimating rates of speciation and evolution: A bias due to homoplasy
-
Sanderson, M. J. 1990. Estimating rates of speciation and evolution: a bias due to homoplasy. Cladistics 6:387-391.
-
(1990)
Cladistics
, vol.6
, pp. 387-391
-
-
Sanderson, M.J.1
-
94
-
-
0015927177
-
Generation time and genomic evolution in primates
-
Sarich, V. M., and A. C. Wilson. 1973. Generation time and genomic evolution in primates. Science 179:1144-1147.
-
(1973)
Science
, vol.179
, pp. 1144-1147
-
-
Sarich, V.M.1
Wilson, A.C.2
-
95
-
-
70149104014
-
Mutation accumulation in real branches: Fitness assays for genomic deleterious mutation rate and effect in large-statured plants
-
Schultz, S. T., and D. G. Scofield. 2009. Mutation accumulation in real branches: fitness assays for genomic deleterious mutation rate and effect in large-statured plants. American Naturalist 174:163-175.
-
(2009)
American Naturalist
, vol.174
, pp. 163-175
-
-
Schultz, S.T.1
Scofield, D.G.2
-
96
-
-
0003945695
-
Cause and correlation in biology: A user’s guide to path analysis
-
Cambridge University Press, Cambridge
-
Shipley, B. 2002. Cause and correlation in biology: a user’s guide to path analysis, structural equations and causal inference. Cambridge University Press, Cambridge.
-
(2002)
Structural Equations and Causal Inference
-
-
Shipley, B.1
-
97
-
-
53349160132
-
Rates of molecular evolution are linked to life history in flowering plants
-
Smith, S. A., and M. J. Donoghue. 2008. Rates of molecular evolution are linked to life history in flowering plants. Science 322:86-89.
-
(2008)
Science
, vol.322
, pp. 86-89
-
-
Smith, S.A.1
Donoghue, M.J.2
-
99
-
-
84863337944
-
Angiosperm phylogeny: 17 genes, 640 taxa
-
Soltis, D. E., S. A. Smith, N. Cellinese, K. J. Wurdack, D. C. Tank, S. F. Brockington, N. F. Refulio-Rodriguez, et al. 2011. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98:704-730.
-
(2011)
American Journal of Botany
, vol.98
, pp. 704-730
-
-
Soltis, D.E.1
Smith, S.A.2
Cellinese, N.3
Wurdack, K.J.4
Tank, D.C.5
Brockington, S.F.6
Refulio-Rodriguez, N.F.7
-
100
-
-
84255177729
-
What can patterns of differentiation across plant genomes tell us about adaptation and speciation?
-
Strasburg, J. L., N. A. Sherman, K. M. Wright, L. C. Moyle, J. H. Willis, and L. H. Rieseberg. 2012. What can patterns of differentiation across plant genomes tell us about adaptation and speciation? Philosophical Transactions of the Royal Society B: Biological Sciences 367:364-373.
-
(2012)
Philosophical Transactions of the Royal Society B: Biological Sciences
, vol.367
, pp. 364-373
-
-
Strasburg, J.L.1
Sherman, N.A.2
Wright, K.M.3
Moyle, L.C.4
Willis, J.H.5
Rieseberg, L.H.6
-
101
-
-
0027029843
-
Variation in UV-B sensitivity in plants from a 3,000-m elevational gradient in Hawaii
-
Sullivan, J. H., A. H. Teramura, and L. H. Ziska. 1992. Variation in UV-B sensitivity in plants from a 3,000-m elevational gradient in Hawaii. American Journal of Botany 79:737-743.
-
(1992)
American Journal of Botany
, vol.79
, pp. 737-743
-
-
Sullivan, J.H.1
Teramura, A.H.2
Ziska, L.H.3
-
102
-
-
84868579284
-
Extraordinary genome stability in the ciliate Paramecium tetraurelia
-
Sung, W., A. E. Tucker, T. G. Doak, E. Choi, W. K. Thomas, and M. Lynch. 2012. Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proceedings of the National Academy of Sciences of the USA 109:19339-19344.
-
(2012)
Proceedings of the National Academy of Sciences of the USA
, vol.109
, pp. 19339-19344
-
-
Sung, W.1
Tucker, A.E.2
Doak, T.G.3
Choi, E.4
Thomas, W.K.5
Lynch, M.6
-
104
-
-
77951527579
-
A generation time effect on the rate of molecular evolution in invertebrates
-
Thomas, J. A., J. J. Welch, R. Lanfear, and L. Bromham. 2010. A generation time effect on the rate of molecular evolution in invertebrates. Molecular Biology and Evolution 27:1173-1180.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 1173-1180
-
-
Thomas, J.A.1
Welch, J.J.2
Lanfear, R.3
Bromham, L.4
-
105
-
-
33749602096
-
Detecting the nodedensity artifact in phylogeny reconstruction
-
Venditti, C., A. Meade, and M. Pagel. 2008. Detecting the nodedensity artifact in phylogeny reconstruction. Systematic Biology 55:637-643.
-
(2008)
Systematic Biology
, vol.55
, pp. 637-643
-
-
Venditti, C.1
Meade, A.2
Pagel, M.3
-
106
-
-
72049102605
-
Speciation as an active force in promoting genetic evolution
-
Venditti, C., and M. Pagel. 2009. Speciation as an active force in promoting genetic evolution. Trends in Ecology and Evolution 25:14-20.
-
(2009)
Trends in Ecology and Evolution
, vol.25
, pp. 14-20
-
-
Venditti, C.1
Pagel, M.2
-
107
-
-
69249230917
-
Extra petals in the buttercup (Ranunculus repens) provide a quick method to estimate the age of meadows
-
Warren, J. 2009. Extra petals in the buttercup (Ranunculus repens) provide a quick method to estimate the age of meadows. Annals of Botany 104:785-788.
-
(2009)
Annals of Botany
, vol.104
, pp. 785-788
-
-
Warren, J.1
-
108
-
-
0041843801
-
Molecular phylogenies link rates of evolution and speciation
-
Webster, A. J., R. J. H. Payne, and M. Pagel. 2003. Molecular phylogenies link rates of evolution and speciation. Science 301:478.
-
(2003)
Science
, vol.301
, pp. 478
-
-
Webster, A.J.1
Payne, R.J.2
Pagel, M.3
-
109
-
-
3042626948
-
Accumulating Dobzhansky-Muller incompatibilities: Reconciling theory and data
-
Welch, J. J. 2004. Accumulating Dobzhansky-Muller incompatibilities: reconciling theory and data. Evolution 58:1145-1156.
-
(2004)
Evolution
, vol.58
, pp. 1145-1156
-
-
Welch, J.J.1
-
110
-
-
41049094758
-
Calculating independent contrasts for the comparative study of substitution rates
-
Welch, J. J., and D. Waxman. 2008. Calculating independent contrasts for the comparative study of substitution rates. Journal of Theoretical Biology 251:667-678.
-
(2008)
Journal of Theoretical Biology
, vol.251
, pp. 667-678
-
-
Welch, J.J.1
Waxman, D.2
-
111
-
-
77957371765
-
A role for nonadaptive processes in plant genome size evolution?
-
Whitney, K. D., E. J. Baack, J. L. Hamrick, M. J. W. Godt, B. C. Barringer, M. D. Bennett, C. G. Eckert, et al. 2010. A role for nonadaptive processes in plant genome size evolution? Evolution 64: 2097-2109.
-
(2010)
Evolution
, vol.64
, pp. 2097-2109
-
-
Whitney, K.D.1
Baack, E.J.2
Hamrick, J.L.3
Godt, M.J.4
Barringer, B.C.5
Bennett, M.D.6
Eckert, C.G.7
-
112
-
-
0036274061
-
Male-driven evolution of mitochondrial and chloroplastidial DNA sequences in plants
-
Whittle, C.-A., and M. O. Johnston. 2002. Male-driven evolution of mitochondrial and chloroplastidial DNA sequences in plants. Molecular Biology and Evolution 19:938-949.
-
(2002)
Molecular Biology and Evolution
, vol.19
, pp. 938-949
-
-
Whittle, C.-A.1
Johnston, M.O.2
-
113
-
-
69249197880
-
Variability in thermal and UV-B energy fluxes through time and their influence on plant diversity and speciation
-
Willis, K. J., K. D. Bennett, and H. J. B. Birks. 2009. Variability in thermal and UV-B energy fluxes through time and their influence on plant diversity and speciation. Journal of Biogeography 36: 1630-1644.
-
(2009)
Journal of Biogeography
, vol.36
, pp. 1630-1644
-
-
Willis, K.J.1
Bennett, K.D.2
Birks, H.J.3
-
114
-
-
67649118282
-
Effective population size and the rate and pattern of nucleotide substitutions
-
Woolfit, M. 2009. Effective population size and the rate and pattern of nucleotide substitutions. Biology Letters 5:417-420.
-
(2009)
Biology Letters
, vol.5
, pp. 417-420
-
-
Woolfit, M.1
-
115
-
-
0041695491
-
Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes
-
Woolfit, M., and L. Bromham. 2003. Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes. Molecular Biology and Evolution 20:1545-1555.
-
(2003)
Molecular Biology and Evolution
, vol.20
, pp. 1545-1555
-
-
Woolfit, M.1
Bromham, L.2
-
118
-
-
79951559011
-
Energy and the tempo of evolution in amphibians
-
Wright, S. D., L. N. Gillman, H. A. Ross, and D. J. Keeling. 2010. Energy and the tempo of evolution in amphibians. Global Ecology and Biogeography 19:733-740.
-
(2010)
Global Ecology and Biogeography
, vol.19
, pp. 733-740
-
-
Wright, S.D.1
Gillman, L.N.2
Ross, H.A.3
Keeling, D.J.4
-
120
-
-
79951949986
-
Thermal energy and the rate of genetic evolution in marine fishes
-
Wright, S. D., H. A. Ross, D. J. Keeling, P. McBride, and L. N. Gillman. 2011. Thermal energy and the rate of genetic evolution in marine fishes. Evolutionary Ecology 25:525-530.
-
(2011)
Evolutionary Ecology
, vol.25
, pp. 525-530
-
-
Wright, S.D.1
Ross, H.A.2
Keeling, D.J.3
McBride, P.4
Gillman, L.N.5
-
121
-
-
34547803197
-
PAML: A program package for phylogenetic analysis bymaximumlikelihood
-
Yang, Z. 2007. PAML: a program package for phylogenetic analysis bymaximumlikelihood. Molecular Biology and Evolution 24:1586-1591. http://abacus.gene.ucl.ac.uk/software/paml.html.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
122
-
-
84881615433
-
Variations in the structure and transcription of the mitochondrial atp and cox genes in wild Solanum species that induce male sterility in eggplant (S. Melongena)
-
Yoshimi, M., Y. Kitamura, S. Isshiki, T. Saito, K. Yasumoto, T. Terachi, and H. Yamagishi. 2013. Variations in the structure and transcription of the mitochondrial atp and cox genes in wild Solanum species that induce male sterility in eggplant (S. melongena). Theoretical and Applied Genetics 126:1851-1859.
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(2013)
Theoretical and Applied Genetics
, vol.126
, pp. 1851-1859
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Yoshimi, M.1
Kitamura, Y.2
Isshiki, S.3
Saito, T.4
Yasumoto, K.5
Terachi, T.6
Yamagishi, H.7
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