Transcriptome-wide ribonuclease-mediated protein footprinting to identify RNA-protein interaction sites

Methods

Volumn 72, Issue C, 2015, Pages 76-85

  Silverman, Ian M ^a   Gregory, Brian D ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Genomics; Post transcriptional regulation; RBPome; Ribonuclease footprinting; RNA binding proteins; RNA protein interactions

Indexed keywords

LONG UNTRANSLATED RNA; RIBONUCLEASE; RNA BINDING PROTEIN; TRANSCRIPTOME; RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; BINDING SITE; CONTROLLED STUDY; DEVELOPMENTAL DISORDER; DNA FLANKING REGION; EMBRYO; GENE CONTROL; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN CELL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CROSS LINKING; PROTEIN DEGRADATION; PROTEIN DENATURATION; PROTEIN FOOTPRINTING; PROTEIN INTERACTION; PROTEIN INTERACTION PROFILE SEQUENCING; PROTEIN PHOSPHORYLATION; PROTEIN PROTECTED SITE; PROTEIN RNA BINDING; PROTEIN STRUCTURE; QUALITY CONTROL; REPRODUCIBILITY; RNA PROCESSING; SEQUENCE ANALYSIS; CHEMISTRY; GENETICS; HEK293 CELL LINE; PROCEDURES;

BINDING SITES; HEK293 CELLS; HUMANS; PROTEIN FOOTPRINTING; RIBONUCLEASES; RNA; RNA-BINDING PROTEINS; SEQUENCE ANALYSIS, RNA; TRANSCRIPTOME;

EID: 84927761104     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2014.10.021     Document Type: Article

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