Speciation as an active force in promoting genetic evolution

Trends in Ecology and Evolution

Volumn 25, Issue 1, 2010, Pages 14-20

  Venditti, Chris ^a   Pagel, Mark ^a,b  

^a UNIVERSITY OF READING   (United Kingdom)

^b SANTA FE INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIVERGENCE; EVOLUTIONARY BIOLOGY; MOLECULAR ECOLOGY; NATURAL SELECTION; NICHE; PHYLOGENY; SPECIATION (BIOLOGY);

ANIMAL; ARTICLE; MOLECULAR EVOLUTION; PHYLOGENY; SPECIES DIFFERENTIATION;

ANIMALS; EVOLUTION, MOLECULAR; GENETIC SPECIATION; PHYLOGENY;

EID: 72049102605     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tree.2009.06.010     Document Type: Article

References (99)

1. Barton N.H., and Charlesworth B. Genetic revolutions, founder effects, and speciation. Annu. Rev. Ecol. Syst. 15 (1984) 133-164
2. Otto S.P., and Whitlock M.C. The probability of fixation in populations of changing size. Genetics 146 (1997) 723-733
3. Pomiankowski A., and Iwasa Y. Runaway ornament diversity caused by Fisherian sexual selection. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 5106-5111
4. Lande R. Models of speciation by sexual selection on polygenic traits. Proc. Natl. Acad. Sci. U. S. A. 78 (1981) 3721-3725
5. Dieckmann U., and Doebeli M. On the origin of species by sympatric speciation. Nature 400 (1999) 354-357
6. Via S. Sympatric speciation in animals: the ugly duckling grows up. Trends Ecol. Evol. 16 (2001) 381-390
7. Savolainen V., et al. Sympatric speciation in palms on an oceanic island. Nature 441 (2006) 210-213
8. Bolnick D.I., and Fitzpatrick B.M. Sympatric speciation: models and empirical evidence. Annu. Rev. Ecol., Evol. Syst. 38 (2007) 459-487
9. Barluenga M., et al. Sympatric speciation in Nicaraguan crater lake cichlid fish. Nature 439 (2006) 719-723
10. Greenwood P.H. The cichlid fishes of Lake Victoria, East Africa: the biology and evolution of a species flock. Bull. Br. Mus. Nat. His. (Zool.) Suppl. 6 (1974) 1-134
11. Meyer A. Phylogenetic relationships and evolutionary processes in East African cichlid fishes. Trends Ecol. Evol. 8 (1993) 279-284
12. Egger B., et al. Nuclear and mitochondrial data reveal different evolutionary processes in the Lake Tanganyika cichlid genus Tropheus. BMC Evol. Biol. 7 (2007) 137
13. Hughes C., and Eastwood R. Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 10334-10339
14. Pagel M., et al. Large punctuational contribution of speciation to evolutionary divergence at the molecular level. Science 314 (2006) 119-121
15. Mayr E. Animal Species and Evolution (1963), Harvard University Press
16. Carson H.L., and Templeton A.R. Genetic revolutions in relation to speciation phenomena: the founding of new populations. Annu. Rev. Ecol. Syst. 15 (1984) 97-132
17. Gavrilets S., and Hastings A. Founder effect speciation: a theoretical reassessment. Am. Nat. 147 (1996) 466
18. Harrison R.G. Molecular changes at speciation. Annu. Rev. Ecol. Syst. 22 (1991) 281-308
19. Avise J.C., and Ayala F.J. Genetic change and rates of cladogenesis. Genetics 81 (1975) 757-773
20. Avise J.C., and Ayala F.J. Genetic differentiation in speciose versus depauperate phylads: evidence from the California minnows. Evolution 30 (1976) 46-58
21. Avise J.C. Is evolution gradual or rectangular? Evidence from living fishes. Proc. Natl. Acad. Sci. U. S. A. 74 (1977) 5083-5087
22. Douglas M.E., and Avise J.C. Speciation rates and morphological divergence in fishes: tests of gradual versus rectangular modes of evolutionary change. Evolution (1982) 224-232
23. Mindell D.P., et al. Speciational evolution: a phylogenetic test with allozymes in Sceloporus (Reptilia). Cladistics 5 (1989) 49-61
24. Barraclough T.G., and Savolainen V. Evolutionary rates and species diversity in flowering plants. Evolution 55 (2001) 677-683
25. Xiang Q.Y., et al. Regional differences in rates of plant speciation and molecular evolution: a comparison between eastern Asia and eastern North America. Evolution 58 (2004) 2175-2184
26. Leitch I.J., et al. Punctuated genome size evolution in Liliaceae. J. Evol. Biol. 20 (2007) 2296
27. Webster A.J., et al. Molecular phylogenies link rates of evolution and speciation. Science 301 (2003) 478
28. Freckleton R.P., et al. Relating traits to diversification: a simple test. Am. Nat. 172 (2008) 102-115
29. Fitch W.M., and Bruschi M. The evolution of prokaryotic ferredoxins - with a general method correcting for unobserved substitutions in less branched lineages. Mol. Biol. Evol. 4 (1987) 381-394
30. Fitch W.M., and Beintema J.J. Correcting parsimonious trees for unseen nucleotide substitutions: the effect of dense branching as exemplified by ribonuclease. Mol. Biol. Evol. 7 (1990) 438-443
31. Venditti C., et al. Detecting the node-density artifact in phylogeny reconstruction. Syst. Biol. 55 (2006) 637-643
32. Venditti C., et al. Phylogenetic mixture models can reduce node-density artifacts. Syst. Biol. 57 (2008) 286-293
33. Ohta T. Slightly deleterious mutant substitutions in evolution. Nature 246 (1973) 96-98
34. Charlesworth J., and Eyre-Walker A. The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 16992-16997
35. Losos J.B., et al. Adaptive differentiation following experimental island colonization in Anolis lizards. Nature 387 (1997) 70-73
36. Losos J.B., et al. Rapid temporal reversal in predator-driven natural selection. Science 314 (2006) 1111
37. Thompson J.N. Rapid evolution as an ecological process. Trends Ecol. Evol. 13 (1998) 329-332
38. Huey R.B., et al. Rapid evolution of a geographic cline in size in an introduced fly. Science 287 (2000) 308-309
39. Seehausen O., et al. Speciation through sensory drive in cichlid fish. Nature 455 (2008) 620
40. Butler M.A., et al. Sexual dimorphism and adaptive radiation in Anolis lizards. Nature 447 (2007) 202-205
41. Lenski R.E., and Travisano M. Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. Proc. Natl. Acad. Sci. U. S. A. 91 (1994) 6808-6814
42. Cooper V.S., and Lenski R.E. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407 (2000) 736-739
43. Elena S.F., and Lenski R.E. Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4 (2003) 457-469
44. Seddon N., et al. Sexually selected traits predict patterns of species richness in a diverse clade of suboscine birds. Am. Nat. 171 (2008) 620-631
45. Boul K.E., et al. Sexual selection drives speciation in an Amazonian frog. Proc. R. Soc. B Biol. Sci. 274 (2007) 399-406
46. Ritchie M.G. Sexual selection and speciation. Annu. Rev. Ecol. Evol. Syst. 38 (2007) 79-102
47. Soltis D.E., et al. The floral genome: an evolutionary history of gene duplication and shifting patterns of gene expression. Trends Plant Sci. 12 (2007) 358-367
48. Soltis D.E., et al. Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogenetic, genomic and genetic comparisons. Biol. J. Linn. Soc. 82 (2004) 485-501
49. Woods T.E. The frequency of polyploid speciation in vascular plants. PNAS 106 (2009) 13875-13879
50. Coyne J.A., and Orr H.A. Speciation (2004), Sinauer Associates
51. Ramsey J., and Schemske D.W. Neopolyploidy in flowering plants. Annu. Rev. Ecol. Syst. 33 (2002) 589-639
52. Otto S.P. The evolutionary consequences of polyploidy. Cell 131 (2007) 452-462
53. Leitch A.R., and Leitch I.J. Genomic plasticity and the diversity of polyploid plants. Science 320 (2008) 481-483
54. Jackson J.A., and Tinsley R.C. Parasite infectivity to hybridising host species: a link between hybrid resistance and allopolyploid speciation?. Int. J. Parasitol. 33 (2003) 137-144
55. Levin D.A. Polyploidy and novelty in flowering plants. Am. Nat. 122 (1983) 1-25
56. Gregory T.R., and Mable B.K. Polyploidy in animals. In: Gregory T.R. (Ed). The Evolution of the Genome (2005), Academic Press 428-501
57. Dobzhansky T.G. Genetics and the Origin of Species (1937), Columbia University Press
58. White M.J.D. Animal Cytology and Evolution (1973), Cambridge University Press
59. Kuryshev V.Y., et al. An anthropoid-specific segmental duplication on human chromosome 1q22. Genomics 88 (2006) 143-151
60. Lukhtanov V.A., et al. Reinforcement of pre-zygotic isolation and karyotype evolution in Agrodiaetus butterflies. Nature 436 (2005) 385-389
61. Kandul N.P., et al. Karyotypic diversity and speciation in Agrodiaetus butterflies. Evolution 61 (2007) 546-559
62. Noor M.A.F., et al. Chromosomal inversions and the reproductive isolation of species. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 12084-12088
63. Rieseberg L.H. Chromosomal rearrangements and speciation. Trends Ecol. Evol. 16 (2001) 351-358
64. Ayala F.J., and Coluzzi M. Chromosome speciation: humans, Drosophila, and mosquitoes. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 6535-6542
65. Masly J.P., et al. Gene transposition as a cause of hybrid sterility in Drosophila. Science 313 (2006) 1448-1450
66. Storz J.F., and Hoekstra H.E. The study of adaptation and speciation in the genomic era. J. Mammal. 88 (2007) 1-4
67. Marques-Bonet T., et al. A burst of segmental duplications in the genome of the African great ape ancestor. Nature 457 (2009) 877-881
68. King M. Species Evolution: The Role of Chromosome Change (1995), Cambridge University Press
69. Feder J.L., et al. Evidence for inversion polymorphism related to sympatric host race formation in the apple maggot fly. Rhagoletis pomonella. Genetics 163 (2003) 939-953
70. Joron M., et al. Heliconius wing patterns: an evo-devo model for understanding phenotypic diversity. Heredity 97 (2006) 157-167
71. Navarro A., and Barton N.H. Chromosomal speciation and molecular divergence - accelerated evolution in rearranged chromosomes. Science 300 (2003) 321-324
72. Liu B., and Wendel J.F. Epigenetic phenomena and the evolution of plant allopolyploids. Mol. Phylog. Evol. 29 (2003) 365-379
73. O'Neill R.J., et al. Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid. Nature 393 (1998) 68-72
74. Jablonka E., and Lamb M.J. Epigenetic inheritance in evolution. J. Evol. Biol. 11 (1998) 159-183
75. Pál C., and Miklós I. Epigenetic inheritance, genetic assimilation and speciation. J. Theor. Biol. 200 (1999) 19-37
76. Jablonka E., and Lamb M. Epigenetic Inheritance and Evolution: The Lamarckian Dimension (1995), Oxford University Press
77. Scannell D.R., et al. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440 (2006) 341-345
78. Katju V., and Lynch M. On the formation of novel genes by duplication in the Caenorhabditis elegans genome. Mol. Biol. Evol. 23 (2006) 1056-1067
79. Sémon M., and Wolfe K.H. Consequences of genome duplication. Curr. Opin. Genet. Dev. 17 (2007) 505-512
80. Gaut B.S., et al. Recombination: an underappreciated factor in the evolution of plant genomes. Nat. Rev. Genet. 8 (2007) 77-84
81. Lee I., et al. A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nat. Genet. 40 (2008) 181-188
82. Bonneau R., et al. A predictive model for transcriptional control of physiology in a free living cell. Cell 131 (2007) 1354-1365
83. The Chimpanzee Sequencing and Analysis Consortium (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437, 69-87
84. Mallet J. Hybrid speciation. Nature 446 (2007) 279-283
85. Baack E.J., and Rieseberg L.H. A genomic view of introgression and hybrid speciation. Curr. Opin. Genet. Dev. 17 (2007) 513-518
86. Mavárez J., et al. Speciation by hybridization in Heliconius butterflies. Nature 441 (2006) 868-871
87. Rieseberg L.H. Crossing relationships among ancient and experimental sunflower hybrid lineages. Evolution 54 (2000) 859-865
88. Lartillot N., and Philippe H. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 21 (2004) 1095-1109
89. Lewis R.L., et al. The phylogeny of the subgroups within the melanogaster species group: likelihood tests on COI and COII sequences and a Bayesian estimate of phylogeny. Mol. Biol. Evol. 37 (2006) 15-24
90. Pagel M., and Meade A. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst. Biol. 53 (2004) 571-581
91. Pagel M., and Meade A. Mixture models in phylogenetic inference. In: Gascuel O. (Ed). Mathematics of Evolution and Phylogeny (2005), Oxford University Press 121-139
92. Philippe H., et al. Heterotachy and long-branch attraction in phylogenetics. BMC Evol. Biol. 5 (2005) 50
93. Simon C., et al. Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA. Annu. Rev. Ecol. Evol. Syst. 37 (2006) 545-579
94. Nadeau N.J., et al. Evolution of an avian pigmentation gene correlates with a measure of sexual selection. Proc. R. Soc. B Biol. Sci. 274 (2007) 1807-1813
95. Ali F., and Meier R. Positive selection in ASPM Is correlated with cerebral cortex evolution across primates but not with whole-brain size. Mol. Biol. Evol. 25 (2008) 2247-2250
96. Webb S.A., et al. Molecular phylogeny of the livebearing Goodeidae (Cyprinodontiformes). Mol. Phylogen. Evol. 30 (2004) 527-544
97. Ritchie M.G., et al. Sex and differentiation: population genetic divergence and sexual dimorphism in Mexican goodeid fish. J. Evol. Biol. 20 (2007) 2048-2055
98. Ritchie M.G., et al. Patterns of speciation in endemic Mexican goodeid fish: sexual conflict or early radiation?. J. Evol. Biol. 18 (2005) 922-929
99. Yang Z. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15 (1998) 568-573