-
1
-
-
34047146611
-
Heavy metal resistance and genotypic analysis of metal resistance genes in gram-positive and gram-negative bacteria present in Ni-rich serpentine soil and in the rhizosphere of Alyssum murale
-
Abou-Shanab, R. A., Van Berkum, P., and Angle, J. S. (2007). Heavy metal resistance and genotypic analysis of metal resistance genes in gram-positive and gram-negative bacteria present in Ni-rich serpentine soil and in the rhizosphere of Alyssum murale. Chemosphere 68, 360-367. doi: 10.1016/j.chemosphere.2006.12.051.
-
(2007)
Chemosphere
, vol.68
, pp. 360-367
-
-
Abou-Shanab, R.A.1
Van Berkum, P.2
Angle, J.S.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., et al. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402. doi: 10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
-
3
-
-
84886297012
-
Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26
-
Andres, J., Arsene-Ploetze, F., Barbe, V., Brochier-Armanet, C., Cleiss-Arnold, J., Coppee, J. Y., et al. (2013). Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26. Genome Biol. Evol. 5, 934-953. doi: 10.1093/gbe/evt061.
-
(2013)
Genome Biol. Evol
, vol.5
, pp. 934-953
-
-
Andres, J.1
Arsene-Ploetze, F.2
Barbe, V.3
Brochier-Armanet, C.4
Cleiss-Arnold, J.5
Coppee, J.Y.6
-
4
-
-
7744220357
-
Characteristics of zinc transport by two bacterial cation diffusion facilitators from Ralstonia metallidurans CH34 and Escherichia coli
-
Anton, A., Weltrowski, A., Haney, C. J., Franke, S., Grass, G., Rensing, C., et al. (2004). Characteristics of zinc transport by two bacterial cation diffusion facilitators from Ralstonia metallidurans CH34 and Escherichia coli. J. Bacteriol. 186, 7499-7507. doi: 10.1128/JB.186.22.7499-7507.2004.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7499-7507
-
-
Anton, A.1
Weltrowski, A.2
Haney, C.J.3
Franke, S.4
Grass, G.5
Rensing, C.6
-
5
-
-
9144232912
-
UniProt: the Universal Protein knowledgebase
-
Apweiler, R., Bairoch, A., Wu, C. H., Barker, W. C., Boeckmann, B., Ferro, S., et al. (2004). UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32, D115-D119. doi: 10.1093/nar/gkh131.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. D115-D119
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
-
6
-
-
0031296919
-
Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid
-
Bartosik, D., Bialkowska, A., Baj, J., and Wlodarczyk, M. (1997). Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid. Acta Microbiol. Pol. 46, 387-392.
-
(1997)
Acta Microbiol. Pol
, vol.46
, pp. 387-392
-
-
Bartosik, D.1
Bialkowska, A.2
Baj, J.3
Wlodarczyk, M.4
-
7
-
-
0035688331
-
Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1
-
Bartosik, D., Szymanik, M., and Wysocka, E. (2001). Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1. J. Bacteriol. 183, 6234-6243. doi: 10.1128/JB.183.21.6234-6243.2001.
-
(2001)
J. Bacteriol
, vol.183
, pp. 6234-6243
-
-
Bartosik, D.1
Szymanik, M.2
Wysocka, E.3
-
8
-
-
84865779683
-
Regulation of the histidine utilization (hut) system in bacteria
-
Bender, R. A. (2012). Regulation of the histidine utilization (hut) system in bacteria. Microbiol. Mol. Biol. Rev. 76, 565-584. doi: 10.1128/MMBR.00014-12.
-
(2012)
Microbiol. Mol. Biol. Rev
, vol.76
, pp. 565-584
-
-
Bender, R.A.1
-
9
-
-
0018800089
-
A rapid alkaline extraction procedure for screening recombinant plasmid DNA
-
Birnboim, H. C., and Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7, 1513-1523. doi: 10.1093/nar/7.6.1513.
-
(1979)
Nucleic Acids Res
, vol.7
, pp. 1513-1523
-
-
Birnboim, H.C.1
Doly, J.2
-
10
-
-
84877152571
-
Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa
-
Bonnin, R. A., Poirel, L., Nordmann, P., Eikmeyer, F. G., Wibberg, D., Puhler, A., et al. (2013). Complete sequence of broad-host-range plasmid pNOR-2000 harbouring the metallo-beta-lactamase gene blaVIM-2 from Pseudomonas aeruginosa. J. Antimicrob. Chemother. 68, 1060-1065. doi: 10.1093/jac/dks526.
-
(2013)
J. Antimicrob. Chemother
, vol.68
, pp. 1060-1065
-
-
Bonnin, R.A.1
Poirel, L.2
Nordmann, P.3
Eikmeyer, F.G.4
Wibberg, D.5
Puhler, A.6
-
11
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
Carver, T., Berriman, M., Tivey, A., Patel, C., Bohme, U., Barrell, B. G., et al. (2008). Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 24, 2672-2676. doi: 10.1093/bioinformatics/btn529.
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
-
12
-
-
84891774001
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
Caspi, R., Altman, T., Billington, R., Dreher, K., Foerster, H., Fulcher, C. A., et al. (2014). The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 42, D459-D471. doi: 10.1093/nar/gkt1103.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D459-D471
-
-
Caspi, R.1
Altman, T.2
Billington, R.3
Dreher, K.4
Foerster, H.5
Fulcher, C.A.6
-
13
-
-
44649085516
-
The repABC plasmid family
-
Cevallos, M. A., Cervantes-Rivera, R., and Gutierrez-Rios, R. M. (2008). The repABC plasmid family. Plasmid. 60, 19-37. doi: 10.1016/j.plasmid.2008.03.001.
-
(2008)
Plasmid
, vol.60
, pp. 19-37
-
-
Cevallos, M.A.1
Cervantes-Rivera, R.2
Gutierrez-Rios, R.M.3
-
14
-
-
84862923271
-
Vanillin catabolism in Rhodococcus jostii RHA1
-
Chen, H. P., Chow, M., Liu, C. C., Lau, A., Liu, J., and Eltis, L. D. (2012). Vanillin catabolism in Rhodococcus jostii RHA1. Appl. Environ. Microbiol. 78, 586-588. doi: 10.1128/AEM.06876-11.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 586-588
-
-
Chen, H.P.1
Chow, M.2
Liu, C.C.3
Lau, A.4
Liu, J.5
Eltis, L.D.6
-
15
-
-
0042121237
-
Multiple sequence alignment with the clustal series of programs
-
Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T. J., Higgins, D. G., et al. (2003). Multiple sequence alignment with the clustal series of programs. Nucleic Acids Res. 31, 3497-3500. doi: 10.1093/nar/gkg500.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.J.5
Higgins, D.G.6
-
16
-
-
0345531106
-
Enzyme-specific profiles for genome annotation: PRIAM
-
Claudel-Renard, C., Chevalet, C., Faraut, T., and Kahn, D. (2003). Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Res. 31, 6633-6639. doi: 10.1093/nar/gkg847.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6633-6639
-
-
Claudel-Renard, C.1
Chevalet, C.2
Faraut, T.3
Kahn, D.4
-
17
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., et al. (2009). The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141-D145. doi: 10.1093/nar/gkn879.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
18
-
-
0034972431
-
Establishing a direct role for the Bartonella bacilliformis invasion-associated locus B (IalB) protein in human erythrocyte parasitism
-
Coleman, S. A., and Minnick, M. F. (2001). Establishing a direct role for the Bartonella bacilliformis invasion-associated locus B (IalB) protein in human erythrocyte parasitism. Infect. Immun. 69, 4373-4381. doi: 10.1128/IAI.69.7.4373-4381.2001.
-
(2001)
Infect. Immun
, vol.69
, pp. 4373-4381
-
-
Coleman, S.A.1
Minnick, M.F.2
-
19
-
-
0026539866
-
Assay, purification, and characterization of cobaltochelatase, a unique complex enzyme catalyzing cobalt insertion in hydrogenobyrinic acid a, c-diamide during coenzyme B12 biosynthesis in Pseudomonas denitrificans
-
Debussche, L., Couder, M., Thibaut, D., Cameron, B., Crouzet, J., and Blanche, F. (1992). Assay, purification, and characterization of cobaltochelatase, a unique complex enzyme catalyzing cobalt insertion in hydrogenobyrinic acid a, c-diamide during coenzyme B12 biosynthesis in Pseudomonas denitrificans. J. Bacteriol. 174, 7445-7451.
-
(1992)
J. Bacteriol
, vol.174
, pp. 7445-7451
-
-
Debussche, L.1
Couder, M.2
Thibaut, D.3
Cameron, B.4
Crouzet, J.5
Blanche, F.6
-
20
-
-
84857135143
-
Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria)
-
Dziewit, L., Baj, J., Szuplewska, M., Maj, A., Tabin, M., Czyzkowska, A., et al. (2012). Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria). PLoS ONE 7:e32277. doi: 10.1371/journal.pone.0032277.
-
(2012)
PLoS ONE
, vol.7
-
-
Dziewit, L.1
Baj, J.2
Szuplewska, M.3
Maj, A.4
Tabin, M.5
Czyzkowska, A.6
-
21
-
-
84924243810
-
Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments
-
Dziewit, L., and Bartosik, D. (2014). Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments. Front. Microbiol. 5:596. doi: 10.3389/fmicb.2014.00596.
-
(2014)
Front. Microbiol
, vol.5
, pp. 596
-
-
Dziewit, L.1
Bartosik, D.2
-
22
-
-
84893652508
-
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids
-
Dziewit, L., Czarnecki, J., Wibberg, D., Radlinska, M., Mrozek, P., Szymczak, M., et al. (2014a). Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids. BMC Genomics 15:124. doi: 10.1186/1471-2164-15-124.
-
(2014)
BMC Genomics
, vol.15
, pp. 124
-
-
Dziewit, L.1
Czarnecki, J.2
Wibberg, D.3
Radlinska, M.4
Mrozek, P.5
Szymczak, M.6
-
23
-
-
84908388235
-
Molecular characterization of a novel temperate Sinorhizobium bacteriophage, FLM21, encoding DNA methyltransferase with CcrM-like specificity
-
Dziewit, L., Oscik, K., Bartosik, D., and Radlinska, M. (2014b). Molecular characterization of a novel temperate Sinorhizobium bacteriophage, FLM21, encoding DNA methyltransferase with CcrM-like specificity. J. Virol. 88, 13111-13124. doi: 10.1128/JVI.01875-14.
-
(2014)
J. Virol
, vol.88
, pp. 13111-13124
-
-
Dziewit, L.1
Oscik, K.2
Bartosik, D.3
Radlinska, M.4
-
24
-
-
84874940359
-
Characterization of Halomonas sp. ZM3 isolated from the Zelazny most post-flotation waste reservoir, with a special focus on its mobile DNA
-
Dziewit, L., Pyzik, A., Matlakowska, R., Baj, J., Szuplewska, M., and Bartosik, D. (2013). Characterization of Halomonas sp. ZM3 isolated from the Zelazny most post-flotation waste reservoir, with a special focus on its mobile DNA. BMC Microbiol. 13:59. doi: 10.1186/1471-2180-13-59.
-
(2013)
BMC Microbiol
, vol.13
, pp. 59
-
-
Dziewit, L.1
Pyzik, A.2
Matlakowska, R.3
Baj, J.4
Szuplewska, M.5
Bartosik, D.6
-
25
-
-
0027132575
-
ABC transporters: bacterial exporters
-
Fath, M. J., and Kolter, R. (1993). ABC transporters: bacterial exporters. Microbiol. Rev. 57, 995-1017.
-
(1993)
Microbiol. Rev
, vol.57
, pp. 995-1017
-
-
Fath, M.J.1
Kolter, R.2
-
26
-
-
0037620684
-
Colony PCR amplification of actinomycete DNA
-
Gathogo, E. W., Waugh, A. C., Peric, N., Redpath, M. B., and Long, P. F. (2003). Colony PCR amplification of actinomycete DNA. J. Antibiot. 56, 423-424. doi: 10.7164/antibiotics.56.423.
-
(2003)
J. Antibiot
, vol.56
, pp. 423-424
-
-
Gathogo, E.W.1
Waugh, A.C.2
Peric, N.3
Redpath, M.B.4
Long, P.F.5
-
27
-
-
33646012932
-
Comparative genomics of NAD biosynthesis in cyanobacteria
-
Gerdes, S. Y., Kurnasov, O. V., Shatalin, K., Polanuyer, B., Sloutsky, R., Vonstein, V., et al. (2006). Comparative genomics of NAD biosynthesis in cyanobacteria. J. Bacteriol. 188, 3012-3023. doi: 10.1128/JB.188.8.3012-3023.2006.
-
(2006)
J. Bacteriol
, vol.188
, pp. 3012-3023
-
-
Gerdes, S.Y.1
Kurnasov, O.V.2
Shatalin, K.3
Polanuyer, B.4
Sloutsky, R.5
Vonstein, V.6
-
28
-
-
84866919992
-
Plasmids foster diversification and adaptation of bacterial populations in soil
-
Heuer, H., and Smalla, K. (2012). Plasmids foster diversification and adaptation of bacterial populations in soil. FEMS Microbiol. Rev. 36, 1083-1104. doi: 10.1111/j.1574-6976.2012.00337.x.
-
(2012)
FEMS Microbiol. Rev
, vol.36
, pp. 1083-1104
-
-
Heuer, H.1
Smalla, K.2
-
29
-
-
0034669051
-
Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins
-
Hoiczyk, E., Roggenkamp, A., Reichenbecher, M., Lupas, A., and Heesemann, J. (2000). Structure and sequence analysis of Yersinia YadA and Moraxella UspAs reveal a novel class of adhesins. EMBO J. 19, 5989-5999. doi: 10.1093/emboj/19.22.5989.
-
(2000)
EMBO J
, vol.19
, pp. 5989-5999
-
-
Hoiczyk, E.1
Roggenkamp, A.2
Reichenbecher, M.3
Lupas, A.4
Heesemann, J.5
-
30
-
-
84880272508
-
Complete sequences of two plasmids in a blaNDM-1-positive Klebsiella oxytoca isolate from Taiwan
-
Huang, T. W., Wang, J. T., Lauderdale, T. L., Liao, T. L., Lai, J. F., Tan, M. C., et al. (2013). Complete sequences of two plasmids in a blaNDM-1-positive Klebsiella oxytoca isolate from Taiwan. Antimicrob. Agents Chemother. 57, 4072-4076. doi: 10.1128/AAC.02266-12.
-
(2013)
Antimicrob. Agents Chemother
, vol.57
, pp. 4072-4076
-
-
Huang, T.W.1
Wang, J.T.2
Lauderdale, T.L.3
Liao, T.L.4
Lai, J.F.5
Tan, M.C.6
-
31
-
-
0034084456
-
Tn5044, a novel Tn3 family transposon coding for temperature-sensitive mercury resistance
-
Kholodii, G., Yurieva, O., Mindlin, S., Gorlenko, Z., Rybochkin, V., and Nikiforov, V. (2000). Tn5044, a novel Tn3 family transposon coding for temperature-sensitive mercury resistance. Res. Microbiol. 151, 291-302. doi: 10.1016/S0923-2508(00)00149-2.
-
(2000)
Res. Microbiol
, vol.151
, pp. 291-302
-
-
Kholodii, G.1
Yurieva, O.2
Mindlin, S.3
Gorlenko, Z.4
Rybochkin, V.5
Nikiforov, V.6
-
32
-
-
0347285389
-
Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C
-
Klockgether, J., Reva, O., Larbig, K., and Tummler, B. (2004). Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J. Bacteriol. 186, 518-534. doi: 10.1128/JB.186.2.518-534.2004.
-
(2004)
J. Bacteriol
, vol.186
, pp. 518-534
-
-
Klockgether, J.1
Reva, O.2
Larbig, K.3
Tummler, B.4
-
33
-
-
0001857117
-
'16S/23S rRNA sequencing'
-
eds E. Stackebrandt and M. Goodfellow. (New York, NY: Wiley)
-
Lane, D. J. (1991). "16S/23S rRNA sequencing, " in Nucleic Acid Techniques in Bacterial Systematics, eds E. Stackebrandt and M. Goodfellow. (New York, NY: Wiley), 115-175.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
34
-
-
0022572331
-
Halophilic and halotolerant microorganisms-an overview and historical perspective
-
Larson, H. (1986). Halophilic and halotolerant microorganisms-an overview and historical perspective. FEMS Microbiol. Rev. 39, 3-7. doi: 10.1111/j.1574-6968.1986.tb01835.x.
-
(1986)
FEMS Microbiol. Rev
, vol.39
, pp. 3-7
-
-
Larson, H.1
-
35
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T. M., and Eddy, S. R. (1997). tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964. doi: 10.1093/nar/25.5.0955.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
36
-
-
84892601578
-
Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria)-structure, diversity and evolution
-
Maj, A., Dziewit, L., Czarnecki, J., Wlodarczyk, M., Baj, J., Skrzypczyk, G., et al. (2013). Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria)-structure, diversity and evolution. PLoS ONE 8:e80258. doi: 10.1371/journal.pone.0080258.
-
(2013)
PLoS ONE
, vol.8
-
-
Maj, A.1
Dziewit, L.2
Czarnecki, J.3
Wlodarczyk, M.4
Baj, J.5
Skrzypczyk, G.6
-
37
-
-
0035145516
-
Identification of a plasmid-encoded gene from Haemophilus ducreyi which confers NAD independence
-
Martin, P. R., Shea, R. J., and Mulks, M. H. (2001). Identification of a plasmid-encoded gene from Haemophilus ducreyi which confers NAD independence. J. Bacteriol. 183, 1168-1174. doi: 10.1128/JB.183.4.1168-1174.2001.
-
(2001)
J. Bacteriol
, vol.183
, pp. 1168-1174
-
-
Martin, P.R.1
Shea, R.J.2
Mulks, M.H.3
-
38
-
-
36148939869
-
Characterization of ligV essential for catabolism of vanillin by Sphingomonas paucimobilis SYK-6
-
Masai, E., Yamamoto, Y., Inoue, T., Takamura, K., Hara, H., Kasai, D., et al. (2007). Characterization of ligV essential for catabolism of vanillin by Sphingomonas paucimobilis SYK-6. Biosci. Biotechnol. Biochem. 71, 2487-2492. doi: 10.1271/bbb.70267.
-
(2007)
Biosci. Biotechnol. Biochem
, vol.71
, pp. 2487-2492
-
-
Masai, E.1
Yamamoto, Y.2
Inoue, T.3
Takamura, K.4
Hara, H.5
Kasai, D.6
-
39
-
-
77950441162
-
Biotransformation of organic-rich copper-bearing black shale by indigenous microorganisms isolated from lubin copper mine (Poland)
-
Matlakowska, R., Narkiewicz, W., and Sklodowska, A. (2010). Biotransformation of organic-rich copper-bearing black shale by indigenous microorganisms isolated from lubin copper mine (Poland). Environ. Sci. Technol. 44, 2433-2440. doi: 10.1021/es903298t.
-
(2010)
Environ. Sci. Technol
, vol.44
, pp. 2433-2440
-
-
Matlakowska, R.1
Narkiewicz, W.2
Sklodowska, A.3
-
40
-
-
68849110680
-
The culturable bacteria isolated from organic-rich black shale potentially useful in biometallurgical procedures
-
Matlakowska, R., and Sklodowska, A. (2009). The culturable bacteria isolated from organic-rich black shale potentially useful in biometallurgical procedures. J. Appl. Microbiol. 107, 858-866. doi: 10.1111/j.1365-2672.2009.04261.x.
-
(2009)
J. Appl. Microbiol
, vol.107
, pp. 858-866
-
-
Matlakowska, R.1
Sklodowska, A.2
-
41
-
-
79955470687
-
Biodegradation of Kupferschiefer black shale organic matter (Fore-Sudetic Monocline, Poland) by indigenous microorganisms
-
Matlakowska, R., and Sklodowska, A. (2011). Biodegradation of Kupferschiefer black shale organic matter (Fore-Sudetic Monocline, Poland) by indigenous microorganisms. Chemosphere 83, 1255-1261. doi: 10.1016/j.chemosphere.2011.03.003.
-
(2011)
Chemosphere
, vol.83
, pp. 1255-1261
-
-
Matlakowska, R.1
Sklodowska, A.2
-
42
-
-
84862313537
-
Bioweathering of kupferschiefer black shale (Fore-Sudetic Monocline, SW Poland) by indigenous bacteria: implication for dissolution and precipitation of minerals in deep underground mine
-
Matlakowska, R., Sklodowska, A., and Nejbert, K. (2012). Bioweathering of kupferschiefer black shale (Fore-Sudetic Monocline, SW Poland) by indigenous bacteria: implication for dissolution and precipitation of minerals in deep underground mine. FEMS Microbiol. Ecol. 81, 99-110. doi: 10.1111/j.1574-6941.2012.01326.x.
-
(2012)
FEMS Microbiol. Ecol
, vol.81
, pp. 99-110
-
-
Matlakowska, R.1
Sklodowska, A.2
Nejbert, K.3
-
43
-
-
0037561991
-
GenDB-an open source genome annotation system for prokaryote genomes
-
Meyer, F., Goesmann, A., Mchardy, A. C., Bartels, D., Bekel, T., Clausen, J., et al. (2003). GenDB-an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 31, 2187-2195. doi: 10.1093/nar/gkg312.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2187-2195
-
-
Meyer, F.1
Goesmann, A.2
Mchardy, A.C.3
Bartels, D.4
Bekel, T.5
Clausen, J.6
-
44
-
-
71349084318
-
A Tn5051-like mer-containing transposon identified in a heavy metal tolerant strain Achromobacter sp. AO22
-
Ng, S. P., Davis, B., Palombo, E. A., and Bhave, M. (2009). A Tn5051-like mer-containing transposon identified in a heavy metal tolerant strain Achromobacter sp. AO22. BMC Res. Notes 2:38. doi: 10.1186/1756-0500-2-38.
-
(2009)
BMC Res. Notes
, vol.2
, pp. 38
-
-
Ng, S.P.1
Davis, B.2
Palombo, E.A.3
Bhave, M.4
-
45
-
-
0023260966
-
Susceptibility of halobacteria to heavy metals
-
Nieto, J. J., Ventosa, A., and Ruiz-Berraquero, F. (1987). Susceptibility of halobacteria to heavy metals. Appl. Environ. Microbiol. 53, 1199-1202.
-
(1987)
Appl. Environ. Microbiol
, vol.53
, pp. 1199-1202
-
-
Nieto, J.J.1
Ventosa, A.2
Ruiz-Berraquero, F.3
-
46
-
-
84878637752
-
Impact of catabolic plasmids on host cell physiology
-
Nojiri, H. (2013). Impact of catabolic plasmids on host cell physiology. Curr. Opin. Biotechnol. 24, 423-430. doi: 10.1016/j.copbio.2012.09.014.
-
(2013)
Curr. Opin. Biotechnol
, vol.24
, pp. 423-430
-
-
Nojiri, H.1
-
47
-
-
0032758494
-
Origin of the Kupferschiefer polymetallic mineralization in Poland
-
Oszczepalski, S. (1999). Origin of the Kupferschiefer polymetallic mineralization in Poland. Mineral. Deposita 34, 599-613. doi: 10.1007/s001260050222.
-
(1999)
Mineral. Deposita
, vol.34
, pp. 599-613
-
-
Oszczepalski, S.1
-
48
-
-
0035950154
-
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
-
Parkhill, J., Dougan, G., James, K. D., Thomson, N. R., Pickard, D., Wain, J., et al. (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413, 848-852. doi: 10.1038/35101607.
-
(2001)
Nature
, vol.413
, pp. 848-852
-
-
Parkhill, J.1
Dougan, G.2
James, K.D.3
Thomson, N.R.4
Pickard, D.5
Wain, J.6
-
49
-
-
84908176941
-
The complete nucleotide sequence of the multi-drug resistance-encoding IncL/M plasmid pACM1
-
Preston, K. E., Hitchcock, S. A., Aziz, A. Y., and Tine, J. A. (2014). The complete nucleotide sequence of the multi-drug resistance-encoding IncL/M plasmid pACM1. Plasmid 76, 54-65. doi: 10.1016/j.plasmid.2014.08.005.
-
(2014)
Plasmid
, vol.76
, pp. 54-65
-
-
Preston, K.E.1
Hitchcock, S.A.2
Aziz, A.Y.3
Tine, J.A.4
-
50
-
-
84910045966
-
Characterization and comparative analysis of antibiotic resistance plasmids isolated from a wastewater treatment plant
-
Rahube, T. O., Viana, L. S., Koraimann, G., and Yost, C. K. (2014). Characterization and comparative analysis of antibiotic resistance plasmids isolated from a wastewater treatment plant. Front. Microbiol. 5:558. doi: 10.3389/fmicb.2014.00558.
-
(2014)
Front. Microbiol
, vol.5
, pp. 558
-
-
Rahube, T.O.1
Viana, L.S.2
Koraimann, G.3
Yost, C.K.4
-
51
-
-
84876437780
-
Biotransformation of copper from Kupferschiefer black shale (Fore-Sudetic Monocline, Poland) by yeast Rhodotorula mucilaginosa LM9
-
Rajpert, L., Sklodowska, A., and Matlakowska, R. (2013). Biotransformation of copper from Kupferschiefer black shale (Fore-Sudetic Monocline, Poland) by yeast Rhodotorula mucilaginosa LM9. Chemosphere 91, 1257-1265. doi: 10.1016/j.chemosphere.2013.02.022.
-
(2013)
Chemosphere
, vol.91
, pp. 1257-1265
-
-
Rajpert, L.1
Sklodowska, A.2
Matlakowska, R.3
-
53
-
-
84892462686
-
Narrow-host-range bacteriophages that infect Rhizobium etli associate with distinct genomic types
-
Santamaria, R. I., Bustos, P., Sepulveda-Robles, O., Lozano, L., Rodriguez, C., Fernandez, J. L., et al. (2014). Narrow-host-range bacteriophages that infect Rhizobium etli associate with distinct genomic types. Appl. Environ. Microbiol. 80, 446-454. doi: 10.1128/AEM.02256-13.
-
(2014)
Appl. Environ. Microbiol
, vol.80
, pp. 446-454
-
-
Santamaria, R.I.1
Bustos, P.2
Sepulveda-Robles, O.3
Lozano, L.4
Rodriguez, C.5
Fernandez, J.L.6
-
54
-
-
0023127806
-
Universal chemical assay for the detection and determination of siderophores
-
Schwyn, B., and Neilands, J. B. (1987). Universal chemical assay for the detection and determination of siderophores. Anal. Biochem. 160, 47-56. doi: 10.1016/0003-2697(87)90612-9.
-
(1987)
Anal. Biochem
, vol.160
, pp. 47-56
-
-
Schwyn, B.1
Neilands, J.B.2
-
55
-
-
0030574276
-
Bacterial resistances to toxic metal ions-a review
-
Silver, S. (1996). Bacterial resistances to toxic metal ions-a review. Gene 179, 9-19. doi: 10.1016/S0378-1119(96)00323-X.
-
(1996)
Gene
, vol.179
, pp. 9-19
-
-
Silver, S.1
-
56
-
-
28644437016
-
A bacterial view of the periodic table: genes and proteins for toxic inorganic ions
-
Silver, S., and Phung Le, T. (2005a). A bacterial view of the periodic table: genes and proteins for toxic inorganic ions. J. Ind. Microbiol. Biotechnol. 32, 587-605. doi: 10.1007/s10295-005-0019-6.
-
(2005)
J. Ind. Microbiol. Biotechnol
, vol.32
, pp. 587-605
-
-
Silver, S.1
Phung Le, T.2
-
57
-
-
13544263302
-
Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic
-
Silver, S., and Phung Le, T. (2005b). Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic. Appl. Environ. Microbiol. 71, 599-608. doi: 10.1128/AEM.71.2.599-608.2005.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 599-608
-
-
Silver, S.1
Phung Le, T.2
-
58
-
-
17744379158
-
Extracellular polymer produced in the presence of copper minerals during bioleaching
-
Sklodowska, A., Matlakowska, R., and Bal, K. (2005). Extracellular polymer produced in the presence of copper minerals during bioleaching. Geomicrobiol. J. 22, 1-9. doi: 10.1080/01490450590922596.
-
(2005)
Geomicrobiol. J
, vol.22
, pp. 1-9
-
-
Sklodowska, A.1
Matlakowska, R.2
Bal, K.3
-
59
-
-
67649258517
-
Cytoplasmic pH measurement and homeostasis in bacteria and archaea
-
Slonczewski, J. L., Fujisawa, M., Dopson, M., and Krulwich, T. A. (2009). Cytoplasmic pH measurement and homeostasis in bacteria and archaea. Adv. Microb. Physiol. 55, 317. doi: 10.1016/S0065-2911(09)05501-5.
-
(2009)
Adv. Microb. Physiol
, vol.55
, pp. 317
-
-
Slonczewski, J.L.1
Fujisawa, M.2
Dopson, M.3
Krulwich, T.A.4
-
60
-
-
65549122062
-
Horizontal gene transfer in metal and radionuclide contaminated soils
-
Sobecky, P. A., and Coombs, J. M. (2009). Horizontal gene transfer in metal and radionuclide contaminated soils. Methods Mol. Biol. 532, 455-472. doi: 10.1007/978-1-60327-853-9_26.
-
(2009)
Methods Mol. Biol
, vol.532
, pp. 455-472
-
-
Sobecky, P.A.1
Coombs, J.M.2
-
61
-
-
0028554641
-
Kupferschiefer mineralization in the light of organic geochemistry and coal petrology studies
-
Speczik, S. (1994). Kupferschiefer mineralization in the light of organic geochemistry and coal petrology studies. Geol. Q. 38, 639-650.
-
(1994)
Geol. Q
, vol.38
, pp. 639-650
-
-
Speczik, S.1
-
62
-
-
0029416429
-
The Kupferschiefer mineralization of Central Europe: new aspects and major areas of future research
-
Speczik, S. (1995). The Kupferschiefer mineralization of Central Europe: new aspects and major areas of future research. Ore. Geol. Rev. 9, 411-426. doi: 10.1016/0169-1368(94)00022-G.
-
(1995)
Ore. Geol. Rev
, vol.9
, pp. 411-426
-
-
Speczik, S.1
-
63
-
-
0026704310
-
Construction of a Neisseria gonorrhoeae MS11 derivative deficient in NgoMI restriction and modification
-
Stein, D. C., Chien, R., and Seifert, H. S. (1992). Construction of a Neisseria gonorrhoeae MS11 derivative deficient in NgoMI restriction and modification. J. Bacteriol. 174, 4899-4906.
-
(1992)
J. Bacteriol
, vol.174
, pp. 4899-4906
-
-
Stein, D.C.1
Chien, R.2
Seifert, H.S.3
-
64
-
-
60349100621
-
Identification of a mosaic transposable element of Paracoccus marcusii composed of insertion sequence ISPmar4 (ISAs1 family) and an IS1247a-driven transposable module (TMo)
-
Szuplewska, M., and Bartosik, D. (2009). Identification of a mosaic transposable element of Paracoccus marcusii composed of insertion sequence ISPmar4 (ISAs1 family) and an IS1247a-driven transposable module (TMo). FEMS Microbiol. Lett. 292, 216-221. doi: 10.1111/j.1574-6968.2009.01495.x.
-
(2009)
FEMS Microbiol. Lett
, vol.292
, pp. 216-221
-
-
Szuplewska, M.1
Bartosik, D.2
-
65
-
-
84905974191
-
Mobility and generation of mosaic non-autonomous transposons by Tn3-derived inverted-repeat miniature elements (TIMEs)
-
Szuplewska, M., Ludwiczak, M., Lyzwa, K., Czarnecki, J., and Bartosik, D. (2014). Mobility and generation of mosaic non-autonomous transposons by Tn3-derived inverted-repeat miniature elements (TIMEs). PLoS ONE 9:e105010. doi: 10.1371/journal.pone.0105010.
-
(2014)
PLoS ONE
, vol.9
-
-
Szuplewska, M.1
Ludwiczak, M.2
Lyzwa, K.3
Czarnecki, J.4
Bartosik, D.5
-
66
-
-
84858406041
-
Large-scale analysis of plasmid relationships through gene-sharing networks
-
Tamminen, M., Virta, M., Fani, R., and Fondi, M. (2012). Large-scale analysis of plasmid relationships through gene-sharing networks. Mol. Biol. Evol. 29, 1225-1240. doi: 10.1093/molbev/msr292.
-
(2012)
Mol. Biol. Evol
, vol.29
, pp. 1225-1240
-
-
Tamminen, M.1
Virta, M.2
Fani, R.3
Fondi, M.4
-
67
-
-
84890330527
-
MEGA6: molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729. doi: 10.1093/molbev/mst197.
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
68
-
-
0002480530
-
Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development
-
Wheatcroft, R., Mcrae, G. D., and Miller, R. W. (1990). Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development. Mol. Plant Microbe. Inter. 3, 9-17. doi: 10.1094/MPMI-3-009.
-
(1990)
Mol. Plant Microbe. Inter
, vol.3
, pp. 9-17
-
-
Wheatcroft, R.1
Mcrae, G.D.2
Miller, R.W.3
|