메뉴 건너뛰기




Volumn 110, Issue 3, 2015, Pages 353-362

A nuclear ribosomal DNA pseudogene in triatomines opens a new research field of fundamental and applied implications in Chagas disease

Author keywords

Chagas disease; Free energy; Functionality; rDNA pseudogene; Secondary structures; Triatomines

Indexed keywords

RIBOSOMAL SPACER DNA; RNA 5.8S;

EID: 84928114785     PISSN: 00740276     EISSN: 16788060     Source Type: Journal    
DOI: 10.1590/0074-02760140398     Document Type: Article
Times cited : (13)

References (55)
  • 1
    • 0346155809 scopus 로고    scopus 로고
    • Pseudogenes: Are they “junk” or functional DNA?
    • Balakirev ES, Ayala FJ 2003. Pseudogenes: are they “junk” or functional DNA? Annu Rev Genet 237: 123-151.
    • (2003) Annu Rev Genet , vol.237 , pp. 123-151
    • Balakirev, E.S.1    Ayala, F.J.2
  • 4
    • 19044378428 scopus 로고    scopus 로고
    • Triatomine vectors of Trypanosoma cruzi: A molecular perspective based on nuclear ribosomal DNA markers
    • Bargues MD, Marcilla A, Dujardin JP, Mas-Coma S 2002. Triatomine vectors of Trypanosoma cruzi: a molecular perspective based on nuclear ribosomal DNA markers. Trans R Soc Trop Med Hyg 96: 159-164.
    • (2002) Trans R Soc Trop Med Hyg , vol.96 , pp. 159-164
    • Bargues, M.D.1    Marcilla, A.2    Dujardin, J.P.3    Mas-Coma, S.4
  • 5
    • 0034222148 scopus 로고    scopus 로고
    • Nuclear rDNA-based molecular clock of the evolution of Triatominae (Hemiptera: Reduviidae), vectors of Chagas disease
    • Bargues MD, Marcilla A, Ramsey JM, Dujardin JP, Schofield CJ, Mas-Coma S 2000. Nuclear rDNA-based molecular clock of the evolution of Triatominae (Hemiptera: Reduviidae), vectors of Chagas disease. Mem Inst Oswaldo Cruz 95: 567-573.
    • (2000) Mem Inst Oswaldo Cruz , vol.95 , pp. 567-573
    • Bargues, M.D.1    Marcilla, A.2    Ramsey, J.M.3    Dujardin, J.P.4    Schofield, C.J.5    Mas-Coma, S.6
  • 6
    • 84888784225 scopus 로고    scopus 로고
    • Nuclear rDNA pseudogenes in Chagas disease vectors: Evolutionary implications of a new 5.8S+ITS-2 paralogous sequence marker in triatomines of North, Central and Northern South America
    • Bargues MD, Zuiaga MA, Mas-Coma S 2014. Nuclear rDNA pseudogenes in Chagas disease vectors: evolutionary implications of a new 5.8S+ITS-2 paralogous sequence marker in triatomines of North, Central and Northern South America. Infect Genet Evol 21: 134-156.
    • (2014) Infect Genet Evol , vol.21 , pp. 134-156
    • Bargues, M.D.1    Zuiaga, M.A.2    Mas-Coma, S.3
  • 8
    • 0002239106 scopus 로고    scopus 로고
    • Pseudogenes and their formation
    • BIOS Scientific Publishers, Oxford
    • Cooper DN 1999. Pseudogenes and their formation. In DN Cooper, Human gene evolution, BIOS Scientific Publishers, Oxford, p. 265-285.
    • DN Cooper, Human Gene Evolution , pp. 265-285
    • Cooper, D.N.1
  • 9
    • 17344384770 scopus 로고    scopus 로고
    • Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast
    • Côté CA, Peculis BA 2001. Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast. Nucleic Acids Res 29: 2106-2116.
    • (2001) Nucleic Acids Res , vol.29 , pp. 2106-2116
    • Côté, C.A.1    Peculis, B.A.2
  • 10
    • 0009847079 scopus 로고    scopus 로고
    • Population genetics and the natural history of domestication in Triatominae
    • Dujardin JP 1998. Population genetics and the natural history of domestication in Triatominae. Mem Inst Oswaldo Cruz 93 (Suppl. II): 34-36.
    • (1998) Mem Inst Oswaldo Cruz , vol.93 , pp. 34-36
    • Dujardin, J.P.1
  • 12
    • 0033941152 scopus 로고    scopus 로고
    • Calculation and verification of the ages of retroprocessed pseudogenes
    • Friedberg F, Rhoads AR 2000. Calculation and verification of the ages of retroprocessed pseudogenes. Mol Phylogenet Evol 16: 127-130.
    • (2000) Mol Phylogenet Evol , vol.16 , pp. 127-130
    • Friedberg, F.1    Rhoads, A.R.2
  • 13
    • 70350134886 scopus 로고
    • Pseudogenes and origins
    • Gibson LJ 1994. Pseudogenes and origins. Origins 21: 91-108.
    • (1994) Origins , vol.21 , pp. 91-108
    • Gibson, L.J.1
  • 14
    • 84875054478 scopus 로고    scopus 로고
    • Evaluation of the authenticity of a highly novel environmental sequence from boreal forest soil using ribosomal RNA secondary structure modeling
    • Glass DJ, Takebayashi N, Olson LE, Taylor DL 2013. Evaluation of the authenticity of a highly novel environmental sequence from boreal forest soil using ribosomal RNA secondary structure modeling. Mol Phylogenet Evol 67: 234-245.
    • (2013) Mol Phylogenet Evol , vol.67 , pp. 234-245
    • Glass, D.J.1    Takebayashi, N.2    Olson, L.E.3    Taylor, D.L.4
  • 15
    • 33747066408 scopus 로고    scopus 로고
    • The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans
    • Gray TA, Wilson A, Fortin PJ, Nicholls RD 2006. The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans. Proc Natl Acad Sci USA 103: 12039-12044.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12039-12044
    • Gray, T.A.1    Wilson, A.2    Fortin, P.J.3    Nicholls, R.D.4
  • 16
    • 20644472668 scopus 로고    scopus 로고
    • Microsatellite instability generates diversity in brain and sociobehavioral traits
    • Hammock EAD, Young LJ 2005. Microsatellite instability generates diversity in brain and sociobehavioral traits. Science 308: 1630-1634.
    • (2005) Science , vol.308 , pp. 1630-1634
    • Hammock, E.1    Young, L.J.2
  • 17
    • 33750955647 scopus 로고    scopus 로고
    • Non-concerted ITS evolution in Mammillaria (Cactaceae)
    • Harpke D, Peterson A 2006. Non-concerted ITS evolution in Mammillaria (Cactaceae). Mol Phylogenet Evol 41: 579-593.
    • (2006) Mol Phylogenet Evol , vol.41 , pp. 579-593
    • Harpke, D.1    Peterson, A.2
  • 18
    • 17844396017 scopus 로고    scopus 로고
    • Transcribed processed pseudogenes in the human genome: An intermediate form of expressed retrosequence lacking protein-coding ability
    • Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M 2005. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res 33: 2374-2383.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2374-2383
    • Harrison, P.M.1    Zheng, D.2    Zhang, Z.3    Carriero, N.4    Gerstein, M.5
  • 21
    • 33846909074 scopus 로고    scopus 로고
    • Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta)
    • Hunter RL, Lajeunese TC, Santos SR 2007. Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta). J Phycol 43: 120-128.
    • (2007) J Phycol , vol.43 , pp. 120-128
    • Hunter, R.L.1    Lajeunese, T.C.2    Santos, S.R.3
  • 22
    • 26444576776 scopus 로고    scopus 로고
    • Boltzmann’s constant, the energy meaning of temperature and thermodynamic irreversibility
    • Kalinin MI, Kononogov SA 2005. Boltzmann’s constant, the energy meaning of temperature and thermodynamic irreversibility. Meas Tech 48: 632-636.
    • (2005) Meas Tech , vol.48 , pp. 632-636
    • Kalinin, M.I.1    Kononogov, S.A.2
  • 23
    • 33750441121 scopus 로고    scopus 로고
    • Ribosomal DNA in the grasshopper Podisma pedestris: Escape from concerted evolution
    • Keller I, Chintauan-Marquier IC, Veltsos, P, Nichols RA 2006. Ribosomal DNA in the grasshopper Podisma pedestris: escape from concerted evolution. Genetics 174: 863-874.
    • (2006) Genetics , vol.174 , pp. 863-874
    • Keller, I.1    Chintauan-Marquier, I.C.2    Veltsos, P.3    Nichols, R.A.4
  • 24
    • 34548389222 scopus 로고    scopus 로고
    • Intragenomic rDNA ITS2 variation in the Neotropical Anopheles (Nyssorhynchus) albitarsis complex (Diptera: Culicidae)
    • Li C, Wilkerson RC 2007. Intragenomic rDNA ITS2 variation in the Neotropical Anopheles (Nyssorhynchus) albitarsis complex (Diptera: Culicidae). J Hered 98: 51-59.
    • (2007) J Hered , vol.98 , pp. 51-59
    • Li, C.1    Wilkerson, R.C.2
  • 25
    • 79551535532 scopus 로고    scopus 로고
    • Computing the partition function for kinetically trapped RNA secondary structures
    • Lorenz WA, Clote P 2011. Computing the partition function for kinetically trapped RNA secondary structures. PLoS ONE 6: e16178.
    • (2011) Plos ONE , vol.6
    • Lorenz, W.A.1    Clote, P.2
  • 26
    • 10644281388 scopus 로고    scopus 로고
    • Are both sympatric species Ilex perado and Ilex canariensis secretly hybridizing? Indication from nuclear markers collected in Tenerife
    • Manen JF 2004. Are both sympatric species Ilex perado and Ilex canariensis secretly hybridizing? Indication from nuclear markers collected in Tenerife. BMC Evol Biol 4: 46.
    • (2004) BMC Evol Biol , vol.4 , pp. 46
    • Manen, J.F.1
  • 27
    • 0037744566 scopus 로고    scopus 로고
    • Pseudogenes contribute to extreme diversity of nuclear ribosomal DNA in the hard coral Acropora
    • Márquez LM, Miller DJ, Mackenzie JB, Van Oppen MJM 2003. Pseudogenes contribute to extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Mol Biol Evol 20: 1077-1086.
    • (2003) Mol Biol Evol , vol.20 , pp. 1077-1086
    • Márquez, L.M.1    Miller, D.J.2    Mackenzie, J.B.3    Van Oppen, M.4
  • 28
    • 64449087015 scopus 로고    scopus 로고
    • Populations, hybrids and the systematic concepts of species and subspecies in Chagas disease triatomine vectors inferred from nuclear ribosomal and mitochondrial DNA
    • Mas-Coma S, Bargues MD 2009. Populations, hybrids and the systematic concepts of species and subspecies in Chagas disease triatomine vectors inferred from nuclear ribosomal and mitochondrial DNA. Acta Trop 110: 112-136.
    • (2009) Acta Trop , vol.110 , pp. 112-136
    • Mas-Coma, S.1    Bargues, M.D.2
  • 29
    • 2442626706 scopus 로고    scopus 로고
    • Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
    • Mathews DH, Disney MD, Childs JL, Schroeder S, Zuker M, Turner DH 2004. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci USA 101: 7287-7292.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7287-7292
    • Mathews, D.H.1    Disney, M.D.2    Childs, J.L.3    Schroeder, S.4    Zuker, M.5    Turner, D.H.6
  • 31
    • 31444445966 scopus 로고    scopus 로고
    • Retroposition of processed pseudogenes: The impact of RNA stability and translational control
    • Pavlicek A, Gentles AJ, Paces J, Paces V, Jurka J 2006. Retroposition of processed pseudogenes: the impact of RNA stability and translational control. Trends Genet 22: 69-73.
    • (2006) Trends Genet , vol.22 , pp. 69-73
    • Pavlicek, A.1    Gentles, A.J.2    Paces, J.3    Paces, V.4    Jurka, J.5
  • 33
    • 2442516230 scopus 로고    scopus 로고
    • Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: A case study from Naucleeae (Rubiaceae)
    • Razafimandimbison SG, Kellogg E, Bremer B 2004. Recent origin and phylogenetic utility of divergent ITS putative pseudogenes: a case study from Naucleeae (Rubiaceae). Syst Biol 53: 177-192.
    • (2004) Syst Biol , vol.53 , pp. 177-192
    • Razafimandimbison, S.G.1    Kellogg, E.2    Bremer, B.3
  • 34
    • 54549127139 scopus 로고    scopus 로고
    • Comparative genomics and molecular dynamics of DNA repeats in eukaryotes
    • Richard GF, Kerrest A, Dujon B 2008. Comparative genomics and molecular dynamics of DNA repeats in eukaryotes. Microbiol Mol Biol Rev 72: 686-727.
    • (2008) Microbiol Mol Biol Rev , vol.72 , pp. 686-727
    • Richard, G.F.1    Kerrest, A.2    Dujon, B.3
  • 35
    • 33846442377 scopus 로고    scopus 로고
    • Phylogeographic split in Buxus balearica (Buxaceae) as evidenced by nuclear ribosomal markers: When ITS paralogues are welcome
    • Roselló JA, Lázaro A, Cosín R, Molins A 2007. Phylogeographic split in Buxus balearica (Buxaceae) as evidenced by nuclear ribosomal markers: when ITS paralogues are welcome. J Mol Evol 64: 143-157.
    • (2007) J Mol Evol , vol.64 , pp. 143-157
    • Roselló, J.A.1    Lázaro, A.2    Cosín, R.3    Molins, A.4
  • 36
    • 70350117875 scopus 로고    scopus 로고
    • Current trends in pseudogene detection and characterization
    • Rouchka EC, Cha IE 2009. Current trends in pseudogene detection and characterization. Curr Bioinform 4: 112-119.
    • (2009) Curr Bioinform , vol.4 , pp. 112-119
    • Rouchka, E.C.1    Cha, I.E.2
  • 37
    • 44849127601 scopus 로고    scopus 로고
    • Genomics: Protein fossils live on as RNA
    • Sasidharan R, Gerstein M 2008. Genomics: protein fossils live on as RNA. Nature 453: 729-731.
    • (2008) Nature , vol.453 , pp. 729-731
    • Sasidharan, R.1    Gerstein, M.2
  • 39
    • 64449087641 scopus 로고    scopus 로고
    • Classification, evolution and species groups within the Triatominae
    • Schofield CJ, Galvão C 2009. Classification, evolution and species groups within the Triatominae. Acta Trop 110: 88-100.
    • (2009) Acta Trop , vol.110 , pp. 88-100
    • Schofield, C.J.1    Galvão, C.2
  • 42
    • 37249027666 scopus 로고    scopus 로고
    • Measuring rDNA diversity in eukaryotic microbial systems: How intragenomic variation, pseudogenes and PCR artifacts confound biodiversity estimates
    • Thornill DJ, Lajeunesse T, Santos SR 2007. Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes and PCR artifacts confound biodiversity estimates. Mol Ecol 16: 5326-5340.
    • (2007) Mol Ecol , vol.16 , pp. 5326-5340
    • Thornill, D.J.1    Lajeunesse, T.2    Santos, S.R.3
  • 43
    • 0028337036 scopus 로고
    • Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA
    • van Nues RW, Rientjes JM, van der Sande CAFM, Zerp SF, Sluiter C, Venema J, Planta RJ, Raue HA 1994. Separate structural elements within internal transcribed spacer 1 of Saccharomyces cerevisiae precursor ribosomal RNA direct the formation of 17S and 26S rRNA. Nucleic Acids Res 22: 912-919.
    • (1994) Nucleic Acids Res , vol.22 , pp. 912-919
    • Van Nues, R.W.1    Rientjes, J.M.2    Van Der Sande, C.3    Zerp, S.F.4    Sluiter, C.5    Venema, J.6    Planta, R.J.7    Raue, H.A.8
  • 44
    • 0033367325 scopus 로고    scopus 로고
    • Ribosome synthesis in Saccharomyces cerevisiae
    • Venema J, Tollervey D 1999. Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33: 261-311.
    • (1999) Annu Rev Genet , vol.33 , pp. 261-311
    • Venema, J.1    Tollervey, D.2
  • 46
    • 76849085808 scopus 로고    scopus 로고
    • High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: Incomplete concerted evolution and the origin of pseudogenes
    • Xiao LQ, Möller M, Zhu H 2010. High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: incomplete concerted evolution and the origin of pseudogenes. Mol Phylogenet Evol 55: 168-177.
    • (2010) Mol Phylogenet Evol , vol.55 , pp. 168-177
    • Xiao, L.Q.1    Möller, M.2    Zhu, H.3
  • 47
    • 65549163583 scopus 로고    scopus 로고
    • Intragenomic variability and pseudogenes of ribosomal DNA in stone flounder Kareius bicoloratus
    • Xu J, Zhang Q, Xu X, Wanga Z, Qi J 2009. Intragenomic variability and pseudogenes of ribosomal DNA in stone flounder Kareius bicoloratus. Mol Phylogenet Evol 52: 157-166.
    • (2009) Mol Phylogenet Evol , vol.52 , pp. 157-166
    • Xu, J.1    Zhang, Q.2    Xu, X.3    Wanga, Z.4    Qi, J.5
  • 48
    • 1642473033 scopus 로고    scopus 로고
    • Comparative analysis of processed pseudogenes in the mouse and human genomes
    • Zhang Z, Carriero N, Gerstein M 2004. Comparative analysis of processed pseudogenes in the mouse and human genomes. Trends Genet 20: 62-67.
    • (2004) Trends Genet , vol.20 , pp. 62-67
    • Zhang, Z.1    Carriero, N.2    Gerstein, M.3
  • 49
    • 0141652962 scopus 로고    scopus 로고
    • The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
    • Zhang Z, Gerstein M 2003. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene 312: 61-72.
    • (2003) Gene , vol.312 , pp. 61-72
    • Zhang, Z.1    Gerstein, M.2
  • 50
    • 38349110922 scopus 로고    scopus 로고
    • Analysis of nuclear receptor pseudogenes in vertebrates: How the silent tell their stories
    • Zhang ZD, Cayting P, Weinstock G, Gerstein M 2008. Analysis of nuclear receptor pseudogenes in vertebrates: how the silent tell their stories. Mol Biol Evol 25: 131-143.
    • (2008) Mol Biol Evol , vol.25 , pp. 131-143
    • Zhang, Z.D.1    Cayting, P.2    Weinstock, G.3    Gerstein, M.4
  • 51
    • 34247224735 scopus 로고    scopus 로고
    • The ambiguous boundary between genes and pseudogenes: The dead rise up or do they?
    • Zheng D, Gerstein MB 2007. The ambiguous boundary between genes and pseudogenes: the dead rise up or do they? Trends Genet 23: 219-224.
    • (2007) Trends Genet , vol.23 , pp. 219-224
    • Zheng, D.1    Gerstein, M.B.2
  • 52
    • 18144417788 scopus 로고    scopus 로고
    • Integrated pseudogene annotation for human chromosome 22: Evidence for transcription
    • Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M 2005. Integrated pseudogene annotation for human chromosome 22: evidence for transcription. J Mol Biol 349: 27-45.
    • (2005) J Mol Biol , vol.349 , pp. 27-45
    • Zheng, D.1    Zhang, Z.2    Harrison, P.M.3    Karro, J.4    Carriero, N.5    Gerstein, M.6
  • 53
    • 50249167645 scopus 로고    scopus 로고
    • Non-concerted ITS evolution, early origin and phylogenetic utility of ITS pseudogenes in Pyrus
    • Zheng X, Cai D, Yao L, Teng Y 2008. Non-concerted ITS evolution, early origin and phylogenetic utility of ITS pseudogenes in Pyrus. Mol Phylogenet Evol 48: 892-903.
    • (2008) Mol Phylogenet Evol , vol.48 , pp. 892-903
    • Zheng, X.1    Cai, D.2    Yao, L.3    Teng, Y.4
  • 54
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker M 1989. On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1
  • 55
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker M, Stiegler P 1981. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res 9: 133-148.
    • (1981) Nucleic Acids Res , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.