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Volumn 3, Issue 9, 2009, Pages 1093-1104

Life without light: Microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave

Author keywords

Ammonia oxidizing bacteria; DNA stable isotope probing; Movile Cave; Sulfur oxidizing bacteria

Indexed keywords

AMMONIA MONOOXYGENASE; ARCHAEAL DNA; ARCHAEAL RNA; BACTERIAL DNA; BACTERIAL RNA; OXIDOREDUCTASE; QUATERNARY AMMONIUM DERIVATIVE; RIBOSOME DNA; RIBULOSEBISPHOSPHATE CARBOXYLASE; RNA 16S; SULFUR;

EID: 70349446265     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2009.57     Document Type: Article
Times cited : (166)

References (37)
  • 1
    • 34547320510 scopus 로고    scopus 로고
    • Cultivation of a novel cold-adapted nitrite oxidizing Betaproteobacterium from the Siberian Arctic
    • Alawi M, Lipski A, Sanders T, Pfeiffer EM, Spieck E. (2007). Cultivation of a novel cold-adapted nitrite oxidizing Betaproteobacterium from the Siberian Arctic. ISME J 1: 256-264.
    • (2007) ISME J , vol.1 , pp. 256-264
    • Alawi, M.1    Lipski, A.2    Sanders, T.3    Pfeiffer, E.M.4    Spieck, E.5
  • 2
    • 51649084234 scopus 로고    scopus 로고
    • Revealing the uncultured majority: Combining DNA stableisotope probing, multiple displacement amplification and metagenomics analyses of uncultivated Methylocystis in acidic peatlands
    • Chen Y, Dumont MG, Neufeld JD, Bodrossy L, Stralis- Pavese N, McNamara NP et al. (2008). Revealing the uncultured majority: combining DNA stableisotope probing, multiple displacement amplification and metagenomics analyses of uncultivated Methylocystis in acidic peatlands. Environ Microbiol 10: 2609-2622.
    • (2008) Environ Microbiol , vol.10 , pp. 2609-2622
    • Chen, Y.1    Dumont, M.G.2    Neufeld, J.D.3    Bodrossy, L.4    Stralis- Pavese, N.5    McNamara, N.P.6
  • 3
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • Delong EF. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci USA 89: 5685-5689.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 5
    • 10644225888 scopus 로고    scopus 로고
    • Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic 'Epsilonproteobacteria'
    • Engel AS, Porter ML, Stern LA, Quinlan S, Bennett PC. (2004). Bacterial diversity and ecosystem function of filamentous microbial mats from aphotic (cave) sulfidic springs dominated by chemolithoautotrophic 'Epsilonproteobacteria'. FEMS Microbiol Ecol 51: 31-53.
    • (2004) FEMS Microbiol Ecol , vol.51 , pp. 31-53
    • Engel, A.S.1    Porter, M.L.2    Stern, L.A.3    Quinlan, S.4    Bennett, P.C.5
  • 6
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammoniaoxidizing archaea in water columns and sediments of the ocean
    • Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. (2005). Ubiquity and diversity of ammoniaoxidizing archaea in water columns and sediments of the ocean. PNAS 102: 14683-14688.
    • (2005) PNAS , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 7
    • 0030464460 scopus 로고    scopus 로고
    • SeaView and Phylo-win, two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C. (1996). SeaView and Phylo-win, two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543-548.
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 8
    • 2942532191 scopus 로고    scopus 로고
    • Distribution of RuBisCO genotypes along a redox gradient in Mono Lake, California
    • Giri BJ, Bano N, Hollibaugh JT. (2004). Distribution of RuBisCO genotypes along a redox gradient in Mono Lake, California. Appl Environ Microbiol 70: 3443-3448.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3443-3448
    • Giri, B.J.1    Bano, N.2    Hollibaugh, J.T.3
  • 10
    • 2142857748 scopus 로고    scopus 로고
    • Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk
    • Inagaki F, Suzuki M, Takai K, Oida H, Sakamoto T, Aoki et al. (2003). Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk. Appl Environ Microbiol 69: 7224-7235.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7224-7235
    • Inagaki, F.1    Suzuki, M.2    Takai, K.3    Oida, H.4    Aoki, S.T.5
  • 11
    • 19544364908 scopus 로고    scopus 로고
    • Thiovirga sulfuroxydans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium isolated from a microaerobic waste-water biofilm
    • Ito T, Sugita K, Yumoto I, Nodasaka Y, Okabe S. (2005). Thiovirga sulfuroxydans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium isolated from a microaerobic waste-water biofilm. Int J Syst Evol Microbiol 55: 1059-1064.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1059-1064
    • Ito, T.1    Sugita, K.2    Yumoto, I.3    Nodasaka, Y.4    Okabe, S.5
  • 13
    • 9744249395 scopus 로고    scopus 로고
    • Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity
    • Kodama Y, Watanabe K. (2004). Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity. Int Syst Evol Microbiol 54: 2297-2300.
    • (2004) Int Syst Evol Microbiol , vol.54 , pp. 2297-2300
    • Kodama, Y.1    Watanabe, K.2
  • 14
    • 0842303733 scopus 로고    scopus 로고
    • Autotrophic ammonia oxidation in a deep-sea hydrothermal plume
    • Lam P, Cowen JP, Jones RD. (2004). Autotrophic ammonia oxidation in a deep-sea hydrothermal plume. FEMS Microbiol Ecol 47: 191-206.
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 191-206
    • Lam, P.1    Cowen, J.P.2    Jones, R.D.3
  • 15
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E and Goodfellow M (eds) John Wiley Sons: New York, USA
    • Lane DJ. (1991). 16S/23S rRNA sequencing. In: Stackebrandt E and Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics. John Wiley Sons: New York, USA, pp 115-147.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-147
    • Lane, D.J.1
  • 16
    • 34249039879 scopus 로고    scopus 로고
    • Effects of ammonium and nitrite on communities and populations of ammonia-oxidizing bacteria in laboratory- scale continuous-flow reactors
    • Limpiyakorn T, Kurisu F, Sakamoto Y, Yagi O. (2007). Effects of ammonium and nitrite on communities and populations of ammonia-oxidizing bacteria in laboratory- scale continuous-flow reactors. FEMS Microbiol Ecol 60: 501-512.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 501-512
    • Limpiyakorn, T.1    Kurisu, F.2    Sakamoto, Y.3    Yagi, O.4
  • 17
    • 53949086905 scopus 로고    scopus 로고
    • High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study
    • Lliros M, Casamayor EO, Borrego C. (2008). High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study. FEMS Microbiol Ecol 66: 331-342.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 331-342
    • Lliros, M.1    Casamayor, E.O.2    Borrego, C.3
  • 20
    • 34247233535 scopus 로고    scopus 로고
    • Extremely acidic, pendulous cave wall biofilms from the Frasassi cave system, Italy
    • Macalady JL, Jones DS, Lyon EH. (2007). Extremely acidic, pendulous cave wall biofilms from the Frasassi cave system, Italy. Environ Microbiol 9: 1402-1414.
    • (2007) Environ Microbiol , vol.9 , pp. 1402-1414
    • MacAlady, J.L.1    Jones, D.S.2    Lyon, E.H.3
  • 22
    • 35448951067 scopus 로고    scopus 로고
    • Molecular analysis of the distribution and phylogeny of the soxB gene among sulfur-oxidizing bacteria - Evolution of the Sox sulfur oxidation enzyme system
    • Meyer B, Imhoff JF, Kuever J. (2007). Molecular analysis of the distribution and phylogeny of the soxB gene among sulfur-oxidizing bacteria - evolution of the Sox sulfur oxidation enzyme system. Environ Microbiol 9: 2957-2977.
    • (2007) Environ Microbiol , vol.9 , pp. 2957-2977
    • Meyer, B.1    Imhoff, J.F.2    Kuever, J.3
  • 23
    • 54749128605 scopus 로고    scopus 로고
    • Thiofaba tepidiphila gen. nov., sp. nov., a novel obligate chemolithoautotrophic, sulfur-oxidizing bacterium of the Gammaproteobacteria isolated from a hot spring
    • Mori K, Suzuki K. (2008). Thiofaba tepidiphila gen. nov., sp. nov., a novel obligate chemolithoautotrophic, sulfur-oxidizing bacterium of the Gammaproteobacteria isolated from a hot spring. Int J Syst Evol Microbiol 58: 1885-1891.
    • (2008) Int J Syst Evol Microbiol , vol.58 , pp. 1885-1891
    • Mori, K.1    Suzuki, K.2
  • 24
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 25
    • 45149091572 scopus 로고    scopus 로고
    • Deep-sea vent chemoautotrophs: Diversity, biochemistry and ecological significance
    • Nakagawa S, Takai K. (2008). Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65: 1-14.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 1-14
    • Nakagawa, S.1    Takai, K.2
  • 26
    • 34948835698 scopus 로고    scopus 로고
    • Stable-isotope probing implicates Methylophaga spp. and novel Gammaproteobacteria in marine methanol and methylamine metabolism
    • Neufeld JD, Schafer H, Cox MJ, Boden R, McDonald IR, Murrell JC. (2007). Stable-isotope probing implicates Methylophaga spp. and novel Gammaproteobacteria in marine methanol and methylamine metabolism. ISME J 1: 480-491.
    • (2007) ISME J , vol.1 , pp. 480-491
    • Neufeld, J.D.1    Schafer, H.2    Cox, M.J.3    Boden, R.4    McDonald, I.R.5    Murrell, J.C.6
  • 27
    • 33749382349 scopus 로고    scopus 로고
    • Molecular analysis of ammoniaoxidizing bacteria community in intermittent aeration sequencing batch reactors used for animal wastewater treatment
    • Otawa K, Asano R, Ohba Y, Sasaki T, Kawamura E, Koyama F et al. (2006). Molecular analysis of ammoniaoxidizing bacteria community in intermittent aeration sequencing batch reactors used for animal wastewater treatment. Environ Microbiol 8: 1985-1996.
    • (2006) Environ Microbiol , vol.8 , pp. 1985-1996
    • Otawa, K.1    Asano, R.2    Ohba, Y.3    Sasaki, T.4    Kawamura, E.5    Koyama, F.6
  • 28
    • 0037278296 scopus 로고    scopus 로고
    • Preliminary evidence for a sulfur cycle in Movile Cave, Romania
    • Rohwerder T, Sand W, Lascu C. (2003). Preliminary evidence for a sulfur cycle in Movile Cave, Romania. Acta Biotechnol 23: 101-107.
    • (2003) Acta Biotechnol , vol.23 , pp. 101-107
    • Rohwerder, T.1    Sand, W.2    Lascu, C.3
  • 29
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia- oxidizing populations
    • Rotthauwe JH, Witzel KP, Liesack W. (1997). The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia- oxidizing populations. Appl Environ Microbiol 63: 4704-4712.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 30
    • 0028561259 scopus 로고
    • Microbiological characterization of a sulfur-rich groundwater ecosystem
    • Sarbu SM, Kinkle BK, Vlasceanu L, Kane TC. (1994). Microbiological characterization of a sulfur-rich groundwater ecosystem. Geomicrobiol J 12: 175-182.
    • (1994) Geomicrobiol J , vol.12 , pp. 175-182
    • Sarbu, S.M.1    Kinkle, B.K.2    Vlasceanu, L.3    Kane, T.C.4
  • 31
    • 0029529140 scopus 로고
    • A subterranean chemoautotrophically based ecosystem
    • Sarbu SM, Kane TC. (1995). A subterranean chemoautotrophically based ecosystem. NSS Bull 57: 91-98.
    • (1995) NSS Bull , vol.57 , pp. 91-98
    • Sarbu, S.M.1    Kane, T.C.2
  • 32
    • 0029661472 scopus 로고    scopus 로고
    • A chemoautotrophically based cave ecosystem
    • Sarbu SM, Kane TC, Kinkle BK. (1996). A chemoautotrophically based cave ecosystem. Science 272: 1953-1955.
    • (1996) Science , vol.272 , pp. 1953-1955
    • Sarbu, S.M.1    Kane, T.C.2    Kinkle, B.K.3
  • 33
    • 0003152694 scopus 로고    scopus 로고
    • Movile Cave: A chemoautotrophically based groundwater ecosystem
    • Wilkens H, Culver DC, Humphreys WF (eds). Elsevier: Amsterdam
    • Sarbu SM. (2000). Movile Cave: a chemoautotrophically based groundwater ecosystem. In: Wilkens H, Culver DC, Humphreys WF (eds). Subterranean Ecosystems. Elsevier: Amsterdam, pp 319-343.
    • (2000) Subterranean Ecosystems , pp. 319-343
    • Sarbu, S.M.1
  • 34
    • 12244285672 scopus 로고    scopus 로고
    • Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/oxygenase large-subunit genes (cbbL) in differently managed agricultural soils
    • Selesi D, Schmid M, Hartmann A. (2005). Diversity of green-like and red-like ribulose-1,5-bisphosphate carboxylase/ oxygenase large-subunit genes (cbbL) in differently managed agricultural soils. Appl Environ Microbiol 71: 175-184.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 175-184
    • Selesi, D.1    Schmid, M.2    Hartmann, A.3
  • 35
    • 0344035670 scopus 로고    scopus 로고
    • Genetic diversity of Archaea in deep-sea hydrothermal vent environments
    • Takai K, Horikoshi K. (1999). Genetic diversity of Archaea in deep-sea hydrothermal vent environments. Genetics 152: 1285-1297.
    • (1999) Genetics , vol.152 , pp. 1285-1297
    • Takai, K.1    Horikoshi, K.2
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0030872086 scopus 로고    scopus 로고
    • Characterization of Thiobacillus thioparus LV43 and its distribution in a chemoautotrophically based groundwater ecosystem
    • Vlasceanu L, Popa R, Kinkle BK. (1997). Characterization of Thiobacillus thioparus LV43 and its distribution in a chemoautotrophically based groundwater ecosystem. Appl Environ Microbiol 63: 3123-3127.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3123-3127
    • Vlasceanu, L.1    Popa, R.2    Kinkle, B.K.3


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