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Volumn 15, Issue 1, 2014, Pages

Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids

Author keywords

Bacteriophage; Chromid; Genome; Mobile genetic element; Paracoccus aminophilus JCM 7686; Plasmid

Indexed keywords

TRANSPOSON;

EID: 84893652508     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-124     Document Type: Article
Times cited : (44)

References (93)
  • 1
    • 0031793773 scopus 로고    scopus 로고
    • Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility
    • 98939, 9841665
    • Baker SC, Ferguson SJ, Ludwig B, Page MD, Richter OM, van Spanning RJ. Molecular genetics of the genus Paracoccus: metabolically versatile bacteria with bioenergetic flexibility. Microbiol Mol Biol Rev 1998, 62(4):1046-1078. 98939, 9841665.
    • (1998) Microbiol Mol Biol Rev , vol.62 , Issue.4 , pp. 1046-1078
    • Baker, S.C.1    Ferguson, S.J.2    Ludwig, B.3    Page, M.D.4    Richter, O.M.5    van Spanning, R.J.6
  • 2
    • 0029076627 scopus 로고
    • Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus
    • 10.1099/13500872-141-6-1469, 7545513
    • Katayama Y, Hiraishi A, Kuraishi H. Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 1995, 141:1469-1477. 10.1099/13500872-141-6-1469, 7545513.
    • (1995) Microbiology , vol.141 , pp. 1469-1477
    • Katayama, Y.1    Hiraishi, A.2    Kuraishi, H.3
  • 3
    • 33750031030 scopus 로고    scopus 로고
    • Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections
    • 10.1099/ijs.0.64401-0, 17012585
    • Kelly DP, Euzeby JP, Goodhew CF, Wood AP. Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections. Int J Syst Evol Microbiol 2006, 56:2495-2500. 10.1099/ijs.0.64401-0, 17012585.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 2495-2500
    • Kelly, D.P.1    Euzeby, J.P.2    Goodhew, C.F.3    Wood, A.P.4
  • 4
    • 33646183453 scopus 로고    scopus 로고
    • Nitrate-dependent [Fe(II)EDTA]2- oxidation by Paracoccus ferrooxidans sp. nov., isolated from a denitrifying bioreactor
    • 10.1016/j.syapm.2005.08.001, 16682296
    • Kumaraswamy R, Sjollema K, Kuenen G, van Loosdrecht M, Muyzer G. Nitrate-dependent [Fe(II)EDTA]2- oxidation by Paracoccus ferrooxidans sp. nov., isolated from a denitrifying bioreactor. Syst Appl Microbiol 2006, 29:276-286. 10.1016/j.syapm.2005.08.001, 16682296.
    • (2006) Syst Appl Microbiol , vol.29 , pp. 276-286
    • Kumaraswamy, R.1    Sjollema, K.2    Kuenen, G.3    van Loosdrecht, M.4    Muyzer, G.5
  • 5
    • 0031824087 scopus 로고    scopus 로고
    • Paracoccus methylutens sp. nov. - a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane
    • Doronina NV, Trotsenko YA, Krausova VI, Suzina NE. Paracoccus methylutens sp. nov. - a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane. Syst Appl Microbiol 1998, 21:230-236.
    • (1998) Syst Appl Microbiol , vol.21 , pp. 230-236
    • Doronina, N.V.1    Trotsenko, Y.A.2    Krausova, V.I.3    Suzina, N.E.4
  • 6
    • 84876863116 scopus 로고    scopus 로고
    • Tenax TA extraction to understand the rate-limiting factors in methyl-beta-cyclodextrin-enhanced bioremediation of PAH-contaminated soil
    • 10.1007/s10532-012-9593-2, 23001628
    • Sun M, Luo Y, Teng Y, Christie P, Jia Z, Li Z. Tenax TA extraction to understand the rate-limiting factors in methyl-beta-cyclodextrin-enhanced bioremediation of PAH-contaminated soil. Biodegradation 2013, 24:365-375. 10.1007/s10532-012-9593-2, 23001628.
    • (2013) Biodegradation , vol.24 , pp. 365-375
    • Sun, M.1    Luo, Y.2    Teng, Y.3    Christie, P.4    Jia, Z.5    Li, Z.6
  • 7
    • 79952804546 scopus 로고    scopus 로고
    • Genome sequence of Paracoccus sp. Strain TRP, a chlorpyrifos biodegrader
    • 10.1128/JB.00014-11, 3067656, 21257769
    • Li K, Wang S, Shi Y, Qu J, Zhai Y, Xu L, Xu Y, Song J, Liu L, Rahman MA, et al. Genome sequence of Paracoccus sp. Strain TRP, a chlorpyrifos biodegrader. J Bacteriol 2011, 193(7):1786-1787. 10.1128/JB.00014-11, 3067656, 21257769.
    • (2011) J Bacteriol , vol.193 , Issue.7 , pp. 1786-1787
    • Li, K.1    Wang, S.2    Shi, Y.3    Qu, J.4    Zhai, Y.5    Xu, L.6    Xu, Y.7    Song, J.8    Liu, L.9    Rahman, M.A.10
  • 8
    • 80053609595 scopus 로고    scopus 로고
    • Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide
    • 10.1128/JB.05667-11, 3187436, 21914898
    • Siddavattam D, Karegoudar TB, Mudde SK, Kumar N, Baddam R, Avasthi TS, Ahmed N. Genome of a novel isolate of Paracoccus denitrificans capable of degrading N,N-dimethylformamide. J Bacteriol 2011, 193(19):5598-5599. 10.1128/JB.05667-11, 3187436, 21914898.
    • (2011) J Bacteriol , vol.193 , Issue.19 , pp. 5598-5599
    • Siddavattam, D.1    Karegoudar, T.B.2    Mudde, S.K.3    Kumar, N.4    Baddam, R.5    Avasthi, T.S.6    Ahmed, N.7
  • 9
    • 0034491242 scopus 로고    scopus 로고
    • Plasmid occurrence and diversity in the genus Paracoccus
    • Baj J, Piechucka E, Bartosik D, Wlodarczyk M. Plasmid occurrence and diversity in the genus Paracoccus. Acta Microbiol Pol 2000, 49(3-4):265-270.
    • (2000) Acta Microbiol Pol , vol.49 , Issue.3-4 , pp. 265-270
    • Baj, J.1    Piechucka, E.2    Bartosik, D.3    Wlodarczyk, M.4
  • 10
    • 42549100016 scopus 로고    scopus 로고
    • Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12
    • 10.1128/JB.01878-07, 2347374, 18296518
    • Bartosik D, Putyrski M, Dziewit L, Malewska E, Szymanik M, Jagiello E, Lukasik J, Baj J. Transposable modules generated by a single copy of insertion sequence ISPme1 and their influence on structure and evolution of natural plasmids of Paracoccus methylutens DM12. J Bacteriol 2008, 190(9):3306-3313. 10.1128/JB.01878-07, 2347374, 18296518.
    • (2008) J Bacteriol , vol.190 , Issue.9 , pp. 3306-3313
    • Bartosik, D.1    Putyrski, M.2    Dziewit, L.3    Malewska, E.4    Szymanik, M.5    Jagiello, E.6    Lukasik, J.7    Baj, J.8
  • 11
    • 0036739786 scopus 로고    scopus 로고
    • Molecular characterization of functional modules of plasmid pWKS1 of Paracoccus pantotrophus DSM 11072
    • Bartosik D, Baj J, Sochacka M, Piechucka E, Wlodarczyk M. Molecular characterization of functional modules of plasmid pWKS1 of Paracoccus pantotrophus DSM 11072. Microbiology 2002, 148(Pt 9):2847-2856.
    • (2002) Microbiology , vol.148 , Issue.PART 9 , pp. 2847-2856
    • Bartosik, D.1    Baj, J.2    Sochacka, M.3    Piechucka, E.4    Wlodarczyk, M.5
  • 12
    • 0031766816 scopus 로고    scopus 로고
    • Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1
    • 10.1099/00221287-144-11-3149, 9846751
    • Bartosik D, Baj J, Wlodarczyk M. Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1. Microbiology 1998, 144:3149-3157. 10.1099/00221287-144-11-3149, 9846751.
    • (1998) Microbiology , vol.144 , pp. 3149-3157
    • Bartosik, D.1    Baj, J.2    Wlodarczyk, M.3
  • 13
    • 0034950005 scopus 로고    scopus 로고
    • Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus
    • 10.1006/plas.2000.1505, 11407917
    • Bartosik D, Witkowska M, Baj J, Wlodarczyk M. Characterization and sequence analysis of the replicator region of the novel plasmid pALC1 from Paracoccus alcaliphilus. Plasmid 2001, 45(3):222-226. 10.1006/plas.2000.1505, 11407917.
    • (2001) Plasmid , vol.45 , Issue.3 , pp. 222-226
    • Bartosik, D.1    Witkowska, M.2    Baj, J.3    Wlodarczyk, M.4
  • 14
    • 0036129689 scopus 로고    scopus 로고
    • Characterization of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits
    • Bartosik D, Baj J, Bartosik AA, Wlodarczyk M. Characterization of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits. Microbiology 2002, 148(Pt 3):871-881.
    • (2002) Microbiology , vol.148 , Issue.PART 3 , pp. 871-881
    • Bartosik, D.1    Baj, J.2    Bartosik, A.A.3    Wlodarczyk, M.4
  • 15
    • 0038039245 scopus 로고    scopus 로고
    • Identification and characterization of transposable elements of Paracoccus pantotrophus
    • 10.1128/JB.185.13.3753-3763.2003, 161580, 12813068
    • Bartosik D, Sochacka M, Baj J. Identification and characterization of transposable elements of Paracoccus pantotrophus. J Bacteriol 2003, 185(13):3753-3763. 10.1128/JB.185.13.3753-3763.2003, 161580, 12813068.
    • (2003) J Bacteriol , vol.185 , Issue.13 , pp. 3753-3763
    • Bartosik, D.1    Sochacka, M.2    Baj, J.3
  • 16
    • 2142800596 scopus 로고    scopus 로고
    • Identification and distribution of insertion sequences of Paracoccus solventivorans
    • 10.1128/AEM.69.12.7002-7008.2003, 310034, 14660342
    • Bartosik D, Szymanik M, Baj J. Identification and distribution of insertion sequences of Paracoccus solventivorans. Appl Environ Microbiol 2003, 69(12):7002-7008. 10.1128/AEM.69.12.7002-7008.2003, 310034, 14660342.
    • (2003) Appl Environ Microbiol , vol.69 , Issue.12 , pp. 7002-7008
    • Bartosik, D.1    Szymanik, M.2    Baj, J.3
  • 18
    • 33645535950 scopus 로고    scopus 로고
    • Identification of a transposable genomic island of Paracoccus pantotrophus DSM 11072 by its transposition to a novel entrapment vector pMMB2
    • Mikosa M, Sochacka-Pietal M, Baj J, Bartosik D. Identification of a transposable genomic island of Paracoccus pantotrophus DSM 11072 by its transposition to a novel entrapment vector pMMB2. Microbiology 2006, 152(Pt 4):1063-1073.
    • (2006) Microbiology , vol.152 , Issue.PART 4 , pp. 1063-1073
    • Mikosa, M.1    Sochacka-Pietal, M.2    Baj, J.3    Bartosik, D.4
  • 19
    • 60349100621 scopus 로고    scopus 로고
    • Identification of a mosaic transposable element of Paracoccus marcusii composed of insertion sequence ISPmar4 (ISAs1 family) and an IS1247a-driven transposable module (TMo)
    • 10.1111/j.1574-6968.2009.01495.x, 19187199
    • Szuplewska M, Bartosik D. Identification of a mosaic transposable element of Paracoccus marcusii composed of insertion sequence ISPmar4 (ISAs1 family) and an IS1247a-driven transposable module (TMo). FEMS Microbiol Lett 2009, 292(2):216-221. 10.1111/j.1574-6968.2009.01495.x, 19187199.
    • (2009) FEMS Microbiol Lett , vol.292 , Issue.2 , pp. 216-221
    • Szuplewska, M.1    Bartosik, D.2
  • 20
    • 0029147556 scopus 로고
    • Isolation and characterization of a novel insertion sequence element, IS1248, in Paracoccus denitrificans
    • 10.1006/plas.1995.1029, 7480167
    • van Spanning RJ, de Boer AP, Slotboom DJ, Reijnders WN, Stouthamer AH. Isolation and characterization of a novel insertion sequence element, IS1248, in Paracoccus denitrificans. Plasmid 1995, 34(1):11-21. 10.1006/plas.1995.1029, 7480167.
    • (1995) Plasmid , vol.34 , Issue.1 , pp. 11-21
    • van Spanning, R.J.1    de Boer, A.P.2    Slotboom, D.J.3    Reijnders, W.N.4    Stouthamer, A.H.5
  • 21
    • 0025358474 scopus 로고
    • Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N, N-dimethylformamide
    • 10.1099/00207713-40-3-287, 2397196
    • Urakami T, Araki H, Oyanagi H, Suzuki K, Komagata K. Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N, N-dimethylformamide. Int J Syst Bacteriol 1990, 40(3):287-291. 10.1099/00207713-40-3-287, 2397196.
    • (1990) Int J Syst Bacteriol , vol.40 , Issue.3 , pp. 287-291
    • Urakami, T.1    Araki, H.2    Oyanagi, H.3    Suzuki, K.4    Komagata, K.5
  • 22
    • 33947373975 scopus 로고    scopus 로고
    • The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2
    • 10.1128/JB.01610-06, 1855756, 17158670
    • Dziewit L, Jazurek M, Drewniak L, Baj J, Bartosik D. The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2. J Bacteriol 2007, 189(5):1983-1997. 10.1128/JB.01610-06, 1855756, 17158670.
    • (2007) J Bacteriol , vol.189 , Issue.5 , pp. 1983-1997
    • Dziewit, L.1    Jazurek, M.2    Drewniak, L.3    Baj, J.4    Bartosik, D.5
  • 23
    • 79959744352 scopus 로고    scopus 로고
    • DIY series of genetic cassettes useful in construction of versatile vectors specific for Alphaproteobacteria
    • 10.1016/j.mimet.2011.04.016, 21569803
    • Dziewit L, Adamczuk M, Szuplewska M, Bartosik D. DIY series of genetic cassettes useful in construction of versatile vectors specific for Alphaproteobacteria. J Microbiol Methods 2011, 86(2):166-174. 10.1016/j.mimet.2011.04.016, 21569803.
    • (2011) J Microbiol Methods , vol.86 , Issue.2 , pp. 166-174
    • Dziewit, L.1    Adamczuk, M.2    Szuplewska, M.3    Bartosik, D.4
  • 24
    • 80053546146 scopus 로고    scopus 로고
    • Functional characterization of the type II PamI restriction-modification system derived from plasmid pAMI7 of Paracoccus aminophilus JCM 7686
    • 10.1111/j.1574-6968.2011.02388.x, 22092764
    • Dziewit L, Kuczkowska K, Adamczuk M, Radlinska M, Bartosik D. Functional characterization of the type II PamI restriction-modification system derived from plasmid pAMI7 of Paracoccus aminophilus JCM 7686. FEMS Microbiol Lett 2011, 324(1):56-63. 10.1111/j.1574-6968.2011.02388.x, 22092764.
    • (2011) FEMS Microbiol Lett , vol.324 , Issue.1 , pp. 56-63
    • Dziewit, L.1    Kuczkowska, K.2    Adamczuk, M.3    Radlinska, M.4    Bartosik, D.5
  • 25
    • 77749245788 scopus 로고    scopus 로고
    • Plasmid pAMI2 of Paracoccus aminophilus JCM 7686 carries N, N-dimethylformamide degradation-related genes whose expression is activated by a LuxR family regulator
    • 10.1128/AEM.01926-09, 2837997, 20118371
    • Dziewit L, Dmowski M, Baj J, Bartosik D. Plasmid pAMI2 of Paracoccus aminophilus JCM 7686 carries N, N-dimethylformamide degradation-related genes whose expression is activated by a LuxR family regulator. Appl Environ Microbiol 2010, 76(6):1861-1869. 10.1128/AEM.01926-09, 2837997, 20118371.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.6 , pp. 1861-1869
    • Dziewit, L.1    Dmowski, M.2    Baj, J.3    Bartosik, D.4
  • 26
    • 0034192966 scopus 로고    scopus 로고
    • The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences
    • 10.1111/j.1574-6968.2000.tb09074.x, 10779705
    • Studholme DJ, Buck M. The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences. FEMS Microbiol Lett 2000, 186:1-9. 10.1111/j.1574-6968.2000.tb09074.x, 10779705.
    • (2000) FEMS Microbiol Lett , vol.186 , pp. 1-9
    • Studholme, D.J.1    Buck, M.2
  • 27
    • 0242386460 scopus 로고    scopus 로고
    • Identifying global regulators in transcriptional regulatory networks in bacteria
    • 10.1016/j.mib.2003.09.002, 14572541
    • Martinez-Antonio A, Collado-Vides J. Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol 2003, 6:482-489. 10.1016/j.mib.2003.09.002, 14572541.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 482-489
    • Martinez-Antonio, A.1    Collado-Vides, J.2
  • 28
    • 58949097886 scopus 로고    scopus 로고
    • Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
    • 10.1099/mic.0.2008/022772-0, 19047729
    • Maddocks SE, Oyston PC. Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 2008, 154:3609-3623. 10.1099/mic.0.2008/022772-0, 19047729.
    • (2008) Microbiology , vol.154 , pp. 3609-3623
    • Maddocks, S.E.1    Oyston, P.C.2
  • 29
    • 66849113516 scopus 로고    scopus 로고
    • LuxR-family 'solos': bachelor sensors/regulators of signalling molecules
    • Subramoni S, Venturi V. LuxR-family 'solos': bachelor sensors/regulators of signalling molecules. Microbiology 2009, 155(Pt 5):1377-1385.
    • (2009) Microbiology , vol.155 , Issue.PART 5 , pp. 1377-1385
    • Subramoni, S.1    Venturi, V.2
  • 30
    • 0036400593 scopus 로고    scopus 로고
    • Histidine protein kinases: key signal transducers outside the animal kingdom
    • REVIEWS3013
    • Wolanin PM, Thomason PA, Stock JB. Histidine protein kinases: key signal transducers outside the animal kingdom. Genome Biol 2002, 3(10). REVIEWS3013.
    • (2002) Genome Biol , vol.3 , Issue.10
    • Wolanin, P.M.1    Thomason, P.A.2    Stock, J.B.3
  • 31
    • 33646236072 scopus 로고    scopus 로고
    • Cross-talk towards the response regulator NtrC controlling nitrogen metabolism in Rhodobacter capsulatus
    • 10.1111/j.1574-6968.2006.00228.x, 16640581
    • Drepper T, Wiethaus J, Giaourakis D, Gross S, Schubert B, Vogt M, Wiencek Y, McEwan AG, Masepohl B. Cross-talk towards the response regulator NtrC controlling nitrogen metabolism in Rhodobacter capsulatus. FEMS Microbiol Lett 2006, 258:250-256. 10.1111/j.1574-6968.2006.00228.x, 16640581.
    • (2006) FEMS Microbiol Lett , vol.258 , pp. 250-256
    • Drepper, T.1    Wiethaus, J.2    Giaourakis, D.3    Gross, S.4    Schubert, B.5    Vogt, M.6    Wiencek, Y.7    McEwan, A.G.8    Masepohl, B.9
  • 32
    • 84864832413 scopus 로고    scopus 로고
    • CheA-receptor interaction sites in bacterial chemotaxis
    • 10.1016/j.jmb.2012.05.023, 3418421, 22659323
    • Wang X, Vu A, Lee K, Dahlquist FW. CheA-receptor interaction sites in bacterial chemotaxis. J Mol Biol 2012, 422:282-290. 10.1016/j.jmb.2012.05.023, 3418421, 22659323.
    • (2012) J Mol Biol , vol.422 , pp. 282-290
    • Wang, X.1    Vu, A.2    Lee, K.3    Dahlquist, F.W.4
  • 33
    • 42149150462 scopus 로고    scopus 로고
    • The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis
    • 10.1111/j.1574-6976.2008.00101.x, 18248418
    • Lamarche MG, Wanner BL, Crepin S, Harel J. The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis. FEMS Microbiol Rev 2008, 32:461-473. 10.1111/j.1574-6976.2008.00101.x, 18248418.
    • (2008) FEMS Microbiol Rev , vol.32 , pp. 461-473
    • Lamarche, M.G.1    Wanner, B.L.2    Crepin, S.3    Harel, J.4
  • 34
    • 0242524371 scopus 로고    scopus 로고
    • Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus
    • 10.1146/annurev.micro.57.030502.091006, 14527278
    • Ausmees N, Jacobs-Wagner C. Spatial and temporal control of differentiation and cell cycle progression in Caulobacter crescentus. Annu Rev Microbiol 2003, 57:225-247. 10.1146/annurev.micro.57.030502.091006, 14527278.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 225-247
    • Ausmees, N.1    Jacobs-Wagner, C.2
  • 35
    • 0037122935 scopus 로고    scopus 로고
    • C4-dicarboxylate carriers and sensors in bacteria
    • 10.1016/S0005-2728(01)00233-X, 11803016
    • Janausch IG, Zientz E, Tran QH, Kroger A, Unden G. C4-dicarboxylate carriers and sensors in bacteria. Biochim Biophys Acta 2002, 1553:39-56. 10.1016/S0005-2728(01)00233-X, 11803016.
    • (2002) Biochim Biophys Acta , vol.1553 , pp. 39-56
    • Janausch, I.G.1    Zientz, E.2    Tran, Q.H.3    Kroger, A.4    Unden, G.5
  • 36
    • 70049112105 scopus 로고    scopus 로고
    • The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC)
    • 10.1371/journal.ppat.1000553, 2726761, 19696934
    • Hughes DT, Clarke MB, Yamamoto K, Rasko DA, Sperandio V. The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC). PLoS Pathog 2009, 5:e1000553. 10.1371/journal.ppat.1000553, 2726761, 19696934.
    • (2009) PLoS Pathog , vol.5
    • Hughes, D.T.1    Clarke, M.B.2    Yamamoto, K.3    Rasko, D.A.4    Sperandio, V.5
  • 37
    • 0033523121 scopus 로고    scopus 로고
    • Autophosphorylation, phosphotransfer, and DNA-binding properties of the RegB/RegA two-component regulatory system in Rhodobacter capsulatus
    • 10.1074/jbc.274.23.16343, 10347192
    • Bird TH, Du S, Bauer CE. Autophosphorylation, phosphotransfer, and DNA-binding properties of the RegB/RegA two-component regulatory system in Rhodobacter capsulatus. J Biol Chem 1999, 274:16343-16348. 10.1074/jbc.274.23.16343, 10347192.
    • (1999) J Biol Chem , vol.274 , pp. 16343-16348
    • Bird, T.H.1    Du, S.2    Bauer, C.E.3
  • 38
    • 0034704146 scopus 로고    scopus 로고
    • K + and ionic strength directly influence the autophosphorylation activity of the putative turgor sensor KdpD of Escherichia coli
    • 10.1074/jbc.M008917200, 11016946
    • Jung K, Veen M, Altendorf K. K + and ionic strength directly influence the autophosphorylation activity of the putative turgor sensor KdpD of Escherichia coli. J Biol Chem 2000, 275:40142-40147. 10.1074/jbc.M008917200, 11016946.
    • (2000) J Biol Chem , vol.275 , pp. 40142-40147
    • Jung, K.1    Veen, M.2    Altendorf, K.3
  • 39
    • 0029941952 scopus 로고    scopus 로고
    • An unorthodox sensor protein (TorS) mediates the induction of the tor structural genes in response to trimethylamine N-oxide in Escherichia coli
    • 10.1111/j.1365-2958.1996.tb02648.x, 8809780
    • Jourlin C, Bengrine A, Chippaux M, Mejean V. An unorthodox sensor protein (TorS) mediates the induction of the tor structural genes in response to trimethylamine N-oxide in Escherichia coli. Mol Microbiol 1996, 20:1297-1306. 10.1111/j.1365-2958.1996.tb02648.x, 8809780.
    • (1996) Mol Microbiol , vol.20 , pp. 1297-1306
    • Jourlin, C.1    Bengrine, A.2    Chippaux, M.3    Mejean, V.4
  • 40
    • 31144471322 scopus 로고    scopus 로고
    • Bacterial stress responses: what doesn't kill them can make then stronger
    • 10.1371/journal.pbio.0040023, 1326283, 16535775
    • Boor KJ. Bacterial stress responses: what doesn't kill them can make then stronger. PLoS Biol 2006, 4:e23. 10.1371/journal.pbio.0040023, 1326283, 16535775.
    • (2006) PLoS Biol , vol.4
    • Boor, K.J.1
  • 41
    • 58149518390 scopus 로고    scopus 로고
    • The bacterial LexA transcriptional repressor
    • 10.1007/s00018-008-8378-6, 18726173
    • Butala M, Zgur-Bertok D, Busby SJ. The bacterial LexA transcriptional repressor. Cell Mol Life Sci 2009, 66:82-93. 10.1007/s00018-008-8378-6, 18726173.
    • (2009) Cell Mol Life Sci , vol.66 , pp. 82-93
    • Butala, M.1    Zgur-Bertok, D.2    Busby, S.J.3
  • 42
    • 58149142958 scopus 로고    scopus 로고
    • The stringent response and cell cycle arrest in Escherichia coli
    • 10.1371/journal.pgen.1000300, 2586660, 19079575
    • Ferullo DJ, Lovett ST. The stringent response and cell cycle arrest in Escherichia coli. PLoS Genet 2008, 4:e1000300. 10.1371/journal.pgen.1000300, 2586660, 19079575.
    • (2008) PLoS Genet , vol.4
    • Ferullo, D.J.1    Lovett, S.T.2
  • 43
    • 0035807805 scopus 로고    scopus 로고
    • RelE, a global inhibitor of translation, is activated during nutritional stress
    • 10.1073/pnas.251327898, 64681, 11717402
    • Christensen SK, Mikkelsen M, Pedersen K, Gerdes K. RelE, a global inhibitor of translation, is activated during nutritional stress. Proc Natl Acad Sci U S A 2001, 98:14328-14333. 10.1073/pnas.251327898, 64681, 11717402.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 14328-14333
    • Christensen, S.K.1    Mikkelsen, M.2    Pedersen, K.3    Gerdes, K.4
  • 44
    • 0034982311 scopus 로고    scopus 로고
    • Microbial molecular chaperones
    • Lund PA. Microbial molecular chaperones. Adv Microb Physiol 2001, 44:93-140.
    • (2001) Adv Microb Physiol , vol.44 , pp. 93-140
    • Lund, P.A.1
  • 45
    • 84879014020 scopus 로고    scopus 로고
    • Cycling of RNAs on Hfq
    • 10.4161/rna.24044, 3710369, 23466677
    • Wagner EG. Cycling of RNAs on Hfq. RNA Biol 2013, 10:619-626. 10.4161/rna.24044, 3710369, 23466677.
    • (2013) RNA Biol , vol.10 , pp. 619-626
    • Wagner, E.G.1
  • 46
    • 33746660802 scopus 로고    scopus 로고
    • Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms
    • 10.1186/1471-2164-7-156, 1525184, 16780600
    • Chen B, Zhong D, Monteiro A. Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms. BMC Genomics 2006, 7:156. 10.1186/1471-2164-7-156, 1525184, 16780600.
    • (2006) BMC Genomics , vol.7 , pp. 156
    • Chen, B.1    Zhong, D.2    Monteiro, A.3
  • 47
    • 34047093352 scopus 로고    scopus 로고
    • Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus
    • 10.1186/1471-2180-7-17, 1839093, 17352799
    • Martins-Pinheiro M, Marques RC, Menck CF. Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus. BMC Microbiol 2007, 7:17. 10.1186/1471-2180-7-17, 1839093, 17352799.
    • (2007) BMC Microbiol , vol.7 , pp. 17
    • Martins-Pinheiro, M.1    Marques, R.C.2    Menck, C.F.3
  • 48
    • 84871340015 scopus 로고    scopus 로고
    • Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB
    • Wigley DB. Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB. Nat Rev Microbiol 2013, 11:9-13.
    • (2013) Nat Rev Microbiol , vol.11 , pp. 9-13
    • Wigley, D.B.1
  • 49
    • 0036842202 scopus 로고    scopus 로고
    • Shining a light on photolyases
    • 10.1038/ng1102-338, 12410227
    • Menck CF. Shining a light on photolyases. Nat Genet 2002, 32:338-339. 10.1038/ng1102-338, 12410227.
    • (2002) Nat Genet , vol.32 , pp. 338-339
    • Menck, C.F.1
  • 50
    • 0035979231 scopus 로고    scopus 로고
    • The subunit structure and catalytic mechanism of the Bacillus subtilis DNA repair enzyme spore photoproduct lyase
    • 10.1073/pnas.161278998, 55369, 11470912
    • Rebeil R, Nicholson WL. The subunit structure and catalytic mechanism of the Bacillus subtilis DNA repair enzyme spore photoproduct lyase. Proc Natl Acad Sci U S A 2001, 98:9038-9043. 10.1073/pnas.161278998, 55369, 11470912.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 9038-9043
    • Rebeil, R.1    Nicholson, W.L.2
  • 51
    • 0037068433 scopus 로고    scopus 로고
    • AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli
    • 10.1038/nature01048, 12226668
    • Falnes PO, Johansen RF, Seeberg E. AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli. Nature 2002, 419:178-182. 10.1038/nature01048, 12226668.
    • (2002) Nature , vol.419 , pp. 178-182
    • Falnes, P.O.1    Johansen, R.F.2    Seeberg, E.3
  • 52
    • 64349112326 scopus 로고    scopus 로고
    • Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more
    • 10.1111/j.1574-6976.2008.00159.x, 2941194, 19175412
    • Marinus MG, Casadesus J. Roles of DNA adenine methylation in host-pathogen interactions: mismatch repair, transcriptional regulation, and more. FEMS Microbiol Rev 2009, 33:488-503. 10.1111/j.1574-6976.2008.00159.x, 2941194, 19175412.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 488-503
    • Marinus, M.G.1    Casadesus, J.2
  • 53
    • 71849115781 scopus 로고    scopus 로고
    • Epigenetic regulation of the bacterial cell cycle
    • 10.1016/j.mib.2009.08.005, 19783470
    • Collier J. Epigenetic regulation of the bacterial cell cycle. Curr Opin Microbiol 2009, 12:722-729. 10.1016/j.mib.2009.08.005, 19783470.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 722-729
    • Collier, J.1
  • 54
    • 84858414949 scopus 로고    scopus 로고
    • Novel non-specific DNA adenine methyltransferases
    • 10.1093/nar/gkr1039, 3299994, 22102579
    • Drozdz M, Piekarowicz A, Bujnicki JM, Radlinska M. Novel non-specific DNA adenine methyltransferases. Nucleic Acids Res 2012, 40(5):2119-2130. 10.1093/nar/gkr1039, 3299994, 22102579.
    • (2012) Nucleic Acids Res , vol.40 , Issue.5 , pp. 2119-2130
    • Drozdz, M.1    Piekarowicz, A.2    Bujnicki, J.M.3    Radlinska, M.4
  • 55
    • 0031296919 scopus 로고    scopus 로고
    • Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid
    • Bartosik D, Bialkowska A, Baj J, Wlodarczyk M. Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid. Acta Microbiol Pol 1997, 46(4):387-392.
    • (1997) Acta Microbiol Pol , vol.46 , Issue.4 , pp. 387-392
    • Bartosik, D.1    Bialkowska, A.2    Baj, J.3    Wlodarczyk, M.4
  • 56
    • 0141532943 scopus 로고    scopus 로고
    • DNA repair by bacterial AlkB proteins
    • 10.1016/S0923-2508(03)00150-5, 14527653
    • Falnes PO, Rognes T. DNA repair by bacterial AlkB proteins. Res Microbiol 2003, 154:531-538. 10.1016/S0923-2508(03)00150-5, 14527653.
    • (2003) Res Microbiol , vol.154 , pp. 531-538
    • Falnes, P.O.1    Rognes, T.2
  • 57
    • 0043210397 scopus 로고    scopus 로고
    • Identification of the CysB-regulated gene, hslJ, related to the Escherichia coli novobiocin resistance phenotype
    • 10.1016/S0378-1097(03)00441-5, 12892888
    • Lilic M, Jovanovic M, Jovanovic G, Savic DJ. Identification of the CysB-regulated gene, hslJ, related to the Escherichia coli novobiocin resistance phenotype. FEMS Microbiol Lett 2003, 224:239-246. 10.1016/S0378-1097(03)00441-5, 12892888.
    • (2003) FEMS Microbiol Lett , vol.224 , pp. 239-246
    • Lilic, M.1    Jovanovic, M.2    Jovanovic, G.3    Savic, D.J.4
  • 58
    • 39749184089 scopus 로고    scopus 로고
    • Ammonia-induced formation of an AmtB-GlnK complex is not sufficient for nitrogenase regulation in the photosynthetic bacterium Rhodobacter capsulatus
    • 10.1128/JB.01643-07, 2258696, 18156251
    • Tremblay PL, Hallenbeck PC. Ammonia-induced formation of an AmtB-GlnK complex is not sufficient for nitrogenase regulation in the photosynthetic bacterium Rhodobacter capsulatus. J Bacteriol 2008, 190:1588-1594. 10.1128/JB.01643-07, 2258696, 18156251.
    • (2008) J Bacteriol , vol.190 , pp. 1588-1594
    • Tremblay, P.L.1    Hallenbeck, P.C.2
  • 59
    • 84865955876 scopus 로고    scopus 로고
    • Insights into the 1.59-Mbp largest plasmid of Azospirillum brasilense CBG497
    • 10.1007/s00203-012-0805-2, 22481309
    • Acosta-Cruz E, Wisniewski-Dye F, Rouy Z, Barbe V, Valdes M, Mavingui P. Insights into the 1.59-Mbp largest plasmid of Azospirillum brasilense CBG497. Arch Microbiol 2012, 194:725-736. 10.1007/s00203-012-0805-2, 22481309.
    • (2012) Arch Microbiol , vol.194 , pp. 725-736
    • Acosta-Cruz, E.1    Wisniewski-Dye, F.2    Rouy, Z.3    Barbe, V.4    Valdes, M.5    Mavingui, P.6
  • 60
    • 77950802816 scopus 로고    scopus 로고
    • Introducing the bacterial 'chromid': not a chromosome, not a plasmid
    • 10.1016/j.tim.2009.12.010, 20080407
    • Harrison PW, Lower RP, Kim NK, Young JP. Introducing the bacterial 'chromid': not a chromosome, not a plasmid. Trends Microbiol 2010, 18:141-148. 10.1016/j.tim.2009.12.010, 20080407.
    • (2010) Trends Microbiol , vol.18 , pp. 141-148
    • Harrison, P.W.1    Lower, R.P.2    Kim, N.K.3    Young, J.P.4
  • 61
    • 79953290196 scopus 로고    scopus 로고
    • Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum
    • 10.1186/1471-2180-11-66, 3082293, 21463532
    • Villasenor T, Brom S, Davalos A, Lozano L, Romero D, Los Santos AG. Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum. BMC Microbiol 2011, 11:66. 10.1186/1471-2180-11-66, 3082293, 21463532.
    • (2011) BMC Microbiol , vol.11 , pp. 66
    • Villasenor, T.1    Brom, S.2    Davalos, A.3    Lozano, L.4    Romero, D.5    Los Santos, A.G.6
  • 62
    • 79952382560 scopus 로고    scopus 로고
    • Plasmids with a chromosome-like role in rhizobia
    • 10.1128/JB.01184-10, 3067620, 21217003
    • Landeta C, Davalos A, Cevallos MA, Geiger O, Brom S, Romero D. Plasmids with a chromosome-like role in rhizobia. J Bacteriol 2011, 193:1317-1326. 10.1128/JB.01184-10, 3067620, 21217003.
    • (2011) J Bacteriol , vol.193 , pp. 1317-1326
    • Landeta, C.1    Davalos, A.2    Cevallos, M.A.3    Geiger, O.4    Brom, S.5    Romero, D.6
  • 63
    • 8844259469 scopus 로고    scopus 로고
    • Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems
    • 10.1016/j.bbamcr.2004.02.013, 15546668
    • Christie PJ. Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems. Biochim Biophys Acta 2004, 1694:219-234. 10.1016/j.bbamcr.2004.02.013, 15546668.
    • (2004) Biochim Biophys Acta , vol.1694 , pp. 219-234
    • Christie, P.J.1
  • 64
    • 79957529450 scopus 로고    scopus 로고
    • How proteins form disulfide bonds
    • 10.1089/ars.2010.3575, 20849374
    • Depuydt M, Messens J, Collet JF. How proteins form disulfide bonds. Antioxid Redox Signal 2011, 15:49-66. 10.1089/ars.2010.3575, 20849374.
    • (2011) Antioxid Redox Signal , vol.15 , pp. 49-66
    • Depuydt, M.1    Messens, J.2    Collet, J.F.3
  • 65
    • 33744801394 scopus 로고    scopus 로고
    • Bacteriophages and pathogenicity: more than just providing a toxin?
    • 10.1016/j.micinf.2005.12.013, 16698301
    • Tinsley CR, Bille E, Nassif X. Bacteriophages and pathogenicity: more than just providing a toxin?. Microbes Infect 2006, 8:1365-1371. 10.1016/j.micinf.2005.12.013, 16698301.
    • (2006) Microbes Infect , vol.8 , pp. 1365-1371
    • Tinsley, C.R.1    Bille, E.2    Nassif, X.3
  • 66
    • 33846659065 scopus 로고    scopus 로고
    • Importance of widespread gene transfer agent genes in alpha-proteobacteria
    • 10.1016/j.tim.2006.12.001, 17184993
    • Lang AS, Beatty JT. Importance of widespread gene transfer agent genes in alpha-proteobacteria. Trends Microbiol 2007, 15:54-62. 10.1016/j.tim.2006.12.001, 17184993.
    • (2007) Trends Microbiol , vol.15 , pp. 54-62
    • Lang, A.S.1    Beatty, J.T.2
  • 67
    • 0028214048 scopus 로고
    • Translational control in production of transposase and in transposition of insertion sequence IS3
    • 10.1006/jmbi.1994.1097, 8107082
    • Sekine Y, Eisaki N, Ohtsubo E. Translational control in production of transposase and in transposition of insertion sequence IS3. J Mol Biol 1994, 235(5):1406-1420. 10.1006/jmbi.1994.1097, 8107082.
    • (1994) J Mol Biol , vol.235 , Issue.5 , pp. 1406-1420
    • Sekine, Y.1    Eisaki, N.2    Ohtsubo, E.3
  • 68
    • 84876520217 scopus 로고    scopus 로고
    • Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti
    • 10.1093/gbe/evt027, 3622305, 23431003
    • Galardini M, Pini F, Bazzicalupo M, Biondi EG, Mengoni A. Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti. Genome Biol Evol 2013, 5:542-558. 10.1093/gbe/evt027, 3622305, 23431003.
    • (2013) Genome Biol Evol , vol.5 , pp. 542-558
    • Galardini, M.1    Pini, F.2    Bazzicalupo, M.3    Biondi, E.G.4    Mengoni, A.5
  • 69
    • 84876675019 scopus 로고    scopus 로고
    • Phenotype profiling of Rhizobium leguminosarum bv. trifolii clover nodule isolates reveal their both versatile and specialized metabolic capabilities
    • 10.1007/s00203-013-0874-x, 3597991, 23417392
    • Mazur A, Stasiak G, Wielbo J, Koper P, Kubik-Komar A, Skorupska A. Phenotype profiling of Rhizobium leguminosarum bv. trifolii clover nodule isolates reveal their both versatile and specialized metabolic capabilities. Arch Microbiol 2013, 195:255-267. 10.1007/s00203-013-0874-x, 3597991, 23417392.
    • (2013) Arch Microbiol , vol.195 , pp. 255-267
    • Mazur, A.1    Stasiak, G.2    Wielbo, J.3    Koper, P.4    Kubik-Komar, A.5    Skorupska, A.6
  • 70
    • 77954617676 scopus 로고    scopus 로고
    • Why genes evolve faster on secondary chromosomes in bacteria
    • 10.1371/journal.pcbi.1000732, 2848543, 20369015
    • Cooper VS, Vohr SH, Wrocklage SC, Hatcher PJ. Why genes evolve faster on secondary chromosomes in bacteria. PLoS Comput Biol 2010, 6:e1000732. 10.1371/journal.pcbi.1000732, 2848543, 20369015.
    • (2010) PLoS Comput Biol , vol.6
    • Cooper, V.S.1    Vohr, S.H.2    Wrocklage, S.C.3    Hatcher, P.J.4
  • 71
    • 84876521834 scopus 로고    scopus 로고
    • Evolutionary effects of translocations in bacterial genomes
    • 10.1093/gbe/evs099, 3542574, 23160175
    • Morrow JD, Cooper VS. Evolutionary effects of translocations in bacterial genomes. Genome Biol Evol 2012, 4:1256-1262. 10.1093/gbe/evs099, 3542574, 23160175.
    • (2012) Genome Biol Evol , vol.4 , pp. 1256-1262
    • Morrow, J.D.1    Cooper, V.S.2
  • 72
    • 79957546504 scopus 로고    scopus 로고
    • Intragenomic diversity of Rhizobium leguminosarum bv. trifolii clover nodule isolates
    • 10.1186/1471-2180-11-123, 3123555, 21619713
    • Mazur A, Stasiak G, Wielbo J, Kubik-Komar A, Marek-Kozaczuk M, Skorupska A. Intragenomic diversity of Rhizobium leguminosarum bv. trifolii clover nodule isolates. BMC Microbiol 2011, 11:123. 10.1186/1471-2180-11-123, 3123555, 21619713.
    • (2011) BMC Microbiol , vol.11 , pp. 123
    • Mazur, A.1    Stasiak, G.2    Wielbo, J.3    Kubik-Komar, A.4    Marek-Kozaczuk, M.5    Skorupska, A.6
  • 73
    • 84857493477 scopus 로고    scopus 로고
    • Genome engineering in Vibrio cholerae: a feasible approach to address biological issues
    • 10.1371/journal.pgen.1002472, 3257285, 22253612
    • Val ME, Skovgaard O, Ducos-Galand M, Bland MJ, Mazel D. Genome engineering in Vibrio cholerae: a feasible approach to address biological issues. PLoS Genet 2012, 8(1):e1002472. 10.1371/journal.pgen.1002472, 3257285, 22253612.
    • (2012) PLoS Genet , vol.8 , Issue.1
    • Val, M.E.1    Skovgaard, O.2    Ducos-Galand, M.3    Bland, M.J.4    Mazel, D.5
  • 74
    • 84876672324 scopus 로고    scopus 로고
    • Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade
    • 10.1007/s00253-013-4746-8, 23435940
    • Petersen J, Frank O, Goker M, Pradella S. Extrachromosomal, extraordinary and essential-the plasmids of the Roseobacter clade. Appl Microbiol Biotechnol 2013, 97:2805-2815. 10.1007/s00253-013-4746-8, 23435940.
    • (2013) Appl Microbiol Biotechnol , vol.97 , pp. 2805-2815
    • Petersen, J.1    Frank, O.2    Goker, M.3    Pradella, S.4
  • 76
    • 0021191671 scopus 로고
    • Rhizobium phaseoli symbiotic mutants with transposon Tn5 insertions
    • 215392, 6325385
    • Noel KD, Sanchez A, Fernandez L, Leemans J, Cevallos MA. Rhizobium phaseoli symbiotic mutants with transposon Tn5 insertions. J Bacteriol 1984, 158(1):148-155. 215392, 6325385.
    • (1984) J Bacteriol , vol.158 , Issue.1 , pp. 148-155
    • Noel, K.D.1    Sanchez, A.2    Fernandez, L.3    Leemans, J.4    Cevallos, M.A.5
  • 77
    • 0017403241 scopus 로고
    • Heterotrophic growth of Thiobacillus A2 on sugars and organic acids
    • 10.1007/BF00492033, 879963
    • Wood AP, Kelly DP. Heterotrophic growth of Thiobacillus A2 on sugars and organic acids. Arch Microbiol 1977, 113(3):257-264. 10.1007/BF00492033, 879963.
    • (1977) Arch Microbiol , vol.113 , Issue.3 , pp. 257-264
    • Wood, A.P.1    Kelly, D.P.2
  • 78
    • 0002480530 scopus 로고
    • Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development
    • Wheatcroft R, McRae GD, Miller RW. Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development. Mol Plant Microbe Interact 1990, 3:9-17.
    • (1990) Mol Plant Microbe Interact , vol.3 , pp. 9-17
    • Wheatcroft, R.1    McRae, G.D.2    Miller, R.W.3
  • 79
    • 0002846133 scopus 로고
    • An improved method for transformation of E. coli with ColE1 derived plasmids
    • Amsterdam: Elsevier/North-Holland, Boyer HB, Nicosia S
    • Kushner SR. An improved method for transformation of E. coli with ColE1 derived plasmids. Genetic Engineering 1978, 17-23. Amsterdam: Elsevier/North-Holland, Boyer HB, Nicosia S.
    • (1978) Genetic Engineering , pp. 17-23
    • Kushner, S.R.1
  • 80
    • 0035688331 scopus 로고    scopus 로고
    • Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1
    • 10.1128/JB.183.21.6234-6243.2001, 100104, 11591666
    • Bartosik D, Szymanik M, Wysocka E. Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1. J Bacteriol 2001, 183(21):6234-6243. 10.1128/JB.183.21.6234-6243.2001, 100104, 11591666.
    • (2001) J Bacteriol , vol.183 , Issue.21 , pp. 6234-6243
    • Bartosik, D.1    Szymanik, M.2    Wysocka, E.3
  • 81
    • 62449323971 scopus 로고    scopus 로고
    • Basic phage electron microscopy
    • 10.1007/978-1-60327-164-6_12, 19066816
    • Ackermann HW. Basic phage electron microscopy. Methods Mol Biol 2009, 501:113-126. 10.1007/978-1-60327-164-6_12, 19066816.
    • (2009) Methods Mol Biol , vol.501 , pp. 113-126
    • Ackermann, H.W.1
  • 83
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • 10.1093/nar/25.17.3389, 146917, 9254694
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 84
    • 0345531106 scopus 로고    scopus 로고
    • Enzyme-specific profiles for genome annotation: PRIAM
    • 10.1093/nar/gkg847, 275543, 14602924
    • Claudel-Renard C, Chevalet C, Faraut T, Kahn D. Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Res 2003, 31:6633-6639. 10.1093/nar/gkg847, 275543, 14602924.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6633-6639
    • Claudel-Renard, C.1    Chevalet, C.2    Faraut, T.3    Kahn, D.4
  • 85
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • 10.1093/nar/25.5.0955, 146525, 9023104
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 10.1093/nar/25.5.0955, 146525, 9023104.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 87
    • 33644873699 scopus 로고    scopus 로고
    • ISfinder: the reference centre for bacterial insertion sequences
    • 10.1093/nar/gkj014, 1347377, 16381877
    • Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res 2006, 34:D32-D36. 10.1093/nar/gkj014, 1347377, 16381877.
    • (2006) Nucleic Acids Res , vol.34
    • Siguier, P.1    Perochon, J.2    Lestrade, L.3    Mahillon, J.4    Chandler, M.5
  • 88
    • 56649123520 scopus 로고    scopus 로고
    • Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
    • 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581
    • Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, Parkhill J, Rajandream MA. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 2008, 24:2672-2676. 10.1093/bioinformatics/btn529, 2606163,2606163, 18845581.
    • (2008) Bioinformatics , vol.24 , pp. 2672-2676
    • Carver, T.1    Berriman, M.2    Tivey, A.3    Patel, C.4    Bohme, U.5    Barrell, B.G.6    Parkhill, J.7    Rajandream, M.A.8
  • 89
    • 67649159262 scopus 로고    scopus 로고
    • EDGAR: a software framework for the comparative analysis of prokaryotic genomes
    • 10.1186/1471-2105-10-154, 2696450, 19457249
    • Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A. EDGAR: a software framework for the comparative analysis of prokaryotic genomes. BMC Bioinformatics 2009, 10:154. 10.1186/1471-2105-10-154, 2696450, 19457249.
    • (2009) BMC Bioinformatics , vol.10 , pp. 154
    • Blom, J.1    Albaum, S.P.2    Doppmeier, D.3    Puhler, A.4    Vorholter, F.J.5    Zakrzewski, M.6    Goesmann, A.7
  • 90
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 91
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • 10.1080/10635150701472164, 17654362
    • Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56(4):564-577. 10.1080/10635150701472164, 17654362.
    • (2007) Syst Biol , vol.56 , Issue.4 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 92
    • 0000122573 scopus 로고
    • PHYLIP - phylogeny inference package (version 3.2)
    • Felsenstein J. PHYLIP - phylogeny inference package (version 3.2). Cladistics 1989, 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 93
    • 77949991970 scopus 로고    scopus 로고
    • Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0
    • 10.1186/1756-0500-3-41, 2844394, 20178631
    • Mahadevan P, Seto D. Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0. BMC Res Notes 2010, 3:41. 10.1186/1756-0500-3-41, 2844394, 20178631.
    • (2010) BMC Res Notes , vol.3 , pp. 41
    • Mahadevan, P.1    Seto, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.