-
1
-
-
0031793773
-
Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility
-
98939, 9841665
-
Baker SC, Ferguson SJ, Ludwig B, Page MD, Richter OM, van Spanning RJ. Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility. Microbiol Mol Biol Rev 1998, 62(4):1046-1078. 98939, 9841665.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, Issue.4
, pp. 1046-1078
-
-
Baker, S.C.1
Ferguson, S.J.2
Ludwig, B.3
Page, M.D.4
Richter, O.M.5
van Spanning, R.J.6
-
2
-
-
0029076627
-
Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus
-
10.1099/13500872-141-6-1469, 7545513
-
Katayama Y, Hiraishi A, Kuraishi H. Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 1995, 141:1469-1477. 10.1099/13500872-141-6-1469, 7545513.
-
(1995)
Microbiology
, vol.141
, pp. 1469-1477
-
-
Katayama, Y.1
Hiraishi, A.2
Kuraishi, H.3
-
3
-
-
33750031030
-
Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections
-
10.1099/ijs.0.64401-0, 17012585
-
Kelly DP, Euzeby JP, Goodhew CF, Wood AP. Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections. Int J Syst Evol Microbiol 2006, 56:2495-2500. 10.1099/ijs.0.64401-0, 17012585.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 2495-2500
-
-
Kelly, D.P.1
Euzeby, J.P.2
Goodhew, C.F.3
Wood, A.P.4
-
4
-
-
33646183453
-
Nitrate-dependent [Fe(II)EDTA]2- oxidation by Paracoccus ferrooxidans sp. nov., isolated from a denitrifying bioreactor
-
10.1016/j.syapm.2005.08.001, 16682296
-
Kumaraswamy R, Sjollema K, Kuenen G, van Loosdrecht M, Muyzer G. Nitrate-dependent [Fe(II)EDTA]2- oxidation by Paracoccus ferrooxidans sp. nov., isolated from a denitrifying bioreactor. Syst Appl Microbiol 2006, 29:276-286. 10.1016/j.syapm.2005.08.001, 16682296.
-
(2006)
Syst Appl Microbiol
, vol.29
, pp. 276-286
-
-
Kumaraswamy, R.1
Sjollema, K.2
Kuenen, G.3
van Loosdrecht, M.4
Muyzer, G.5
-
5
-
-
0031824087
-
Paracoccus methylutens sp. nov. - a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane
-
Doronina NV, Trotsenko YA, Krausova VI, Suzina NE. Paracoccus methylutens sp. nov. - a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane. Syst Appl Microbiol 1998, 21:230-236.
-
(1998)
Syst Appl Microbiol
, vol.21
, pp. 230-236
-
-
Doronina, N.V.1
Trotsenko, Y.A.2
Krausova, V.I.3
Suzina, N.E.4
-
6
-
-
84876863116
-
Tenax TA extraction to understand the rate-limiting factors in methyl-beta-cyclodextrin-enhanced bioremediation of PAH-contaminated soil
-
10.1007/s10532-012-9593-2, 23001628
-
Sun M, Luo Y, Teng Y, Christie P, Jia Z, Li Z. Tenax TA extraction to understand the rate-limiting factors in methyl-beta-cyclodextrin-enhanced bioremediation of PAH-contaminated soil. Biodegradation 2013, 24:365-375. 10.1007/s10532-012-9593-2, 23001628.
-
(2013)
Biodegradation
, vol.24
, pp. 365-375
-
-
Sun, M.1
Luo, Y.2
Teng, Y.3
Christie, P.4
Jia, Z.5
Li, Z.6
-
7
-
-
79952804546
-
Genome sequence of Paracoccus sp. Strain TRP, a chlorpyrifos biodegrader
-
10.1128/JB.00014-11, 3067656, 21257769
-
Li K, Wang S, Shi Y, Qu J, Zhai Y, Xu L, Xu Y, Song J, Liu L, Rahman MA, et al. Genome sequence of Paracoccus sp. Strain TRP, a chlorpyrifos biodegrader. J Bacteriol 2011, 193(7):1786-1787. 10.1128/JB.00014-11, 3067656, 21257769.
-
(2011)
J Bacteriol
, vol.193
, Issue.7
, pp. 1786-1787
-
-
Li, K.1
Wang, S.2
Shi, Y.3
Qu, J.4
Zhai, Y.5
Xu, L.6
Xu, Y.7
Song, J.8
Liu, L.9
Rahman, M.A.10
-
8
-
-
80053609595
-
Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide
-
10.1128/JB.05667-11, 3187436, 21914898
-
Siddavattam D, Karegoudar TB, Mudde SK, Kumar N, Baddam R, Avasthi TS, Ahmed N. Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide. J Bacteriol 2011, 193(19):5598-5599. 10.1128/JB.05667-11, 3187436, 21914898.
-
(2011)
J Bacteriol
, vol.193
, Issue.19
, pp. 5598-5599
-
-
Siddavattam, D.1
Karegoudar, T.B.2
Mudde, S.K.3
Kumar, N.4
Baddam, R.5
Avasthi, T.S.6
Ahmed, N.7
-
9
-
-
0034491242
-
Plasmid occurrence and diversity in the genus Paracoccus
-
Baj J, Piechucka E, Bartosik D, Wlodarczyk M. Plasmid occurrence and diversity in the genus Paracoccus. Acta Microbiol Pol 2000, 49(3-4):265-270.
-
(2000)
Acta Microbiol Pol
, vol.49
, Issue.3-4
, pp. 265-270
-
-
Baj, J.1
Piechucka, E.2
Bartosik, D.3
Wlodarczyk, M.4
-
10
-
-
42549100016
-
Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12
-
10.1128/JB.01878-07, 2347374, 18296518
-
Bartosik D, Putyrski M, Dziewit L, Malewska E, Szymanik M, Jagiello E, Lukasik J, Baj J. Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12. J Bacteriol 2008, 190(9):3306-3313. 10.1128/JB.01878-07, 2347374, 18296518.
-
(2008)
J Bacteriol
, vol.190
, Issue.9
, pp. 3306-3313
-
-
Bartosik, D.1
Putyrski, M.2
Dziewit, L.3
Malewska, E.4
Szymanik, M.5
Jagiello, E.6
Lukasik, J.7
Baj, J.8
-
11
-
-
0036739786
-
Molecular characterization of functional modules of plasmid pWKS1 of Paracoccus pantotrophus DSM 11072
-
Bartosik D, Baj J, Sochacka M, Piechucka E, Wlodarczyk M. Molecular characterization of functional modules of plasmid pWKS1 of Paracoccus pantotrophus DSM 11072. Microbiology 2002, 148(Pt 9):2847-2856.
-
(2002)
Microbiology
, vol.148
, Issue.PART 9
, pp. 2847-2856
-
-
Bartosik, D.1
Baj, J.2
Sochacka, M.3
Piechucka, E.4
Wlodarczyk, M.5
-
12
-
-
0031766816
-
Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1
-
10.1099/00221287-144-11-3149, 9846751
-
Bartosik D, Baj J, Wlodarczyk M. Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1. Microbiology 1998, 144:3149-3157. 10.1099/00221287-144-11-3149, 9846751.
-
(1998)
Microbiology
, vol.144
, pp. 3149-3157
-
-
Bartosik, D.1
Baj, J.2
Wlodarczyk, M.3
-
13
-
-
0034950005
-
Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus
-
10.1006/plas.2000.1505, 11407917
-
Bartosik D, Witkowska M, Baj J, Wlodarczyk M. Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus. Plasmid 2001, 45(3):222-226. 10.1006/plas.2000.1505, 11407917.
-
(2001)
Plasmid
, vol.45
, Issue.3
, pp. 222-226
-
-
Bartosik, D.1
Witkowska, M.2
Baj, J.3
Wlodarczyk, M.4
-
14
-
-
0036129689
-
Characterization of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits
-
Bartosik D, Baj J, Bartosik AA, Wlodarczyk M. Characterization of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits. Microbiology 2002, 148(Pt 3):871-881.
-
(2002)
Microbiology
, vol.148
, Issue.PART 3
, pp. 871-881
-
-
Bartosik, D.1
Baj, J.2
Bartosik, A.A.3
Wlodarczyk, M.4
-
15
-
-
0038039245
-
Identification and characterization of transposable elements of Paracoccus pantotrophus
-
10.1128/JB.185.13.3753-3763.2003, 161580, 12813068
-
Bartosik D, Sochacka M, Baj J. Identification and characterization of transposable elements of Paracoccus pantotrophus. J Bacteriol 2003, 185(13):3753-3763. 10.1128/JB.185.13.3753-3763.2003, 161580, 12813068.
-
(2003)
J Bacteriol
, vol.185
, Issue.13
, pp. 3753-3763
-
-
Bartosik, D.1
Sochacka, M.2
Baj, J.3
-
16
-
-
2142800596
-
Identification and distribution of insertion sequences of Paracoccus solventivorans
-
10.1128/AEM.69.12.7002-7008.2003, 310034, 14660342
-
Bartosik D, Szymanik M, Baj J. Identification and distribution of insertion sequences of Paracoccus solventivorans. Appl Environ Microbiol 2003, 69(12):7002-7008. 10.1128/AEM.69.12.7002-7008.2003, 310034, 14660342.
-
(2003)
Appl Environ Microbiol
, vol.69
, Issue.12
, pp. 7002-7008
-
-
Bartosik, D.1
Szymanik, M.2
Baj, J.3
-
17
-
-
84857135143
-
Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria)
-
10.1371/journal.pone.0032277, 3281130, 22359677
-
Dziewit L, Baj J, Szuplewska M, Maj A, Tabin M, Czyzkowska A, Skrzypczyk G, Adamczuk M, Sitarek T, Stawinski P, et al. Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria). PLoS One 2012, 7(2):e32277. 10.1371/journal.pone.0032277, 3281130, 22359677.
-
(2012)
PLoS One
, vol.7
, Issue.2
-
-
Dziewit, L.1
Baj, J.2
Szuplewska, M.3
Maj, A.4
Tabin, M.5
Czyzkowska, A.6
Skrzypczyk, G.7
Adamczuk, M.8
Sitarek, T.9
Stawinski, P.10
-
18
-
-
33645535950
-
Identification of a transposable genomic island of Paracoccus pantotrophus DSM 11072 by its transposition to a novel entrapment vector pMMB2
-
Mikosa M, Sochacka-Pietal M, Baj J, Bartosik D. Identification of a transposable genomic island of Paracoccus pantotrophus DSM 11072 by its transposition to a novel entrapment vector pMMB2. Microbiology 2006, 152(Pt 4):1063-1073.
-
(2006)
Microbiology
, vol.152
, Issue.PART 4
, pp. 1063-1073
-
-
Mikosa, M.1
Sochacka-Pietal, M.2
Baj, J.3
Bartosik, D.4
-
19
-
-
60349100621
-
Identification of a mosaic transposable element of Paracoccus marcusii composed of insertion sequence ISPmar4 (ISAs1 family) and an IS1247a-driven transposable module (TMo)
-
10.1111/j.1574-6968.2009.01495.x, 19187199
-
Szuplewska M, Bartosik D. Identification of a mosaic transposable element of Paracoccus marcusii composed of insertion sequence ISPmar4 (ISAs1 family) and an IS1247a-driven transposable module (TMo). FEMS Microbiol Lett 2009, 292(2):216-221. 10.1111/j.1574-6968.2009.01495.x, 19187199.
-
(2009)
FEMS Microbiol Lett
, vol.292
, Issue.2
, pp. 216-221
-
-
Szuplewska, M.1
Bartosik, D.2
-
20
-
-
0029147556
-
Isolation and characterization of a novel insertion sequence element, IS1248, in Paracoccus denitrificans
-
10.1006/plas.1995.1029, 7480167
-
van Spanning RJ, de Boer AP, Slotboom DJ, Reijnders WN, Stouthamer AH. Isolation and characterization of a novel insertion sequence element, IS1248, in Paracoccus denitrificans. Plasmid 1995, 34(1):11-21. 10.1006/plas.1995.1029, 7480167.
-
(1995)
Plasmid
, vol.34
, Issue.1
, pp. 11-21
-
-
van Spanning, R.J.1
de Boer, A.P.2
Slotboom, D.J.3
Reijnders, W.N.4
Stouthamer, A.H.5
-
21
-
-
0025358474
-
Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N, N-dimethylformamide
-
10.1099/00207713-40-3-287, 2397196
-
Urakami T, Araki H, Oyanagi H, Suzuki K, Komagata K. Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N, N-dimethylformamide. Int J Syst Bacteriol 1990, 40(3):287-291. 10.1099/00207713-40-3-287, 2397196.
-
(1990)
Int J Syst Bacteriol
, vol.40
, Issue.3
, pp. 287-291
-
-
Urakami, T.1
Araki, H.2
Oyanagi, H.3
Suzuki, K.4
Komagata, K.5
-
22
-
-
33947373975
-
The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2
-
10.1128/JB.01610-06, 1855756, 17158670
-
Dziewit L, Jazurek M, Drewniak L, Baj J, Bartosik D. The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2. J Bacteriol 2007, 189(5):1983-1997. 10.1128/JB.01610-06, 1855756, 17158670.
-
(2007)
J Bacteriol
, vol.189
, Issue.5
, pp. 1983-1997
-
-
Dziewit, L.1
Jazurek, M.2
Drewniak, L.3
Baj, J.4
Bartosik, D.5
-
23
-
-
79959744352
-
DIY series of genetic cassettes useful in construction of versatile vectors specific for Alphaproteobacteria
-
10.1016/j.mimet.2011.04.016, 21569803
-
Dziewit L, Adamczuk M, Szuplewska M, Bartosik D. DIY series of genetic cassettes useful in construction of versatile vectors specific for Alphaproteobacteria. J Microbiol Methods 2011, 86(2):166-174. 10.1016/j.mimet.2011.04.016, 21569803.
-
(2011)
J Microbiol Methods
, vol.86
, Issue.2
, pp. 166-174
-
-
Dziewit, L.1
Adamczuk, M.2
Szuplewska, M.3
Bartosik, D.4
-
24
-
-
80053546146
-
Functional characterization of the type II PamI restriction-modification system derived from plasmid pAMI7 of Paracoccus aminophilus JCM 7686
-
10.1111/j.1574-6968.2011.02388.x, 22092764
-
Dziewit L, Kuczkowska K, Adamczuk M, Radlinska M, Bartosik D. Functional characterization of the type II PamI restriction-modification system derived from plasmid pAMI7 of Paracoccus aminophilus JCM 7686. FEMS Microbiol Lett 2011, 324(1):56-63. 10.1111/j.1574-6968.2011.02388.x, 22092764.
-
(2011)
FEMS Microbiol Lett
, vol.324
, Issue.1
, pp. 56-63
-
-
Dziewit, L.1
Kuczkowska, K.2
Adamczuk, M.3
Radlinska, M.4
Bartosik, D.5
-
25
-
-
77749245788
-
Plasmid pAMI2 of Paracoccus aminophilus JCM 7686 carries N, N-dimethylformamide degradation-related genes whose expression is activated by a LuxR family regulator
-
10.1128/AEM.01926-09, 2837997, 20118371
-
Dziewit L, Dmowski M, Baj J, Bartosik D. Plasmid pAMI2 of Paracoccus aminophilus JCM 7686 carries N, N-dimethylformamide degradation-related genes whose expression is activated by a LuxR family regulator. Appl Environ Microbiol 2010, 76(6):1861-1869. 10.1128/AEM.01926-09, 2837997, 20118371.
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.6
, pp. 1861-1869
-
-
Dziewit, L.1
Dmowski, M.2
Baj, J.3
Bartosik, D.4
-
26
-
-
0034192966
-
The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences
-
10.1111/j.1574-6968.2000.tb09074.x, 10779705
-
Studholme DJ, Buck M. The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences. FEMS Microbiol Lett 2000, 186:1-9. 10.1111/j.1574-6968.2000.tb09074.x, 10779705.
-
(2000)
FEMS Microbiol Lett
, vol.186
, pp. 1-9
-
-
Studholme, D.J.1
Buck, M.2
-
27
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
10.1016/j.mib.2003.09.002, 14572541
-
Martinez-Antonio A, Collado-Vides J. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol 2003, 6:482-489. 10.1016/j.mib.2003.09.002, 14572541.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 482-489
-
-
Martinez-Antonio, A.1
Collado-Vides, J.2
-
28
-
-
58949097886
-
Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
-
10.1099/mic.0.2008/022772-0, 19047729
-
Maddocks SE, Oyston PC. Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 2008, 154:3609-3623. 10.1099/mic.0.2008/022772-0, 19047729.
-
(2008)
Microbiology
, vol.154
, pp. 3609-3623
-
-
Maddocks, S.E.1
Oyston, P.C.2
-
29
-
-
66849113516
-
LuxR-family 'solos': bachelor sensors/regulators of signalling molecules
-
Subramoni S, Venturi V. LuxR-family 'solos': bachelor sensors/regulators of signalling molecules. Microbiology 2009, 155(Pt 5):1377-1385.
-
(2009)
Microbiology
, vol.155
, Issue.PART 5
, pp. 1377-1385
-
-
Subramoni, S.1
Venturi, V.2
-
30
-
-
0036400593
-
Histidine protein kinases: key signal transducers outside the animal kingdom
-
REVIEWS3013
-
Wolanin PM, Thomason PA, Stock JB. Histidine protein kinases: key signal transducers outside the animal kingdom. Genome Biol 2002, 3(10). REVIEWS3013.
-
(2002)
Genome Biol
, vol.3
, Issue.10
-
-
Wolanin, P.M.1
Thomason, P.A.2
Stock, J.B.3
-
31
-
-
33646236072
-
Cross-talk towards the response regulator NtrC controlling nitrogen metabolism in Rhodobacter capsulatus
-
10.1111/j.1574-6968.2006.00228.x, 16640581
-
Drepper T, Wiethaus J, Giaourakis D, Gross S, Schubert B, Vogt M, Wiencek Y, McEwan AG, Masepohl B. Cross-talk towards the response regulator NtrC controlling nitrogen metabolism in Rhodobacter capsulatus. FEMS Microbiol Lett 2006, 258:250-256. 10.1111/j.1574-6968.2006.00228.x, 16640581.
-
(2006)
FEMS Microbiol Lett
, vol.258
, pp. 250-256
-
-
Drepper, T.1
Wiethaus, J.2
Giaourakis, D.3
Gross, S.4
Schubert, B.5
Vogt, M.6
Wiencek, Y.7
McEwan, A.G.8
Masepohl, B.9
-
32
-
-
84864832413
-
CheA-receptor interaction sites in bacterial chemotaxis
-
10.1016/j.jmb.2012.05.023, 3418421, 22659323
-
Wang X, Vu A, Lee K, Dahlquist FW. CheA-receptor interaction sites in bacterial chemotaxis. J Mol Biol 2012, 422:282-290. 10.1016/j.jmb.2012.05.023, 3418421, 22659323.
-
(2012)
J Mol Biol
, vol.422
, pp. 282-290
-
-
Wang, X.1
Vu, A.2
Lee, K.3
Dahlquist, F.W.4
-
33
-
-
42149150462
-
The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis
-
10.1111/j.1574-6976.2008.00101.x, 18248418
-
Lamarche MG, Wanner BL, Crepin S, Harel J. The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis. FEMS Microbiol Rev 2008, 32:461-473. 10.1111/j.1574-6976.2008.00101.x, 18248418.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 461-473
-
-
Lamarche, M.G.1
Wanner, B.L.2
Crepin, S.3
Harel, J.4
-
34
-
-
0242524371
-
Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus
-
10.1146/annurev.micro.57.030502.091006, 14527278
-
Ausmees N, Jacobs-Wagner C. Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus. Annu Rev Microbiol 2003, 57:225-247. 10.1146/annurev.micro.57.030502.091006, 14527278.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 225-247
-
-
Ausmees, N.1
Jacobs-Wagner, C.2
-
35
-
-
0037122935
-
C4-dicarboxylate carriers and sensors in bacteria
-
10.1016/S0005-2728(01)00233-X, 11803016
-
Janausch IG, Zientz E, Tran QH, Kroger A, Unden G. C4-dicarboxylate carriers and sensors in bacteria. Biochim Biophys Acta 2002, 1553:39-56. 10.1016/S0005-2728(01)00233-X, 11803016.
-
(2002)
Biochim Biophys Acta
, vol.1553
, pp. 39-56
-
-
Janausch, I.G.1
Zientz, E.2
Tran, Q.H.3
Kroger, A.4
Unden, G.5
-
36
-
-
70049112105
-
The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC)
-
10.1371/journal.ppat.1000553, 2726761, 19696934
-
Hughes DT, Clarke MB, Yamamoto K, Rasko DA, Sperandio V. The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC). PLoS Pathog 2009, 5:e1000553. 10.1371/journal.ppat.1000553, 2726761, 19696934.
-
(2009)
PLoS Pathog
, vol.5
-
-
Hughes, D.T.1
Clarke, M.B.2
Yamamoto, K.3
Rasko, D.A.4
Sperandio, V.5
-
37
-
-
0033523121
-
Autophosphorylation, phosphotransfer, and DNA-binding properties of the RegB/RegA two-component regulatory system in Rhodobacter capsulatus
-
10.1074/jbc.274.23.16343, 10347192
-
Bird TH, Du S, Bauer CE. Autophosphorylation, phosphotransfer, and DNA-binding properties of the RegB/RegA two-component regulatory system in Rhodobacter capsulatus. J Biol Chem 1999, 274:16343-16348. 10.1074/jbc.274.23.16343, 10347192.
-
(1999)
J Biol Chem
, vol.274
, pp. 16343-16348
-
-
Bird, T.H.1
Du, S.2
Bauer, C.E.3
-
38
-
-
0034704146
-
K + and ionic strength directly influence the autophosphorylation activity of the putative turgor sensor KdpD of Escherichia coli
-
10.1074/jbc.M008917200, 11016946
-
Jung K, Veen M, Altendorf K. K + and ionic strength directly influence the autophosphorylation activity of the putative turgor sensor KdpD of Escherichia coli. J Biol Chem 2000, 275:40142-40147. 10.1074/jbc.M008917200, 11016946.
-
(2000)
J Biol Chem
, vol.275
, pp. 40142-40147
-
-
Jung, K.1
Veen, M.2
Altendorf, K.3
-
39
-
-
0029941952
-
An unorthodox sensor protein (TorS) mediates the induction of the tor structural genes in response to trimethylamine N-oxide in Escherichia coli
-
10.1111/j.1365-2958.1996.tb02648.x, 8809780
-
Jourlin C, Bengrine A, Chippaux M, Mejean V. An unorthodox sensor protein (TorS) mediates the induction of the tor structural genes in response to trimethylamine N-oxide in Escherichia coli. Mol Microbiol 1996, 20:1297-1306. 10.1111/j.1365-2958.1996.tb02648.x, 8809780.
-
(1996)
Mol Microbiol
, vol.20
, pp. 1297-1306
-
-
Jourlin, C.1
Bengrine, A.2
Chippaux, M.3
Mejean, V.4
-
40
-
-
31144471322
-
Bacterial stress responses: what doesn't kill them can make then stronger
-
10.1371/journal.pbio.0040023, 1326283, 16535775
-
Boor KJ. Bacterial stress responses: what doesn't kill them can make then stronger. PLoS Biol 2006, 4:e23. 10.1371/journal.pbio.0040023, 1326283, 16535775.
-
(2006)
PLoS Biol
, vol.4
-
-
Boor, K.J.1
-
41
-
-
58149518390
-
The bacterial LexA transcriptional repressor
-
10.1007/s00018-008-8378-6, 18726173
-
Butala M, Zgur-Bertok D, Busby SJ. The bacterial LexA transcriptional repressor. Cell Mol Life Sci 2009, 66:82-93. 10.1007/s00018-008-8378-6, 18726173.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 82-93
-
-
Butala, M.1
Zgur-Bertok, D.2
Busby, S.J.3
-
42
-
-
58149142958
-
The stringent response and cell cycle arrest in Escherichia coli
-
10.1371/journal.pgen.1000300, 2586660, 19079575
-
Ferullo DJ, Lovett ST. The stringent response and cell cycle arrest in Escherichia coli. PLoS Genet 2008, 4:e1000300. 10.1371/journal.pgen.1000300, 2586660, 19079575.
-
(2008)
PLoS Genet
, vol.4
-
-
Ferullo, D.J.1
Lovett, S.T.2
-
43
-
-
0035807805
-
RelE, a global inhibitor of translation, is activated during nutritional stress
-
10.1073/pnas.251327898, 64681, 11717402
-
Christensen SK, Mikkelsen M, Pedersen K, Gerdes K. RelE, a global inhibitor of translation, is activated during nutritional stress. Proc Natl Acad Sci U S A 2001, 98:14328-14333. 10.1073/pnas.251327898, 64681, 11717402.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 14328-14333
-
-
Christensen, S.K.1
Mikkelsen, M.2
Pedersen, K.3
Gerdes, K.4
-
44
-
-
0034982311
-
Microbial molecular chaperones
-
Lund PA. Microbial molecular chaperones. Adv Microb Physiol 2001, 44:93-140.
-
(2001)
Adv Microb Physiol
, vol.44
, pp. 93-140
-
-
Lund, P.A.1
-
45
-
-
84879014020
-
Cycling of RNAs on Hfq
-
10.4161/rna.24044, 3710369, 23466677
-
Wagner EG. Cycling of RNAs on Hfq. RNA Biol 2013, 10:619-626. 10.4161/rna.24044, 3710369, 23466677.
-
(2013)
RNA Biol
, vol.10
, pp. 619-626
-
-
Wagner, E.G.1
-
46
-
-
33746660802
-
Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms
-
10.1186/1471-2164-7-156, 1525184, 16780600
-
Chen B, Zhong D, Monteiro A. Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms. BMC Genomics 2006, 7:156. 10.1186/1471-2164-7-156, 1525184, 16780600.
-
(2006)
BMC Genomics
, vol.7
, pp. 156
-
-
Chen, B.1
Zhong, D.2
Monteiro, A.3
-
47
-
-
34047093352
-
Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus
-
10.1186/1471-2180-7-17, 1839093, 17352799
-
Martins-Pinheiro M, Marques RC, Menck CF. Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus. BMC Microbiol 2007, 7:17. 10.1186/1471-2180-7-17, 1839093, 17352799.
-
(2007)
BMC Microbiol
, vol.7
, pp. 17
-
-
Martins-Pinheiro, M.1
Marques, R.C.2
Menck, C.F.3
-
48
-
-
84871340015
-
Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB
-
Wigley DB. Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB. Nat Rev Microbiol 2013, 11:9-13.
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 9-13
-
-
Wigley, D.B.1
-
49
-
-
0036842202
-
Shining a light on photolyases
-
10.1038/ng1102-338, 12410227
-
Menck CF. Shining a light on photolyases. Nat Genet 2002, 32:338-339. 10.1038/ng1102-338, 12410227.
-
(2002)
Nat Genet
, vol.32
, pp. 338-339
-
-
Menck, C.F.1
-
50
-
-
0035979231
-
The subunit structure and catalytic mechanism of the Bacillus subtilis DNA repair enzyme spore photoproduct lyase
-
10.1073/pnas.161278998, 55369, 11470912
-
Rebeil R, Nicholson WL. The subunit structure and catalytic mechanism of the Bacillus subtilis DNA repair enzyme spore photoproduct lyase. Proc Natl Acad Sci U S A 2001, 98:9038-9043. 10.1073/pnas.161278998, 55369, 11470912.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 9038-9043
-
-
Rebeil, R.1
Nicholson, W.L.2
-
51
-
-
0037068433
-
AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
-
10.1038/nature01048, 12226668
-
Falnes PO, Johansen RF, Seeberg E. AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli. Nature 2002, 419:178-182. 10.1038/nature01048, 12226668.
-
(2002)
Nature
, vol.419
, pp. 178-182
-
-
Falnes, P.O.1
Johansen, R.F.2
Seeberg, E.3
-
52
-
-
64349112326
-
Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more
-
10.1111/j.1574-6976.2008.00159.x, 2941194, 19175412
-
Marinus MG, Casadesus J. Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more. FEMS Microbiol Rev 2009, 33:488-503. 10.1111/j.1574-6976.2008.00159.x, 2941194, 19175412.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 488-503
-
-
Marinus, M.G.1
Casadesus, J.2
-
53
-
-
71849115781
-
Epigenetic regulation of the bacterial cell cycle
-
10.1016/j.mib.2009.08.005, 19783470
-
Collier J. Epigenetic regulation of the bacterial cell cycle. Curr Opin Microbiol 2009, 12:722-729. 10.1016/j.mib.2009.08.005, 19783470.
-
(2009)
Curr Opin Microbiol
, vol.12
, pp. 722-729
-
-
Collier, J.1
-
54
-
-
84858414949
-
Novel non-specific DNA adenine methyltransferases
-
10.1093/nar/gkr1039, 3299994, 22102579
-
Drozdz M, Piekarowicz A, Bujnicki JM, Radlinska M. Novel non-specific DNA adenine methyltransferases. Nucleic Acids Res 2012, 40(5):2119-2130. 10.1093/nar/gkr1039, 3299994, 22102579.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.5
, pp. 2119-2130
-
-
Drozdz, M.1
Piekarowicz, A.2
Bujnicki, J.M.3
Radlinska, M.4
-
55
-
-
0031296919
-
Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid
-
Bartosik D, Bialkowska A, Baj J, Wlodarczyk M. Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid. Acta Microbiol Pol 1997, 46(4):387-392.
-
(1997)
Acta Microbiol Pol
, vol.46
, Issue.4
, pp. 387-392
-
-
Bartosik, D.1
Bialkowska, A.2
Baj, J.3
Wlodarczyk, M.4
-
56
-
-
0141532943
-
DNA repair by bacterial AlkB proteins
-
10.1016/S0923-2508(03)00150-5, 14527653
-
Falnes PO, Rognes T. DNA repair by bacterial AlkB proteins. Res Microbiol 2003, 154:531-538. 10.1016/S0923-2508(03)00150-5, 14527653.
-
(2003)
Res Microbiol
, vol.154
, pp. 531-538
-
-
Falnes, P.O.1
Rognes, T.2
-
57
-
-
0043210397
-
Identification of the CysB-regulated gene, hslJ, related to the Escherichia coli novobiocin resistance phenotype
-
10.1016/S0378-1097(03)00441-5, 12892888
-
Lilic M, Jovanovic M, Jovanovic G, Savic DJ. Identification of the CysB-regulated gene, hslJ, related to the Escherichia coli novobiocin resistance phenotype. FEMS Microbiol Lett 2003, 224:239-246. 10.1016/S0378-1097(03)00441-5, 12892888.
-
(2003)
FEMS Microbiol Lett
, vol.224
, pp. 239-246
-
-
Lilic, M.1
Jovanovic, M.2
Jovanovic, G.3
Savic, D.J.4
-
58
-
-
39749184089
-
Ammonia-induced formation of an AmtB-GlnK complex is not sufficient for nitrogenase regulation in the photosynthetic bacterium Rhodobacter capsulatus
-
10.1128/JB.01643-07, 2258696, 18156251
-
Tremblay PL, Hallenbeck PC. Ammonia-induced formation of an AmtB-GlnK complex is not sufficient for nitrogenase regulation in the photosynthetic bacterium Rhodobacter capsulatus. J Bacteriol 2008, 190:1588-1594. 10.1128/JB.01643-07, 2258696, 18156251.
-
(2008)
J Bacteriol
, vol.190
, pp. 1588-1594
-
-
Tremblay, P.L.1
Hallenbeck, P.C.2
-
59
-
-
84865955876
-
Insights into the 1.59-Mbp largest plasmid of Azospirillum brasilense CBG497
-
10.1007/s00203-012-0805-2, 22481309
-
Acosta-Cruz E, Wisniewski-Dye F, Rouy Z, Barbe V, Valdes M, Mavingui P. Insights into the 1.59-Mbp largest plasmid of Azospirillum brasilense CBG497. Arch Microbiol 2012, 194:725-736. 10.1007/s00203-012-0805-2, 22481309.
-
(2012)
Arch Microbiol
, vol.194
, pp. 725-736
-
-
Acosta-Cruz, E.1
Wisniewski-Dye, F.2
Rouy, Z.3
Barbe, V.4
Valdes, M.5
Mavingui, P.6
-
60
-
-
77950802816
-
Introducing the bacterial 'chromid': not a chromosome, not a plasmid
-
10.1016/j.tim.2009.12.010, 20080407
-
Harrison PW, Lower RP, Kim NK, Young JP. Introducing the bacterial 'chromid': not a chromosome, not a plasmid. Trends Microbiol 2010, 18:141-148. 10.1016/j.tim.2009.12.010, 20080407.
-
(2010)
Trends Microbiol
, vol.18
, pp. 141-148
-
-
Harrison, P.W.1
Lower, R.P.2
Kim, N.K.3
Young, J.P.4
-
61
-
-
79953290196
-
Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum
-
10.1186/1471-2180-11-66, 3082293, 21463532
-
Villasenor T, Brom S, Davalos A, Lozano L, Romero D, Los Santos AG. Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum. BMC Microbiol 2011, 11:66. 10.1186/1471-2180-11-66, 3082293, 21463532.
-
(2011)
BMC Microbiol
, vol.11
, pp. 66
-
-
Villasenor, T.1
Brom, S.2
Davalos, A.3
Lozano, L.4
Romero, D.5
Los Santos, A.G.6
-
62
-
-
79952382560
-
Plasmids with a chromosome-like role in rhizobia
-
10.1128/JB.01184-10, 3067620, 21217003
-
Landeta C, Davalos A, Cevallos MA, Geiger O, Brom S, Romero D. Plasmids with a chromosome-like role in rhizobia. J Bacteriol 2011, 193:1317-1326. 10.1128/JB.01184-10, 3067620, 21217003.
-
(2011)
J Bacteriol
, vol.193
, pp. 1317-1326
-
-
Landeta, C.1
Davalos, A.2
Cevallos, M.A.3
Geiger, O.4
Brom, S.5
Romero, D.6
-
63
-
-
8844259469
-
Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems
-
10.1016/j.bbamcr.2004.02.013, 15546668
-
Christie PJ. Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems. Biochim Biophys Acta 2004, 1694:219-234. 10.1016/j.bbamcr.2004.02.013, 15546668.
-
(2004)
Biochim Biophys Acta
, vol.1694
, pp. 219-234
-
-
Christie, P.J.1
-
64
-
-
79957529450
-
How proteins form disulfide bonds
-
10.1089/ars.2010.3575, 20849374
-
Depuydt M, Messens J, Collet JF. How proteins form disulfide bonds. Antioxid Redox Signal 2011, 15:49-66. 10.1089/ars.2010.3575, 20849374.
-
(2011)
Antioxid Redox Signal
, vol.15
, pp. 49-66
-
-
Depuydt, M.1
Messens, J.2
Collet, J.F.3
-
65
-
-
33744801394
-
Bacteriophages and pathogenicity: more than just providing a toxin?
-
10.1016/j.micinf.2005.12.013, 16698301
-
Tinsley CR, Bille E, Nassif X. Bacteriophages and pathogenicity: more than just providing a toxin?. Microbes Infect 2006, 8:1365-1371. 10.1016/j.micinf.2005.12.013, 16698301.
-
(2006)
Microbes Infect
, vol.8
, pp. 1365-1371
-
-
Tinsley, C.R.1
Bille, E.2
Nassif, X.3
-
66
-
-
33846659065
-
Importance of widespread gene transfer agent genes in alpha-proteobacteria
-
10.1016/j.tim.2006.12.001, 17184993
-
Lang AS, Beatty JT. Importance of widespread gene transfer agent genes in alpha-proteobacteria. Trends Microbiol 2007, 15:54-62. 10.1016/j.tim.2006.12.001, 17184993.
-
(2007)
Trends Microbiol
, vol.15
, pp. 54-62
-
-
Lang, A.S.1
Beatty, J.T.2
-
67
-
-
0028214048
-
Translational control in production of transposase and in transposition of insertion sequence IS3
-
10.1006/jmbi.1994.1097, 8107082
-
Sekine Y, Eisaki N, Ohtsubo E. Translational control in production of transposase and in transposition of insertion sequence IS3. J Mol Biol 1994, 235(5):1406-1420. 10.1006/jmbi.1994.1097, 8107082.
-
(1994)
J Mol Biol
, vol.235
, Issue.5
, pp. 1406-1420
-
-
Sekine, Y.1
Eisaki, N.2
Ohtsubo, E.3
-
68
-
-
84876520217
-
Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti
-
10.1093/gbe/evt027, 3622305, 23431003
-
Galardini M, Pini F, Bazzicalupo M, Biondi EG, Mengoni A. Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti. Genome Biol Evol 2013, 5:542-558. 10.1093/gbe/evt027, 3622305, 23431003.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 542-558
-
-
Galardini, M.1
Pini, F.2
Bazzicalupo, M.3
Biondi, E.G.4
Mengoni, A.5
-
69
-
-
84876675019
-
Phenotype profiling of Rhizobium leguminosarum bv. trifolii clover nodule isolates reveal their both versatile and specialized metabolic capabilities
-
10.1007/s00203-013-0874-x, 3597991, 23417392
-
Mazur A, Stasiak G, Wielbo J, Koper P, Kubik-Komar A, Skorupska A. Phenotype profiling of Rhizobium leguminosarum bv. trifolii clover nodule isolates reveal their both versatile and specialized metabolic capabilities. Arch Microbiol 2013, 195:255-267. 10.1007/s00203-013-0874-x, 3597991, 23417392.
-
(2013)
Arch Microbiol
, vol.195
, pp. 255-267
-
-
Mazur, A.1
Stasiak, G.2
Wielbo, J.3
Koper, P.4
Kubik-Komar, A.5
Skorupska, A.6
-
70
-
-
77954617676
-
Why genes evolve faster on secondary chromosomes in bacteria
-
10.1371/journal.pcbi.1000732, 2848543, 20369015
-
Cooper VS, Vohr SH, Wrocklage SC, Hatcher PJ. Why genes evolve faster on secondary chromosomes in bacteria. PLoS Comput Biol 2010, 6:e1000732. 10.1371/journal.pcbi.1000732, 2848543, 20369015.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Cooper, V.S.1
Vohr, S.H.2
Wrocklage, S.C.3
Hatcher, P.J.4
-
71
-
-
84876521834
-
Evolutionary effects of translocations in bacterial genomes
-
10.1093/gbe/evs099, 3542574, 23160175
-
Morrow JD, Cooper VS. Evolutionary effects of translocations in bacterial genomes. Genome Biol Evol 2012, 4:1256-1262. 10.1093/gbe/evs099, 3542574, 23160175.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 1256-1262
-
-
Morrow, J.D.1
Cooper, V.S.2
-
72
-
-
79957546504
-
Intragenomic diversity of Rhizobium leguminosarum bv. trifolii clover nodule isolates
-
10.1186/1471-2180-11-123, 3123555, 21619713
-
Mazur A, Stasiak G, Wielbo J, Kubik-Komar A, Marek-Kozaczuk M, Skorupska A. Intragenomic diversity of Rhizobium leguminosarum bv. trifolii clover nodule isolates. BMC Microbiol 2011, 11:123. 10.1186/1471-2180-11-123, 3123555, 21619713.
-
(2011)
BMC Microbiol
, vol.11
, pp. 123
-
-
Mazur, A.1
Stasiak, G.2
Wielbo, J.3
Kubik-Komar, A.4
Marek-Kozaczuk, M.5
Skorupska, A.6
-
73
-
-
84857493477
-
Genome engineering in Vibrio cholerae: a feasible approach to address biological issues
-
10.1371/journal.pgen.1002472, 3257285, 22253612
-
Val ME, Skovgaard O, Ducos-Galand M, Bland MJ, Mazel D. Genome engineering in Vibrio cholerae: a feasible approach to address biological issues. PLoS Genet 2012, 8(1):e1002472. 10.1371/journal.pgen.1002472, 3257285, 22253612.
-
(2012)
PLoS Genet
, vol.8
, Issue.1
-
-
Val, M.E.1
Skovgaard, O.2
Ducos-Galand, M.3
Bland, M.J.4
Mazel, D.5
-
74
-
-
84876672324
-
Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade
-
10.1007/s00253-013-4746-8, 23435940
-
Petersen J, Frank O, Goker M, Pradella S. Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol 2013, 97:2805-2815. 10.1007/s00253-013-4746-8, 23435940.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 2805-2815
-
-
Petersen, J.1
Frank, O.2
Goker, M.3
Pradella, S.4
-
76
-
-
0021191671
-
Rhizobium phaseoli symbiotic mutants with transposon Tn5 insertions
-
215392, 6325385
-
Noel KD, Sanchez A, Fernandez L, Leemans J, Cevallos MA. Rhizobium phaseoli symbiotic mutants with transposon Tn5 insertions. J Bacteriol 1984, 158(1):148-155. 215392, 6325385.
-
(1984)
J Bacteriol
, vol.158
, Issue.1
, pp. 148-155
-
-
Noel, K.D.1
Sanchez, A.2
Fernandez, L.3
Leemans, J.4
Cevallos, M.A.5
-
77
-
-
0017403241
-
Heterotrophic growth of Thiobacillus A2 on sugars and organic acids
-
10.1007/BF00492033, 879963
-
Wood AP, Kelly DP. Heterotrophic growth of Thiobacillus A2 on sugars and organic acids. Arch Microbiol 1977, 113(3):257-264. 10.1007/BF00492033, 879963.
-
(1977)
Arch Microbiol
, vol.113
, Issue.3
, pp. 257-264
-
-
Wood, A.P.1
Kelly, D.P.2
-
78
-
-
0002480530
-
Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development
-
Wheatcroft R, McRae GD, Miller RW. Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development. Mol Plant Microbe Interact 1990, 3:9-17.
-
(1990)
Mol Plant Microbe Interact
, vol.3
, pp. 9-17
-
-
Wheatcroft, R.1
McRae, G.D.2
Miller, R.W.3
-
79
-
-
0002846133
-
An improved method for transformation of E. coli with ColE1 derived plasmids
-
Amsterdam: Elsevier/North-Holland, Boyer HB, Nicosia S
-
Kushner SR. An improved method for transformation of E. coli with ColE1 derived plasmids. Genetic Engineering 1978, 17-23. Amsterdam: Elsevier/North-Holland, Boyer HB, Nicosia S.
-
(1978)
Genetic Engineering
, pp. 17-23
-
-
Kushner, S.R.1
-
80
-
-
0035688331
-
Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1
-
10.1128/JB.183.21.6234-6243.2001, 100104, 11591666
-
Bartosik D, Szymanik M, Wysocka E. Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1. J Bacteriol 2001, 183(21):6234-6243. 10.1128/JB.183.21.6234-6243.2001, 100104, 11591666.
-
(2001)
J Bacteriol
, vol.183
, Issue.21
, pp. 6234-6243
-
-
Bartosik, D.1
Szymanik, M.2
Wysocka, E.3
-
81
-
-
62449323971
-
Basic phage electron microscopy
-
10.1007/978-1-60327-164-6_12, 19066816
-
Ackermann HW. Basic phage electron microscopy. Methods Mol Biol 2009, 501:113-126. 10.1007/978-1-60327-164-6_12, 19066816.
-
(2009)
Methods Mol Biol
, vol.501
, pp. 113-126
-
-
Ackermann, H.W.1
-
82
-
-
0037561991
-
GenDB - an open source genome annotation system for prokaryote genomes
-
10.1093/nar/gkg312, 153740, 12682369
-
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, et al. GenDB - an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 2003, 31:2187-2195. 10.1093/nar/gkg312, 153740, 12682369.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2187-2195
-
-
Meyer, F.1
Goesmann, A.2
McHardy, A.C.3
Bartels, D.4
Bekel, T.5
Clausen, J.6
Kalinowski, J.7
Linke, B.8
Rupp, O.9
Giegerich, R.10
-
83
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
84
-
-
0345531106
-
Enzyme-specific profiles for genome annotation: PRIAM
-
10.1093/nar/gkg847, 275543, 14602924
-
Claudel-Renard C, Chevalet C, Faraut T, Kahn D. Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Res 2003, 31:6633-6639. 10.1093/nar/gkg847, 275543, 14602924.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6633-6639
-
-
Claudel-Renard, C.1
Chevalet, C.2
Faraut, T.3
Kahn, D.4
-
85
-
-
0030854739
-
TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
10.1093/nar/25.5.0955, 146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 10.1093/nar/25.5.0955, 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
86
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
10.1186/1471-2105-4-41, 222959, 12969510
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003, 4:41. 10.1186/1471-2105-4-41, 222959, 12969510.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
-
87
-
-
33644873699
-
ISfinder: the reference centre for bacterial insertion sequences
-
10.1093/nar/gkj014, 1347377, 16381877
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res 2006, 34:D32-D36. 10.1093/nar/gkj014, 1347377, 16381877.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
88
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
10.1093/bioinformatics/btn529, 2606163,2606163, 18845581
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, Parkhill J, Rajandream MA. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 2008, 24:2672-2676. 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581.
-
(2008)
Bioinformatics
, vol.24
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
Parkhill, J.7
Rajandream, M.A.8
-
89
-
-
67649159262
-
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
-
10.1186/1471-2105-10-154, 2696450, 19457249
-
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 2009, 10:154. 10.1186/1471-2105-10-154, 2696450, 19457249.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 154
-
-
Blom, J.1
Albaum, S.P.2
Doppmeier, D.3
Puhler, A.4
Vorholter, F.J.5
Zakrzewski, M.6
Goesmann, A.7
-
90
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
91
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
10.1080/10635150701472164, 17654362
-
Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56(4):564-577. 10.1080/10635150701472164, 17654362.
-
(2007)
Syst Biol
, vol.56
, Issue.4
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
92
-
-
0000122573
-
PHYLIP - phylogeny inference package (version 3.2)
-
Felsenstein J. PHYLIP - phylogeny inference package (version 3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
93
-
-
77949991970
-
Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0
-
10.1186/1756-0500-3-41, 2844394, 20178631
-
Mahadevan P, Seto D. Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0. BMC Res Notes 2010, 3:41. 10.1186/1756-0500-3-41, 2844394, 20178631.
-
(2010)
BMC Res Notes
, vol.3
, pp. 41
-
-
Mahadevan, P.1
Seto, D.2
|