-
1
-
-
80051793810
-
Transcriptional regulation of MSX1 natural antisense transcript
-
Babajko, S., Meary, F., Petit, S., Fernandes, I., and Berdal, A. (2011). Transcriptional regulation of MSX1 natural antisense transcript. Cells Tissues Organs (Print). 194, 151-155. doi: 10.1159/000324466
-
(2011)
Cells Tissues Organs (Print)
, vol.194
, pp. 151-155
-
-
Babajko, S.1
Meary, F.2
Petit, S.3
Fernandes, I.4
Berdal, A.5
-
2
-
-
33646482114
-
Reduced ubiquitin C-terminal hydrolase-1 expression levels in dementia with Lewy bodies
-
Barrachina, M., Castano, E., Dalfo, E., Maes, T., Buesa, C., and Ferrer, I. (2006). Reduced ubiquitin C-terminal hydrolase-1 expression levels in dementia with Lewy bodies. Neurobiol. Dis. 22, 265-273. doi: 10.1016/j.nbd.2005.11.005
-
(2006)
Neurobiol. Dis
, vol.22
, pp. 265-273
-
-
Barrachina, M.1
Castano, E.2
Dalfo, E.3
Maes, T.4
Buesa, C.5
Ferrer, I.6
-
3
-
-
70349337904
-
Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells
-
Biagioli, M., Pinto, M., Cesselli, D., Zaninello, M., Lazarevic, D., Roncaglia, P., et al. (2009). Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells. Proc. Natl. Acad. Sci. U.S.A. 106, 15454-15459. doi: 10.1073/pnas.0813216106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 15454-15459
-
-
Biagioli, M.1
Pinto, M.2
Cesselli, D.3
Zaninello, M.4
Lazarevic, D.5
Roncaglia, P.6
-
4
-
-
84874456127
-
Recessive loss of function of the neuronal ubiquitin hydrolase UCHL1 leads to early-onset progressive neurodegeneration
-
Bilguvar, K., Tyagi, N. K., Ozkara, C., Tuysuz, B., Bakircioglu, M., Choi, M., et al. (2013). Recessive loss of function of the neuronal ubiquitin hydrolase UCHL1 leads to early-onset progressive neurodegeneration. Proc. Natl. Acad. Sci. U.S.A. 110, 3489-3494. doi: 10.1073/pnas.1222732110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 3489-3494
-
-
Bilguvar, K.1
Tyagi, N.K.2
Ozkara, C.3
Tuysuz, B.4
Bakircioglu, M.5
Choi, M.6
-
5
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M. C., Maeda, N., et al. (2005). The transcriptional landscape of the mammalian genome. Science 309, 1559-1563. doi: 10.1126/science.1112014
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
-
6
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
Carninci, P., Sandelin, A., Lenhard, B., Katayama, S., Shimokawa, K., Ponjavic, J., et al. (2006). Genome-wide analysis of mammalian promoter architecture and evolution. Nat. Genet. 38, 626-635. doi: 10.1038/ng1789
-
(2006)
Nat. Genet
, vol.38
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
Katayama, S.4
Shimokawa, K.5
Ponjavic, J.6
-
7
-
-
84869088820
-
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat
-
Carrieri, C., Cimatti, L., Biagioli, M., Beugnet, A., Zucchelli, S., Fedele, S., et al. (2012). Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature 491, 454-457. doi: 10.1038/nature11508
-
(2012)
Nature
, vol.491
, pp. 454-457
-
-
Carrieri, C.1
Cimatti, L.2
Biagioli, M.3
Beugnet, A.4
Zucchelli, S.5
Fedele, S.6
-
8
-
-
0035900751
-
Induction of cell cycle arrest and morphological differentiation by Nurr1 and retinoids in dopamine MN9D cells
-
Castro, D. S., Hermanson, E., Joseph, B., Wallen, A., Aarnisalo, P., Heller, A., et al. (2001). Induction of cell cycle arrest and morphological differentiation by Nurr1 and retinoids in dopamine MN9D cells. J. Biol. Chem. 276, 43277-43284. doi: 10.1074/jbc.M107013200
-
(2001)
J. Biol. Chem
, vol.276
, pp. 43277-43284
-
-
Castro, D.S.1
Hermanson, E.2
Joseph, B.3
Wallen, A.4
Aarnisalo, P.5
Heller, A.6
-
9
-
-
4444376317
-
Over 20% of human transcripts might form sense-antisense pairs
-
Chen, J., Sun, M., Kent, W. J., Huang, X., Xie, H., Wang, W., et al. (2004). Over 20% of human transcripts might form sense-antisense pairs. Nucleic Acids Res. 32, 4812-4820. doi: 10.1093/nar/gkh818
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 4812-4820
-
-
Chen, J.1
Sun, M.2
Kent, W.J.3
Huang, X.4
Xie, H.5
Wang, W.6
-
10
-
-
1842581669
-
Oxidative modifications and down-regulation of ubiquitin carboxyl-terminal hydrolase L1 associated with idiopathic Parkinson's and Alzheimer's diseases
-
Choi, J., Levey, A. I., Weintraub, S. T., Rees, H. D., Gearing, M., Chin, L. S., et al. (2004). Oxidative modifications and down-regulation of ubiquitin carboxyl-terminal hydrolase L1 associated with idiopathic Parkinson's and Alzheimer's diseases. J. Biol. Chem. 279, 13256-13264. doi: 10.1074/jbc.M314124200
-
(2004)
J. Biol. Chem
, vol.279
, pp. 13256-13264
-
-
Choi, J.1
Levey, A.I.2
Weintraub, S.T.3
Rees, H.D.4
Gearing, M.5
Chin, L.S.6
-
11
-
-
0037179121
-
Age-related decreases in Nurr1 immunoreactivity in the human substantia nigra
-
Chu, Y., Kompoliti, K., Cochran, E. J., Mufson, E. J., and Kordower, J. H. (2002). Age-related decreases in Nurr1 immunoreactivity in the human substantia nigra. J. Comp. Neurol. 450, 203-214. doi: 10.1002/cne.10261
-
(2002)
J. Comp. Neurol
, vol.450
, pp. 203-214
-
-
Chu, Y.1
Kompoliti, K.2
Cochran, E.J.3
Mufson, E.J.4
Kordower, J.H.5
-
12
-
-
80051695536
-
A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression
-
Chung, D. W., Rudnicki, D. D., Yu, L., and Margolis, R. L. (2011). A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression. Hum. Mol. Genet. 20, 3467-3477. doi: 10.1093/hmg/ddr263
-
(2011)
Hum. Mol. Genet
, vol.20
, pp. 3467-3477
-
-
Chung, D.W.1
Rudnicki, D.D.2
Yu, L.3
Margolis, R.L.4
-
13
-
-
84857862504
-
Epigenetic regulation of human cis-natural antisense transcripts
-
Conley, A. B., and Jordan, I. K. (2012). Epigenetic regulation of human cis-natural antisense transcripts. Nucleic Acids Res. 40, 1438-1445. doi: 10.1093/nar/gkr1010
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 1438-1445
-
-
Conley, A.B.1
Jordan, I.K.2
-
14
-
-
38549133553
-
Human cis natural antisense transcripts initiated by transposable elements
-
Conley, A. B., Miller, W. J., and Jordan, I. K. (2008). Human cis natural antisense transcripts initiated by transposable elements. Trends Genet. 24, 53-56. doi: 10.1016/j.tig.2007.11.008
-
(2008)
Trends Genet
, vol.24
, pp. 53-56
-
-
Conley, A.B.1
Miller, W.J.2
Jordan, I.K.3
-
15
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T., Johnson, R., Bussotti, G., Tanzer, A., Djebali, S., Tilgner, H., et al. (2012). The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 22, 1775-1789. doi: 10.1101/gr.132159.111
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
-
16
-
-
33646473694
-
Complex Loci in human and mouse genomes
-
Engstrom, P. G., Suzuki, H., Ninomiya, N., Akalin, A., Sessa, L., Lavorgna, G., et al. (2006). Complex Loci in human and mouse genomes. PLoS Genet. 2:e47. doi: 10.1371/journal.pgen.0020047
-
(2006)
PLoS Genet
, vol.2
-
-
Engstrom, P.G.1
Suzuki, H.2
Ninomiya, N.3
Akalin, A.4
Sessa, L.5
Lavorgna, G.6
-
17
-
-
46749083733
-
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase
-
Faghihi, M. A., Modarresi, F., Khalil, A. M., Wood, D. E., Sahagan, B. G., Morgan, T. E., et al. (2008). Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase. Nat. Med. 14, 723-730. doi: 10.1038/nm1784
-
(2008)
Nat. Med
, vol.14
, pp. 723-730
-
-
Faghihi, M.A.1
Modarresi, F.2
Khalil, A.M.3
Wood, D.E.4
Sahagan, B.G.5
Morgan, T.E.6
-
18
-
-
77952698932
-
Evidence for natural antisense transcript-mediated inhibition of microRNA function
-
Faghihi, M. A., Zhang, M., Huang, J., Modarresi, F., Van Der Brug, M. P., Nalls, M. A., et al. (2010). Evidence for natural antisense transcript-mediated inhibition of microRNA function. Genome Biol. 11:R56. doi: 10.1186/gb-2010-11-5-r56
-
(2010)
Genome Biol
, vol.11
, pp. 56
-
-
Faghihi, M.A.1
Zhang, M.2
Huang, J.3
Modarresi, F.4
Van Der Brug, M.P.5
Nalls, M.A.6
-
19
-
-
67349173665
-
The regulated retrotransposon transcriptome of mammalian cells
-
Faulkner, G. J., Kimura, Y., Daub, C. O., Wani, S., Plessy, C., Irvine, K. M., et al. (2009). The regulated retrotransposon transcriptome of mammalian cells. Nat. Genet. 41, 563-571. doi: 10.1038/ng.368
-
(2009)
Nat. Genet
, vol.41
, pp. 563-571
-
-
Faulkner, G.J.1
Kimura, Y.2
Daub, C.O.3
Wani, S.4
Plessy, C.5
Irvine, K.M.6
-
20
-
-
84897406127
-
A promoter-level mammalian expression atlas
-
Forrest, A. R., Kawaji, H., Rehli, M., Baillie, J. K., De Hoon, M. J., Haberle, V., et al. (2014). A promoter-level mammalian expression atlas. Nature 507, 462-470. doi: 10.1038/nature13182
-
(2014)
Nature
, vol.507
, pp. 462-470
-
-
Forrest, A.R.1
Kawaji, H.2
Rehli, M.3
Baillie, J.K.4
De Hoon, M.J.5
Haberle, V.6
-
21
-
-
84901651635
-
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
-
Fort, A., Hashimoto, K., Yamada, D., Salimullah, M., Keya, C. A., Saxena, A., et al. (2014). Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Nat. Genet. 46, 558-566. doi: 10.1038/ng.2965
-
(2014)
Nat. Genet
, vol.46
, pp. 558-566
-
-
Fort, A.1
Hashimoto, K.2
Yamada, D.3
Salimullah, M.4
Keya, C.A.5
Saxena, A.6
-
22
-
-
65549105080
-
Differences between subacute and chronic MPTP mice models: Investigation of dopaminergic neuronal degeneration and alpha-synuclein inclusions
-
Gibrat, C., Saint-Pierre, M., Bousquet, M., Levesque, D., Rouillard, C., and Cicchetti, F. (2009). Differences between subacute and chronic MPTP mice models: investigation of dopaminergic neuronal degeneration and alpha-synuclein inclusions. J. Neurochem. 109, 1469-1482. doi: 10.1111/j.1471-4159.2009.06072.x
-
(2009)
J. Neurochem
, vol.109
, pp. 1469-1482
-
-
Gibrat, C.1
Saint-Pierre, M.2
Bousquet, M.3
Levesque, D.4
Rouillard, C.5
Cicchetti, F.6
-
23
-
-
33747199933
-
Ubiquitin hydrolase Uch-L1 rescues beta-amyloid-induced decreases in synaptic function and contextual memory
-
Gong, B., Cao, Z., Zheng, P., Vitolo, O. V., Liu, S., Staniszewski, A., et al. (2006). Ubiquitin hydrolase Uch-L1 rescues beta-amyloid-induced decreases in synaptic function and contextual memory. Cell 126, 775-788. doi: 10.1016/j.cell.2006.06.046
-
(2006)
Cell
, vol.126
, pp. 775-788
-
-
Gong, B.1
Cao, Z.2
Zheng, P.3
Vitolo, O.V.4
Liu, S.5
Staniszewski, A.6
-
24
-
-
33746916754
-
Translated mutation in the Nurr1 gene as a cause for Parkinson's disease
-
Grimes, D. A., Han, F., Panisset, M., Racacho, L., Xiao, F., Zou, R., et al. (2006). Translated mutation in the Nurr1 gene as a cause for Parkinson's disease. Mov. Disord. 21, 906-909. doi: 10.1002/mds.20820
-
(2006)
Mov. Disord
, vol.21
, pp. 906-909
-
-
Grimes, D.A.1
Han, F.2
Panisset, M.3
Racacho, L.4
Xiao, F.5
Zou, R.6
-
25
-
-
33745737494
-
Myc-binding-site recognition in the human genome is determined by chromatin context
-
Guccione, E., Martinato, F., Finocchiaro, G., Luzi, L., Tizzoni, L., Dall' Olio, V., et al. (2006). Myc-binding-site recognition in the human genome is determined by chromatin context. Nat. Cell Biol. 8, 764-770. doi: 10.1038/ncb1434
-
(2006)
Nat. Cell Biol
, vol.8
, pp. 764-770
-
-
Guccione, E.1
Martinato, F.2
Finocchiaro, G.3
Luzi, L.4
Tizzoni, L.5
Dall' Olio, V.6
-
26
-
-
0038011489
-
Analysis of the mouse transcriptome for genes involved in the function of the nervous system
-
Gustincich, S., Batalov, S., Beisel, K. W., Bono, H., Carninci, P., Fletcher, C. F., et al. (2003). Analysis of the mouse transcriptome for genes involved in the function of the nervous system. Genome Res. 13, 1395-1401. doi: 10.1101/gr.1135303
-
(2003)
Genome Res
, vol.13
, pp. 1395-1401
-
-
Gustincich, S.1
Batalov, S.2
Beisel, K.W.3
Bono, H.4
Carninci, P.5
Fletcher, C.F.6
-
27
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman, M., Amit, I., Garber, M., French, C., Lin, M. F., Feldser, D., et al. (2009). Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458, 223-227. doi: 10.1038/nature07672
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
-
28
-
-
0043065330
-
Nurr1 regulates dopamine synthesis and storage in MN9D dopamine cells
-
Hermanson, E., Joseph, B., Castro, D., Lindqvist, E., Aarnisalo, P., Wallen, A., et al. (2003). Nurr1 regulates dopamine synthesis and storage in MN9D dopamine cells. Exp. Cell Res. 288, 324-334. doi: 10.1016/S0014-4827(03)00216-7
-
(2003)
Exp. Cell Res
, vol.288
, pp. 324-334
-
-
Hermanson, E.1
Joseph, B.2
Castro, D.3
Lindqvist, E.4
Aarnisalo, P.5
Wallen, A.6
-
29
-
-
34347259269
-
Protocol for the MPTP mouse model of Parkinson's disease
-
Jackson-Lewis, V., and Przedborski, S. (2007). Protocol for the MPTP mouse model of Parkinson's disease. Nat. Protoc. 2, 141-151. doi: 10.1038/nprot.2006.342
-
(2007)
Nat. Protoc
, vol.2
, pp. 141-151
-
-
Jackson-Lewis, V.1
Przedborski, S.2
-
30
-
-
84873423314
-
Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons
-
Kadkhodaei, B., Alvarsson, A., Schintu, N., Ramskold, D., Volakakis, N., Joodmardi, E., et al. (2013). Transcription factor Nurr1 maintains fiber integrity and nuclear-encoded mitochondrial gene expression in dopamine neurons. Proc. Natl. Acad. Sci. U.S.A. 110, 2360-2365. doi: 10.1073/pnas.1221077110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 2360-2365
-
-
Kadkhodaei, B.1
Alvarsson, A.2
Schintu, N.3
Ramskold, D.4
Volakakis, N.5
Joodmardi, E.6
-
31
-
-
72449191782
-
Nurr1 is required for maintenance of maturing and adult midbrain dopamine neurons
-
Kadkhodaei, B., Ito, T., Joodmardi, E., Mattsson, B., Rouillard, C., Carta, M., et al. (2009). Nurr1 is required for maintenance of maturing and adult midbrain dopamine neurons. J. Neurosci. 29, 15923-15932. doi: 10.1523/JNEUROSCI.3910-09.2009
-
(2009)
J. Neurosci
, vol.29
, pp. 15923-15932
-
-
Kadkhodaei, B.1
Ito, T.2
Joodmardi, E.3
Mattsson, B.4
Rouillard, C.5
Carta, M.6
-
32
-
-
79959916374
-
Unamplified cap analysis of gene expression on a single-molecule sequencer
-
Kanamori-Katayama, M., Itoh, M., Kawaji, H., Lassmann, T., Katayama, S., Kojima, M., et al. (2011). Unamplified cap analysis of gene expression on a single-molecule sequencer. Genome Res. 21, 1150-1159. doi: 10.1101/gr.115469.110
-
(2011)
Genome Res
, vol.21
, pp. 1150-1159
-
-
Kanamori-Katayama, M.1
Itoh, M.2
Kawaji, H.3
Lassmann, T.4
Katayama, S.5
Kojima, M.6
-
33
-
-
77955140071
-
New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism
-
Kapranov, P., Ozsolak, F., Kim, S. W., Foissac, S., Lipson, D., Hart, C., et al. (2010). New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism. Nature 466, 642-646. doi: 10.1038/nature09190
-
(2010)
Nature
, vol.466
, pp. 642-646
-
-
Kapranov, P.1
Ozsolak, F.2
Kim, S.W.3
Foissac, S.4
Lipson, D.5
Hart, C.6
-
34
-
-
84876864345
-
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
-
Kapusta, A., Kronenberg, Z., Lynch, V. J., Zhuo, X., Ramsay, L., Bourque, G., et al. (2013). Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PLoS Genet. 9:e1003470. doi: 10.1371/journal.pgen.1003470
-
(2013)
PLoS Genet
, vol.9
-
-
Kapusta, A.1
Kronenberg, Z.2
Lynch, V.J.3
Zhuo, X.4
Ramsay, L.5
Bourque, G.6
-
35
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M., et al. (2005). Antisense transcription in the mammalian transcriptome. Science 309, 1564-1566. doi: 10.1126/science.1112009
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
-
36
-
-
0028505429
-
TRANSFAC retrieval program: A network model database of eukaryotic transcription regulating sequences and proteins
-
Knuppel, R., Dietze, P., Lehnberg, W., Frech, K., and Wingender, E. (1994). TRANSFAC retrieval program: a network model database of eukaryotic transcription regulating sequences and proteins. J. Comput. Biol. 1, 191-198. doi: 10.1089/cmb.1994.1.191
-
(1994)
J. Comput. Biol
, vol.1
, pp. 191-198
-
-
Knuppel, R.1
Dietze, P.2
Lehnberg, W.3
Frech, K.4
Wingender, E.5
-
37
-
-
0032692692
-
Reduced Nurr1 expression increases the vulnerability of mesencephalic dopamine neurons to MPTP-induced injury
-
Le, W., Conneely, O. M., He, Y., Jankovic, J., and Appel, S. H. (1999). Reduced Nurr1 expression increases the vulnerability of mesencephalic dopamine neurons to MPTP-induced injury. J. Neurochem. 73, 2218-2221.
-
(1999)
J. Neurochem
, vol.73
, pp. 2218-2221
-
-
Le, W.1
Conneely, O.M.2
He, Y.3
Jankovic, J.4
Appel, S.H.5
-
38
-
-
79951837277
-
Spatiotemporal regulation of multiple overlapping sense and novel natural antisense transcripts at the Nrgn and Camk2n1 gene loci during mouse cerebral corticogenesis
-
Ling, K. H., Hewitt, C. A., Beissbarth, T., Hyde, L., Cheah, P. S., Smyth, G. K., et al. (2011). Spatiotemporal regulation of multiple overlapping sense and novel natural antisense transcripts at the Nrgn and Camk2n1 gene loci during mouse cerebral corticogenesis. Cereb. Cortex 21, 683-697. doi: 10.1093/cercor/bhq141
-
(2011)
Cereb. Cortex
, vol.21
, pp. 683-697
-
-
Ling, K.H.1
Hewitt, C.A.2
Beissbarth, T.3
Hyde, L.4
Cheah, P.S.5
Smyth, G.K.6
-
39
-
-
84900791270
-
Developmental changes in the transcriptome of human cerebral cortex tissue: Long noncoding RNA transcripts
-
Lipovich, L., Tarca, A. L., Cai, J., Jia, H., Chugani, H. T., Sterner, K. N., et al. (2013). Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. Cereb. Cortex 24, 1451-1459. doi: 10.1093/cercor/bhs414
-
(2013)
Cereb. Cortex
, vol.24
, pp. 1451-1459
-
-
Lipovich, L.1
Tarca, A.L.2
Cai, J.3
Jia, H.4
Chugani, H.T.5
Sterner, K.N.6
-
40
-
-
84862796990
-
Decreased NURR1 and PITX3 gene expression in Chinese patients with Parkinson's disease
-
Liu, H., Wei, L., Tao, Q., Deng, H., Ming, M., Xu, P., et al. (2012). Decreased NURR1 and PITX3 gene expression in Chinese patients with Parkinson's disease. Eur. J. Neurol. 19, 870-875. doi: 10.1111/j.1468-1331.2011.03644.x
-
(2012)
Eur. J. Neurol
, vol.19
, pp. 870-875
-
-
Liu, H.1
Wei, L.2
Tao, Q.3
Deng, H.4
Ming, M.5
Xu, P.6
-
41
-
-
0037131567
-
The UCH-L1 gene encodes two opposing enzymatic activities that affect alpha-synuclein degradation and Parkinson's disease susceptibility
-
Liu, Y., Fallon, L., Lashuel, H. A., Liu, Z., and Lansbury, P. T. Jr. (2002). The UCH-L1 gene encodes two opposing enzymatic activities that affect alpha-synuclein degradation and Parkinson's disease susceptibility. Cell 111, 209-218. doi: 10.1016/S0092-8674(02)01012-7
-
(2002)
Cell
, vol.111
, pp. 209-218
-
-
Liu, Y.1
Fallon, L.2
Lashuel, H.A.3
Liu, Z.4
Lansbury, P.T.5
-
42
-
-
63849154465
-
Membrane-associated farnesylated UCH-L1 promotes alpha-synuclein neurotoxicity and is a therapeutic target for Parkinson's disease
-
Liu, Z., Meray, R. K., Grammatopoulos, T. N., Fredenburg, R. A., Cookson, M. R., Liu, Y., et al. (2009). Membrane-associated farnesylated UCH-L1 promotes alpha-synuclein neurotoxicity and is a therapeutic target for Parkinson's disease. Proc. Natl. Acad. Sci. U.S.A. 106, 4635-4640. doi: 10.1073/pnas.0806474106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 4635-4640
-
-
Liu, Z.1
Meray, R.K.2
Grammatopoulos, T.N.3
Fredenburg, R.A.4
Cookson, M.R.5
Liu, Y.6
-
43
-
-
4444368405
-
Dysregulation of gene expression in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned mouse substantia nigra
-
Miller, R. M., Callahan, L. M., Casaceli, C., Chen, L., Kiser, G. L., Chui, B., et al. (2004). Dysregulation of gene expression in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned mouse substantia nigra. J. Neurosci. 24, 7445-7454. doi: 10.1523/JNEUROSCI.4204-03.2004
-
(2004)
J. Neurosci
, vol.24
, pp. 7445-7454
-
-
Miller, R.M.1
Callahan, L.M.2
Casaceli, C.3
Chen, L.4
Kiser, G.L.5
Chui, B.6
-
44
-
-
84875851114
-
Regional differences in gene expression and promoter usage in aged human brains
-
Pardo, L. M., Rizzu, P., Francescatto, M., Vitezic, M., Leday, G. G., Sanchez, J. S., et al. (2013). Regional differences in gene expression and promoter usage in aged human brains. Neurobiol. Aging 34, 1825-1836. doi: 10.1016/j.neurobiolaging.2013.01.005
-
(2013)
Neurobiol. Aging
, vol.34
, pp. 1825-1836
-
-
Pardo, L.M.1
Rizzu, P.2
Francescatto, M.3
Vitezic, M.4
Leday, G.G.5
Sanchez, J.S.6
-
45
-
-
67649361892
-
Autoregulatory loop of Msx1 expression involving its antisense transcripts
-
Petit, S., Meary, F., Pibouin, L., Jeanny, J. C., Fernandes, I., Poliard, A., et al. (2009). Autoregulatory loop of Msx1 expression involving its antisense transcripts. J. Cell. Physiol. 220, 303-310. doi: 10.1002/jcp.21762
-
(2009)
J. Cell. Physiol
, vol.220
, pp. 303-310
-
-
Petit, S.1
Meary, F.2
Pibouin, L.3
Jeanny, J.C.4
Fernandes, I.5
Poliard, A.6
-
46
-
-
84946013175
-
lncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs
-
Database issue
-
Quek, X. C., Thomson, D. W., Maag, J. L., Bartonicek, N., Signal, B., Clark, M. B., et al. (2015). lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res. 43(Database issue), D168-D173. doi: 10.1093/nar/gku988
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D168-D173
-
-
Quek, X.C.1
Thomson, D.W.2
Maag, J.L.3
Bartonicek, N.4
Signal, B.5
Clark, M.B.6
-
47
-
-
0032846416
-
Intragenic deletion in the gene encoding ubiquitin carboxy-terminal hydrolase in gad mice
-
Saigoh, K., Wang, Y. L., Suh, J. G., Yamanishi, T., Sakai, Y., Kiyosawa, H., et al. (1999). Intragenic deletion in the gene encoding ubiquitin carboxy-terminal hydrolase in gad mice. Nat. Genet. 23, 47-51. doi: 10.1038/12647
-
(1999)
Nat. Genet
, vol.23
, pp. 47-51
-
-
Saigoh, K.1
Wang, Y.L.2
Suh, J.G.3
Yamanishi, T.4
Sakai, Y.5
Kiyosawa, H.6
-
48
-
-
0032584085
-
Nurr1 is essential for the induction of the dopaminergic phenotype and the survival of ventral mesencephalic late dopaminergic precursor neurons
-
Saucedo-Cardenas, O., Quintana-Hau, J. D., Le, W. D., Smidt, M. P., Cox, J. J., De Mayo, F., et al. (1998). Nurr1 is essential for the induction of the dopaminergic phenotype and the survival of ventral mesencephalic late dopaminergic precursor neurons. Proc. Natl. Acad. Sci. U.S.A. 95, 4013-4018. doi: 10.1073/pnas.95.7.4013
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 4013-4018
-
-
Saucedo-Cardenas, O.1
Quintana-Hau, J.D.2
Le, W.D.3
Smidt, M.P.4
Cox, J.J.5
De Mayo, F.6
-
49
-
-
14344272346
-
Visualization, direct isolation, and transplantation of midbrain dopaminergic neurons
-
Sawamoto, K., Nakao, N., Kobayashi, K., Matsushita, N., Takahashi, H., Kakishita, K., et al. (2001). Visualization, direct isolation, and transplantation of midbrain dopaminergic neurons. Proc. Natl. Acad. Sci. U.S.A. 98, 6423-6428. doi: 10.1073/pnas.111152398
-
(2001)
Proc. Natl. Acad. Sci. U.S.A
, vol.98
, pp. 6423-6428
-
-
Sawamoto, K.1
Nakao, N.2
Kobayashi, K.3
Matsushita, N.4
Takahashi, H.5
Kakishita, K.6
-
50
-
-
33947620507
-
The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function
-
Scheele, C., Petrovic, N., Faghihi, M. A., Lassmann, T., Fredriksson, K., Rooyackers, O., et al. (2007). The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function. BMC Genomics 8:74. doi: 10.1186/1471-2164-8-74
-
(2007)
BMC Genomics
, vol.8
, pp. 74
-
-
Scheele, C.1
Petrovic, N.2
Faghihi, M.A.3
Lassmann, T.4
Fredriksson, K.5
Rooyackers, O.6
-
51
-
-
67649834440
-
ChIP-seq: Using high-throughput sequencing to discover protein-DNA interactions
-
Schmidt, D., Wilson, M. D., Spyrou, C., Brown, G. D., Hadfield, J., and Odom, D. T. (2009). ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48, 240-248. doi: 10.1016/j.ymeth.2009.03.001
-
(2009)
Methods
, vol.48
, pp. 240-248
-
-
Schmidt, D.1
Wilson, M.D.2
Spyrou, C.3
Brown, G.D.4
Hadfield, J.5
Odom, D.T.6
-
52
-
-
84897438848
-
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
-
Severin, J., Lizio, M., Harshbarger, J., Kawaji, H., Daub, C. O., Hayashizaki, Y., et al. (2014). Interactive visualization and analysis of large-scale sequencing datasets using ZENBU. Nat. Biotechnol. 32, 217-219. doi: 10.1038/nbt.2840
-
(2014)
Nat. Biotechnol
, vol.32
, pp. 217-219
-
-
Severin, J.1
Lizio, M.2
Harshbarger, J.3
Kawaji, H.4
Daub, C.O.5
Hayashizaki, Y.6
-
53
-
-
9144233601
-
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
-
Shiraki, T., Kondo, S., Katayama, S., Waki, K., Kasukawa, T., Kawaji, H., et al. (2003). Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc. Natl. Acad. Sci. U.S.A. 100, 15776-15781. doi: 10.1073/pnas.2136655100
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 15776-15781
-
-
Shiraki, T.1
Kondo, S.2
Katayama, S.3
Waki, K.4
Kasukawa, T.5
Kawaji, H.6
-
54
-
-
79959306523
-
CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA
-
Sopher, B. L., Ladd, P. D., Pineda, V. V., Libby, R. T., Sunkin, S. M., Hurley, J. B., et al. (2011). CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA. Neuron 70, 1071-1084. doi: 10.1016/j.neuron.2011.05.027
-
(2011)
Neuron
, vol.70
, pp. 1071-1084
-
-
Sopher, B.L.1
Ladd, P.D.2
Pineda, V.V.3
Libby, R.T.4
Sunkin, S.M.5
Hurley, J.B.6
-
55
-
-
77952514762
-
Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors
-
Spigoni, G., Gedressi, C., and Mallamaci, A. (2010). Regulation of Emx2 expression by antisense transcripts in murine cortico-cerebral precursors. PLoS ONE 5:e8658. doi: 10.1371/journal.pone.0008658
-
(2010)
PLoS ONE
, vol.5
-
-
Spigoni, G.1
Gedressi, C.2
Mallamaci, A.3
-
56
-
-
84879462680
-
Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer
-
Takayama, K., Horie-Inoue, K., Katayama, S., Suzuki, T., Tsutsumi, S., Ikeda, K., et al. (2013). Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer. EMBO J. 32, 1665-1680. doi: 10.1038/emboj.2013.99
-
(2013)
EMBO J
, vol.32
, pp. 1665-1680
-
-
Takayama, K.1
Horie-Inoue, K.2
Katayama, S.3
Suzuki, T.4
Tsutsumi, S.5
Ikeda, K.6
-
57
-
-
0030888286
-
In situ detection of apoptotic nuclei in the substantia nigra compacta of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-treated mice using terminal deoxynucleotidyl transferase labelling and acridine orange staining
-
Tatton, N. A., and Kish, S. J. (1997). In situ detection of apoptotic nuclei in the substantia nigra compacta of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-treated mice using terminal deoxynucleotidyl transferase labelling and acridine orange staining. Neuroscience 77, 1037-1048. doi: 10.1016/S0306-4522(96)00545-3
-
(1997)
Neuroscience
, vol.77
, pp. 1037-1048
-
-
Tatton, N.A.1
Kish, S.J.2
-
58
-
-
77956927823
-
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi, V., Ellis, J. D., Shen, Z., Song, D. Y., Pan, Q., Watt, A. T., et al. (2010). The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol. Cell 39, 925-938. doi: 10.1016/j.molcel.2010.08.011
-
(2010)
Mol. Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
-
59
-
-
79960065233
-
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
-
Van Dijk, E. L., Chen, C. L., D'aubenton-Carafa, Y., Gourvennec, S., Kwapisz, M., Roche, V., et al. (2011). XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. Nature 475, 114-117. doi: 10.1038/nature10118
-
(2011)
Nature
, vol.475
, pp. 114-117
-
-
Van Dijk, E.L.1
Chen, C.L.2
D'aubenton-Carafa, Y.3
Gourvennec, S.4
Kwapisz, M.5
Roche, V.6
-
60
-
-
84891798006
-
NONCODEv4: Exploring the world of long non-coding RNA genes
-
Xie, C., Yuan, J., Li, H., Li, M., Zhao, G., Bu, D., et al. (2014). NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res. 42, D98-D103. doi: 10.1093/nar/gkt1222
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D98-D103
-
-
Xie, C.1
Yuan, J.2
Li, H.3
Li, M.4
Zhao, G.5
Bu, D.6
-
61
-
-
0037177097
-
Association of homozygous 7048G7049 variant in the intron six of Nurr1 gene with Parkinson's disease
-
Xu, P. Y., Liang, R., Jankovic, J., Hunter, C., Zeng, Y. X., Ashizawa, T., et al. (2002). Association of homozygous 7048G7049 variant in the intron six of Nurr1 gene with Parkinson's disease. Neurology 58, 881-884. doi: 10.1212/WNL.58.6.881
-
(2002)
Neurology
, vol.58
, pp. 881-884
-
-
Xu, P.Y.1
Liang, R.2
Jankovic, J.3
Hunter, C.4
Zeng, Y.X.5
Ashizawa, T.6
-
62
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu, W., Gius, D., Onyango, P., Muldoon-Jacobs, K., Karp, J., Feinberg, A. P., et al. (2008). Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 451, 202-206. doi: 10.1038/nature06468
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
-
63
-
-
0031002024
-
Dopamine neuron agenesis in Nurr1-deficient mice
-
Zetterstrom, R. H., Solomin, L., Jansson, L., Hoffer, B. J., Olson, L., and Perlmann, T. (1997). Dopamine neuron agenesis in Nurr1-deficient mice. Science 276, 248-250. doi: 10.1126/science.276.5310.248
-
(1997)
Science
, vol.276
, pp. 248-250
-
-
Zetterstrom, R.H.1
Solomin, L.2
Jansson, L.3
Hoffer, B.J.4
Olson, L.5
Perlmann, T.6
|