메뉴 건너뛰기




Volumn 5, Issue 5, 2013, Pages 934-953

Life in an arsenic-containing gold mine: Genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26

(23)  Andres, Jérémy a   Arsène Ploetze, Florence a   Barbe, Valérie b   Brochier Armanet, Céline c   Cleiss Arnold, Jessica a   Coppée, Jean Yves d   Dillies, Marie Agnès d   Geist, Lucie a   Joublin, Aurélie a   Koechler, Sandrine a   Lassalle, Florent c,e   Marchal, Marie a   Médigue, Claudine b   Muller, Daniel c   Nesme, Xavier c   Plewniak, Frédéric a   Proux, Caroline d   Ramírez Bahena, Martha Helena c,f   Schenowitz, Chantal b   Sismeiro, Odile d   more..


Author keywords

Arsenic metabolism; Motility biofilm; Phylogeny; Rhizobium Agrobacterium; Rhizosphere; Transcriptomics proteomics

Indexed keywords

ARSENIC TRIOXIDE; ARSENOUS ACID DERIVATIVE; GOLD;

EID: 84886297012     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt061     Document Type: Article
Times cited : (63)

References (92)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 77649223742 scopus 로고    scopus 로고
    • Structure, function, and evolution of the Thiomonas spp genome
    • Arsène-Ploetze F, et al. 2010. Structure, function, and evolution of the Thiomonas spp. genome. PLoS Genet. 6:e1000859.
    • (2010) PLoS Genet. , vol.6
    • Arsène-Ploetze, F.1
  • 3
    • 58349105386 scopus 로고    scopus 로고
    • High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
    • Aury J-M, et al. 2008. High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. BMC Genomics 9:603.
    • (2008) BMC Genomics , vol.9 , pp. 603
    • Aury, J.-M.1
  • 5
    • 80054744476 scopus 로고    scopus 로고
    • Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteogenomics
    • Bertin PN, et al. 2011. Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteogenomics. ISME J. 5:1735-1747.
    • (2011) ISME J. , vol.5 , pp. 1735-1747
    • Bertin, P.N.1
  • 6
    • 85073741638 scopus 로고    scopus 로고
    • Microbial arsenic response and metabolism in the genomics era
    • Santini JM, Ward SA, editors, London: CRC Press
    • Bertin PN, et al. 2012. Microbial arsenic response and metabolism in the genomics era. In: Santini JM, Ward SA, editors. The metabolism of arsenite. London: CRC Press. p. 99-114.
    • (2012) The Metabolism of Arsenite , pp. 99-114
    • Bertin, P.N.1
  • 7
    • 39749167868 scopus 로고    scopus 로고
    • Advances in environmental genomics: Towards an integrated view of micro-organisms and ecosystems
    • Bertin PN, Médigue C, Normand P. 2008. Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems. Microbiology 154:347-359.
    • (2008) Microbiology , vol.154 , pp. 347-359
    • Bertin, P.N.1    Médigue, C.2    Normand, P.3
  • 9
    • 75349085401 scopus 로고    scopus 로고
    • Biogeochemical redox processes and their impact on contaminant dynamics
    • Borch T, et al. 2010. Biogeochemical redox processes and their impact on contaminant dynamics. Environ Sci Technol. 44:15-23.
    • (2010) Environ Sci Technol. , vol.44 , pp. 15-23
    • Borch, T.1
  • 10
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 72:248-254.
    • (1976) Anal Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 11
    • 46149098904 scopus 로고    scopus 로고
    • Sequencing and expression of two arsenic resistance operons with different functions in the highly arsenic-resistant strain Ochrobactrum tritici SCII24T
    • Branco R, Chung A-P, Morais PV. 2008. Sequencing and expression of two arsenic resistance operons with different functions in the highly arsenic-resistant strain Ochrobactrum tritici SCII24T. BMC Microbiol. 8:95.
    • (2008) BMC Microbiol. , vol.8 , pp. 95
    • Branco, R.1    Chung, A.-P.2    Morais, P.V.3
  • 12
    • 68949094431 scopus 로고    scopus 로고
    • Carbon and arsenic metabolism in Thiomonas strains: Differences revealed diverse adaptation processes
    • Bryan CG, et al. 2009. Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes. BMC Microbiol. 9:127.
    • (2009) BMC Microbiol. , vol.9 , pp. 127
    • Bryan, C.G.1
  • 13
    • 33746105720 scopus 로고    scopus 로고
    • Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome
    • Carapito C, et al. 2006. Identification of genes and proteins involved in the pleiotropic response to arsenic stress in Caenibacter arsenoxydans, a metalloresistant beta-proteobacterium with an unsequenced genome. Biochimie 88:595-606.
    • (2006) Biochimie , vol.88 , pp. 595-606
    • Carapito, C.1
  • 14
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17:540-552.
    • (2000) Mol Biol Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 15
    • 25144457037 scopus 로고    scopus 로고
    • Transcriptional regulation of flhDC by QseBC and sigma (FliA) in enterohaemorrhagic Escherichia coli
    • Clarke MB, Sperandio V. 2005. Transcriptional regulation of flhDC by QseBC and sigma (FliA) in enterohaemorrhagic Escherichia coli. Mol Microbiol. 57:1734-1749.
    • (2005) Mol Microbiol. , vol.57 , pp. 1734-1749
    • Clarke, M.B.1    Sperandio, V.2
  • 16
    • 78650154727 scopus 로고    scopus 로고
    • Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans
    • Cleiss-Arnold J, et al. 2010. Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans. BMC Genomics 11:709.
    • (2010) BMC Genomics , vol.11 , pp. 709
    • Cleiss-Arnold, J.1
  • 17
    • 18644378535 scopus 로고    scopus 로고
    • Nitric oxide is involved in the Azospirillum brasilense-induced lateral root formation in tomato
    • Creus CM, et al. 2005. Nitric oxide is involved in the Azospirillum brasilense-induced lateral root formation in tomato. Planta 221:297-303.
    • (2005) Planta , vol.221 , pp. 297-303
    • Creus, C.M.1
  • 18
    • 77954403053 scopus 로고    scopus 로고
    • BMGE (block mapping and gathering with entropy): A new software for selection of phylogenetic informative regions from multiple sequence alignments
    • Criscuolo A, Gribaldo S. 2010. BMGE (block mapping and gathering with entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol. 10:210.
    • (2010) BMC Evol Biol. , vol.10 , pp. 210
    • Criscuolo, A.1    Gribaldo, S.2
  • 19
    • 2942537016 scopus 로고    scopus 로고
    • Phosphorus limitation enhances biofilm formation of the plant pathogen Agrobacterium tumefaciens through the PhoR-PhoB regulatory system
    • Danhorn T, Hentzer M, Givskov M, Parsek MR, Fuqua C. 2004. Phosphorus limitation enhances biofilm formation of the plant pathogen Agrobacterium tumefaciens through the PhoR-PhoB regulatory system. J Bacteriol. 186:4492-4501.
    • (2004) J Bacteriol. , vol.186 , pp. 4492-4501
    • Danhorn, T.1    Hentzer, M.2    Givskov, M.3    Parsek, M.R.4    Fuqua, C.5
  • 20
    • 0642312312 scopus 로고    scopus 로고
    • The source of laterally transferred genes in bacterial genomes
    • Daubin V, Lerat E, Perrière G. 2003. The source of laterally transferred genes in bacterial genomes. Genome Biol. 4:R57.
    • (2003) Genome Biol. , vol.4
    • Daubin, V.1    Lerat, E.2    Perrière, G.3
  • 21
    • 0029904404 scopus 로고    scopus 로고
    • Rhizobium lipo-chitooligosaccharide nodulation factors: Signaling molecules mediating recognition and morphogenesis
    • Dénarié J, Debellé F, Promé JC. 1996. Rhizobium lipo-chitooligosaccharide nodulation factors: signaling molecules mediating recognition and morphogenesis. Annu Rev Biochem. 65:503-535.
    • (1996) Annu Rev Biochem. , vol.65 , pp. 503-535
    • Dénarié, J.1    Debellé, F.2    Promé, J.C.3
  • 22
    • 79251573854 scopus 로고    scopus 로고
    • Inference of homologous recombination in bacteria using whole-genome sequences
    • Didelot X, Lawson D, Darling A, Falush D. 2010. Inference of homologous recombination in bacteria using whole-genome sequences. Genetics 186:1435-1449.
    • (2010) Genetics , vol.186 , pp. 1435-1449
    • Didelot, X.1    Lawson, D.2    Darling, A.3    Falush, D.4
  • 23
    • 55549117557 scopus 로고    scopus 로고
    • The plant growth-promoting effect and plant responses
    • Elmerich C, Newton WE, editors, Nitrogen fixation: origins, applications, and research progress V. Dordrecht The Netherlands: Springer
    • Dobbelaere S, Okon Y. 2007. The plant growth-promoting effect and plant responses. In: Elmerich C, Newton WE, editors. Associative and endophytic nitrogen-fixing bacteria and cyanobacterial associations. Nitrogen fixation: origins, applications, and research progress V. Dordrecht (The Netherlands): Springer. p. 145-170.
    • (2007) Associative and Endophytic Nitrogen-fixing Bacteria and Cyanobacterial Associations , pp. 145-170
    • Dobbelaere, S.1    Okon, Y.2
  • 24
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 25
    • 47249107417 scopus 로고    scopus 로고
    • Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2. 4.1: Combined transcriptome and proteome analysis
    • Eraso JM, et al. 2008. Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2. 4.1: combined transcriptome and proteome analysis. J Bacteriol. 190:4831-4848.
    • (2008) J Bacteriol. , vol.190 , pp. 4831-4848
    • Eraso, J.M.1
  • 26
    • 77749261551 scopus 로고    scopus 로고
    • Metals, minerals and microbes: Geomicrobiology and bioremediation
    • Gadd GM. 2010. Metals, minerals and microbes: geomicrobiology and bioremediation. Microbiology 156:609-643.
    • (2010) Microbiology , vol.156 , pp. 609-643
    • Gadd, G.M.1
  • 27
    • 0024042687 scopus 로고
    • Minimal region necessary for autonomous replication of pTAR
    • Gallie DR, Kado CI. 1988. Minimal region necessary for autonomous replication of pTAR. J Bacteriol. 170:3170-3176.
    • (1988) J Bacteriol. , vol.170 , pp. 3170-3176
    • Gallie, D.R.1    Kado, C.I.2
  • 28
    • 34249898934 scopus 로고    scopus 로고
    • Legumes symbioses: Absence of Nod genes in photosynthetic bradyrhizobia
    • Giraud E, et al. 2007. Legumes symbioses: absence of Nod genes in photosynthetic bradyrhizobia. Science 316:1307-1312.
    • (2007) Science , vol.316 , pp. 1307-1312
    • Giraud, E.1
  • 29
    • 33644861233 scopus 로고    scopus 로고
    • The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons
    • Gonzalez V, et al. 2006. The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. Proc Natl Acad Sci U S A. 103:3834-3839.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 3834-3839
    • Gonzalez, V.1
  • 30
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O. 2010. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol. 27:221-224.
    • (2010) Mol Biol Evol. , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 31
    • 84897584608 scopus 로고
    • Selection and initial characterization of partially nitrate tolerant nodulation mutants of soybean
    • Gremaud MF, Harper JE. 1989. Selection and initial characterization of partially nitrate tolerant nodulation mutants of soybean. Plant Physiol. 89:169-173.
    • (1989) Plant Physiol. , vol.89 , pp. 169-173
    • Gremaud, M.F.1    Harper, J.E.2
  • 32
    • 33746253734 scopus 로고    scopus 로고
    • Lead and cadmium biosorption by extracellular polymeric substances (EPS) extracted from activated sludges: Ph-sorption edge tests and mathematical equilibrium modelling
    • Guibaud G, Van Hullebusch E, Bordas F. 2006. Lead and cadmium biosorption by extracellular polymeric substances (EPS) extracted from activated sludges: pH-sorption edge tests and mathematical equilibrium modelling. Chemosphere 64:1955-1962.
    • (2006) Chemosphere , vol.64 , pp. 1955-1962
    • Guibaud, G.1    Van Hullebusch, E.2    Bordas, F.3
  • 34
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704.
    • (2003) Syst Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 35
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: From the natural environment to infectious diseases
    • Hall-Stoodley L, Costerton JW, Stoodley P. 2004. Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol. 2:95-108.
    • (2004) Nat Rev Microbiol. , vol.2 , pp. 95-108
    • Hall-Stoodley, L.1    Costerton, J.W.2    Stoodley, P.3
  • 36
    • 79960826586 scopus 로고    scopus 로고
    • ACC deaminase activity in avirulent Agrobacterium tumefaciens D3
    • Hao Y, Charles TC, Glick BR. 2011. ACC deaminase activity in avirulent Agrobacterium tumefaciens D3. Can J Microbiol. 57:278-286.
    • (2011) Can J Microbiol. , vol.57 , pp. 278-286
    • Hao, Y.1    Charles, T.C.2    Glick, B.R.3
  • 38
    • 79960081664 scopus 로고    scopus 로고
    • Unsuspected diversity of arsenite-oxidizing bacteria as revealed by widespread distribution of the aoxB gene in prokaryotes
    • Heinrich-Salmeron A, et al. 2011. Unsuspected diversity of arsenite-oxidizing bacteria as revealed by widespread distribution of the aoxB gene in prokaryotes. Appl Environ Microbiol. 77:4685-4692.
    • (2011) Appl Environ Microbiol. , vol.77 , pp. 4685-4692
    • Heinrich-Salmeron, A.1
  • 39
    • 70349970031 scopus 로고    scopus 로고
    • Comparison of two multimetal resistant bacterial strains: Enterobacter sp. YSU and Stenotrophomonas maltophilia ORO2
    • Holmes A, et al. 2009. Comparison of two multimetal resistant bacterial strains: Enterobacter sp. YSU and Stenotrophomonas maltophilia ORO2. Curr Microbiol. 59:526-531.
    • (2009) Curr Microbiol. , vol.59 , pp. 526-531
    • Holmes, A.1
  • 40
    • 0036253799 scopus 로고    scopus 로고
    • Effect of mild acid pH on the functioning of bacterial membranes in Vibrio cholerae
    • Hommais F, et al. 2002. Effect of mild acid pH on the functioning of bacterial membranes in Vibrio cholerae. Proteomics 2:571-579.
    • (2002) Proteomics , vol.2 , pp. 571-579
    • Hommais, F.1
  • 41
    • 0025348289 scopus 로고
    • Two plasmids other than the nodulation plasmid are necessary for formation of nitrogen-fixing nodules by Rhizobium leguminosarum
    • Hynes MF, McGregor NF. 1990. Two plasmids other than the nodulation plasmid are necessary for formation of nitrogen-fixing nodules by Rhizobium leguminosarum. Mol Microbiol. 4:567-574.
    • (1990) Mol Microbiol. , vol.4 , pp. 567-574
    • Hynes, M.F.1    McGregor, N.F.2
  • 42
    • 77956398098 scopus 로고    scopus 로고
    • The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments
    • Janssen PJ, et al. 2010. The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments. PLoS One 5:e10433.
    • (2010) PLoS One , vol.5
    • Janssen, P.J.1
  • 43
    • 60149088444 scopus 로고    scopus 로고
    • Genomic islands: Tools of bacterial horizontal gene transfer and evolution
    • Juhas M, et al. 2009. Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol Rev. 33:376-393.
    • (2009) FEMS Microbiol Rev. , vol.33 , pp. 376-393
    • Juhas, M.1
  • 45
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform. 9:286-298.
    • (2008) Brief Bioinform. , vol.9 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 46
    • 1842588824 scopus 로고    scopus 로고
    • Aeromonas flagella (polar and lateral) are enterocyte adhesins that contribute to biofilm formation on surfaces
    • Kirov SM, Castrisios M, Shaw JG. 2004. Aeromonas flagella (polar and lateral) are enterocyte adhesins that contribute to biofilm formation on surfaces. Infect Immun. 72:1939-1945.
    • (2004) Infect Immun. , vol.72 , pp. 1939-1945
    • Kirov, S.M.1    Castrisios, M.2    Shaw, J.G.3
  • 47
    • 77949438604 scopus 로고    scopus 로고
    • Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans
    • Koechler S, et al. 2010. Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans. BMC Microbiol. 10:53.
    • (2010) BMC Microbiol. , vol.10 , pp. 53
    • Koechler, S.1
  • 48
    • 84856387181 scopus 로고    scopus 로고
    • Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens
    • Lassalle F, et al. 2011. Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens. Genome Biol Evol. 3:762-781.
    • (2011) Genome Biol Evol. , vol.3 , pp. 762-781
    • Lassalle, F.1
  • 49
    • 45849154166 scopus 로고    scopus 로고
    • An improved general amino acid replacement matrix
    • Le SQ, Gascuel O. 2008. An improved general amino acid replacement matrix. Mol Biol Evol. 25:1307-1320.
    • (2008) Mol Biol Evol. , vol.25 , pp. 1307-1320
    • Le, S.Q.1    Gascuel, O.2
  • 51
    • 77954232499 scopus 로고    scopus 로고
    • Arsenite oxidase from Ralstonia sp. 22
    • Lieutaud A, et al. 2010. Arsenite oxidase from Ralstonia sp. 22. J Biol Chem. 285:20433-20441.
    • (2010) J Biol Chem. , vol.285 , pp. 20433-20441
    • Lieutaud, A.1
  • 52
    • 84859828097 scopus 로고    scopus 로고
    • A periplasmic arsenite-binding protein involved in regulating arsenite oxidation
    • Liu G, et al. 2012. A periplasmic arsenite-binding protein involved in regulating arsenite oxidation. Environ Microbiol. 14:1624-1634.
    • (2012) Environ Microbiol. , vol.14 , pp. 1624-1634
    • Liu, G.1
  • 53
    • 84865626440 scopus 로고    scopus 로고
    • Rhizobial extrachromosomal replicon variability, stability and expression in natural niches
    • López-Guerrero MG, et al. 2012. Rhizobial extrachromosomal replicon variability, stability and expression in natural niches. Plasmid 68:149-158.
    • (2012) Plasmid , vol.68 , pp. 149-158
    • López-Guerrero, M.G.1
  • 54
    • 77955361660 scopus 로고    scopus 로고
    • Effect of arsenite on swimming motility delays surface colonization in Herminiimonas arsenicoxydans
    • Marchal M, Briandet R, Koechler S, Kammerer B, Bertin PN. 2010. Effect of arsenite on swimming motility delays surface colonization in Herminiimonas arsenicoxydans. Microbiology 156:2336-2342.
    • (2010) Microbiology , vol.156 , pp. 2336-2342
    • Marchal, M.1    Briandet, R.2    Koechler, S.3    Kammerer, B.4    Bertin, P.N.5
  • 55
    • 80051847165 scopus 로고    scopus 로고
    • Subinhibitory arsenite concentrations lead to population dispersal in Thiomonas sp
    • Marchal M, et al. 2011. Subinhibitory arsenite concentrations lead to population dispersal in Thiomonas sp. PLoS One 6:e23181.
    • (2011) PLoS One , vol.6
    • Marchal, M.1
  • 56
    • 21244495253 scopus 로고    scopus 로고
    • The development of the DIGE system: 2D fluorescence difference gel analysis technology
    • Marouga R, David S, Hawkins E. 2005. The development of the DIGE system: 2D fluorescence difference gel analysis technology. Anal Bioanal Chem. 382:669-678.
    • (2005) Anal Bioanal Chem. , vol.382 , pp. 669-678
    • Marouga, R.1    David, S.2    Hawkins, E.3
  • 57
    • 33947324049 scopus 로고    scopus 로고
    • Multilocus sequence analysis of Ensifer and related taxa
    • Martens M, et al. 2007. Multilocus sequence analysis of Ensifer and related taxa. Int J Syst Evol Microbiol. 57:489-503.
    • (2007) Int J Syst Evol Microbiol. , vol.57 , pp. 489-503
    • Martens, M.1
  • 58
    • 83855165110 scopus 로고    scopus 로고
    • Should we stay or should we go: Mechanisms and ecological consequences for biofilm dispersal
    • McDougald D, Rice SA, Barraud N, Steinberg PD, Kjelleberg S. 2012. Should we stay or should we go: mechanisms and ecological consequences for biofilm dispersal. Nat Rev Microbiol. 10:39-50.
    • (2012) Nat Rev Microbiol. , vol.10 , pp. 39-50
    • McDougald, D.1    Rice, S.A.2    Barraud, N.3    Steinberg, P.D.4    Kjelleberg, S.5
  • 59
    • 34247589893 scopus 로고    scopus 로고
    • A tale of two oxidation states: Bacterial colonization of arsenic-rich environments
    • Muller D, et al. 2007. A tale of two oxidation states: bacterial colonization of arsenic-rich environments. PLoS Genet. 3:e53.
    • (2007) PLoS Genet. , vol.3
    • Muller, D.1
  • 61
    • 56649124733 scopus 로고    scopus 로고
    • Effect of flagella expression on adhesion of Achromobacter piechaudii to chalk surfaces
    • Nejidat A, Saadi I, Ronen Z. 2008. Effect of flagella expression on adhesion of Achromobacter piechaudii to chalk surfaces. J Appl Microbiol. 105:2009-2014.
    • (2008) J Appl Microbiol. , vol.105 , pp. 2009-2014
    • Nejidat, A.1    Saadi, I.2    Ronen, Z.3
  • 62
    • 85073736618 scopus 로고    scopus 로고
    • Prokaryotic aerobic oxidation of arsenite
    • Santini JM, Ward SA, editors, London: CRC Press
    • Osborne TH, Santini JM. 2012. Prokaryotic aerobic oxidation of arsenite. In: Santini JM, Ward SA, editors. The metabolism of arsenite. London: CRC Press. p. 61-72.
    • (2012) The Metabolism of Arsenite , pp. 61-72
    • Osborne, T.H.1    Santini, J.M.2
  • 63
    • 21844470975 scopus 로고    scopus 로고
    • Global analysis of cellular factors and responses involved in Pseudomonas aeruginosa resistance to arsenite
    • Parvatiyar K, et al. 2005. Global analysis of cellular factors and responses involved in Pseudomonas aeruginosa resistance to arsenite. J Bacteriol. 187:4853-4864.
    • (2005) J Bacteriol. , vol.187 , pp. 4853-4864
    • Parvatiyar, K.1
  • 64
    • 67649115335 scopus 로고    scopus 로고
    • Databases of homologous gene families for comparative genomics
    • Penel S, et al. 2009. Databases of homologous gene families for comparative genomics. BMC Bioinformatics 10 (6 Suppl):S3.
    • (2009) BMC Bioinformatics , vol.10 , Issue.6 SUPPL.
    • Penel, S.1
  • 65
    • 84871055832 scopus 로고    scopus 로고
    • Rapid and simultaneous detection of linear chromosome and large plasmids in proteobacteria
    • Ramírez-Bahena MH, Nesme X, Muller D. 2012. Rapid and simultaneous detection of linear chromosome and large plasmids in proteobacteria. J Basic Microbiol. 52:736-739.
    • (2012) J Basic Microbiol. , vol.52 , pp. 736-739
    • Ramírez-Bahena, M.H.1    Nesme, X.2    Muller, D.3
  • 66
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A. 2000. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 16:276-277.
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 67
    • 70149109204 scopus 로고    scopus 로고
    • Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms
    • Richardson AE, Barea J-M, McNeill AM, Prigent-Combaret C. 2009. Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms. Plant Soil. 321:305-339.
    • (2009) Plant Soil. , vol.321 , pp. 305-339
    • Richardson, A.E.1    Barea, J.-M.2    McNeill, A.M.3    Prigent-Combaret, C.4
  • 68
    • 0016740168 scopus 로고
    • Indole-3-acetic acid catabolism by soybean bacteroids
    • Rigaud J, Puppo A. 1975. Indole-3-acetic acid catabolism by soybean bacteroids. J Gen Microbiol. 88:223-228.
    • (1975) J Gen Microbiol. , vol.88 , pp. 223-228
    • Rigaud, J.1    Puppo, A.2
  • 69
    • 84860109324 scopus 로고    scopus 로고
    • MrBayes 3. 2: Efficient Bayesian phylogenetic inference and model choice across a large model space
    • Ronquist F, et al. 2012. MrBayes 3. 2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61:539-542.
    • (2012) Syst Biol. , vol.61 , pp. 539-542
    • Ronquist, F.1
  • 70
    • 33847133474 scopus 로고    scopus 로고
    • The NT-26 cytochrome c552 and its role in arsenite oxidation
    • Santini JM, et al. 2007. The NT-26 cytochrome c552 and its role in arsenite oxidation. Biochim Biophys Acta. 1767:189-196.
    • (2007) Biochim Biophys Acta. , vol.1767 , pp. 189-196
    • Santini, J.M.1
  • 71
    • 0033987849 scopus 로고    scopus 로고
    • A new chemolithoautotrophic arsenite-oxidizing bacterium isolated from a gold mine: Phylogenetic, physiological, and preliminary biochemical studies
    • Santini JM, Sly LI, Schnagl RD, Macy JM. 2000. A new chemolithoautotrophic arsenite-oxidizing bacterium isolated from a gold mine: phylogenetic, physiological, and preliminary biochemical studies. Appl Environ Microbiol. 66:92-97.
    • (2000) Appl Environ Microbiol. , vol.66 , pp. 92-97
    • Santini, J.M.1    Sly, L.I.2    Schnagl, R.D.3    Macy, J.M.4
  • 72
    • 1542347232 scopus 로고    scopus 로고
    • Molybdenum-containing arsenite oxidase of the chemolithoautotrophic arsenite oxidizer NT-26
    • Santini JM, Vanden Hoven RN. 2004. Molybdenum-containing arsenite oxidase of the chemolithoautotrophic arsenite oxidizer NT-26. J Bacteriol. 186:1614-1619.
    • (2004) J Bacteriol. , vol.186 , pp. 1614-1619
    • Santini, J.M.1    Vanden Hoven, R.N.2
  • 73
    • 78349291126 scopus 로고    scopus 로고
    • Characterization of a two-component signal transduction system that controls arsenite oxidation in the chemolithoautotroph NT-26
    • Sardiwal S, Santini JM, Osborne TH, Djordjevic S. 2010. Characterization of a two-component signal transduction system that controls arsenite oxidation in the chemolithoautotroph NT-26. FEMS Microbiol Lett. 313:20-28.
    • (2010) FEMS Microbiol Lett. , vol.313 , pp. 20-28
    • Sardiwal, S.1    Santini, J.M.2    Osborne, T.H.3    Djordjevic, S.4
  • 74
    • 65249095980 scopus 로고    scopus 로고
    • Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria
    • Slater SC, et al. 2009. Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria. J Bacteriol. 191:2501-2511.
    • (2009) J Bacteriol. , vol.191 , pp. 2501-2511
    • Slater, S.C.1
  • 75
    • 0033954685 scopus 로고    scopus 로고
    • VisN and VisR are global regulators of chemotaxis, flagellar, and motility genes in Sinorhizobium (Rhizobium) meliloti
    • Sourjik V, Muschler P, Scharf B, Schmitt R. 2000. VisN and VisR are global regulators of chemotaxis, flagellar, and motility genes in Sinorhizobium (Rhizobium) meliloti. J Bacteriol. 182:782-788.
    • (2000) J Bacteriol. , vol.182 , pp. 782-788
    • Sourjik, V.1    Muschler, P.2    Scharf, B.3    Schmitt, R.4
  • 76
    • 74249110177 scopus 로고    scopus 로고
    • Chapter 7: Plant growthpromoting actions of rhizobacteria
    • Van Loon LC, editor, Burlington: Academic Press
    • Spaepen S, Vanderleyden J, Okon Y. 2009. Chapter 7: Plant growthpromoting actions of rhizobacteria. In: Van Loon LC, editor. Advances in botanical research, Vol. 51. Burlington: Academic Press. p. 283-320.
    • (2009) Advances in Botanical Research , vol.51 , pp. 283-320
    • Spaepen, S.1    Vanderleyden, J.2    Okon, Y.3
  • 77
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 79
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: Robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P. 2006. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res. 34:W609-W612.
    • (2006) Nucleic Acids Res. , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 80
    • 0032842702 scopus 로고    scopus 로고
    • A bifunctional transposon mini-Tn5gfp-km which can be used to select for promoter fusions and report gene expression levels in Agrobacterium tumefaciens
    • Tang X, Lu BF, Pan SQ. 1999. A bifunctional transposon mini-Tn5gfp-km which can be used to select for promoter fusions and report gene expression levels in Agrobacterium tumefaciens. FEMS Microbiol Lett. 179:37-42.
    • (1999) FEMS Microbiol Lett. , vol.179 , pp. 37-42
    • Tang, X.1    Lu, B.F.2    Pan, S.Q.3
  • 81
    • 31644444476 scopus 로고    scopus 로고
    • MaGe: A microbial genome annotation system supported by synteny results
    • Vallenet D, et al. 2006. MaGe: a microbial genome annotation system supported by synteny results. Nucleic Acids Res. 34:53-65.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 53-65
    • Vallenet, D.1
  • 82
    • 84908096911 scopus 로고    scopus 로고
    • MicroScope: A platform for microbial genome annotation and comparative genomics
    • Vallenet D, et al. 2009. MicroScope: a platform for microbial genome annotation and comparative genomics. Database (Oxford) 2009: bap021.
    • (2009) Database (Oxford) , vol.2009
    • Vallenet, D.1
  • 85
    • 58849166475 scopus 로고    scopus 로고
    • Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data
    • Weiss S, et al. 2009. Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data. Biochimie 91:192-203.
    • (2009) Biochimie , vol.91 , pp. 192-203
    • Weiss, S.1
  • 86
    • 70349932972 scopus 로고    scopus 로고
    • Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation
    • Wilkins MJ, et al. 2009. Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Appl Environ Microbiol. 75:6591-6599.
    • (2009) Appl Environ Microbiol. , vol.75 , pp. 6591-6599
    • Wilkins, M.J.1
  • 87
    • 0035861496 scopus 로고    scopus 로고
    • The genome of the natural genetic engineer Agrobacterium tumefaciens C58
    • Wood DW, et al. 2001. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Science 294:2317-2323.
    • (2001) Science , vol.294 , pp. 2317-2323
    • Wood, D.W.1
  • 88
    • 0035151030 scopus 로고    scopus 로고
    • A revision of rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R rhizogenes, R rubi, R undicola and R vitis
    • Young JM, Kuykendall LD, Martínez-Romero E, Kerr A, Sawada H. 2001. A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis. Int J Syst Evol Microbiol. 51:89-103.
    • (2001) Int J Syst Evol Microbiol. , vol.51 , pp. 89-103
    • Young, J.M.1    Kuykendall, L.D.2    Martínez-Romero, E.3    Kerr, A.4    Sawada, H.5
  • 89
    • 33745094990 scopus 로고    scopus 로고
    • The genome of Rhizobium leguminosarum has recognizable core and accessory components
    • Young J P W, et al. 2006. The genome of Rhizobium leguminosarum has recognizable core and accessory components. Genome Biol. 7:R34.
    • (2006) Genome Biol. , vol.7
    • Young, J.P.W.1
  • 90
    • 0034943657 scopus 로고    scopus 로고
    • Computation-directed identification of OxyR DNA binding sites in Escherichia coli
    • Zheng M, et al. 2001. Computation-directed identification of OxyR DNA binding sites in Escherichia coli. J Bacteriol. 183:4571-4579.
    • (2001) J Bacteriol. , vol.183 , pp. 4571-4579
    • Zheng, M.1
  • 91
    • 0038739506 scopus 로고    scopus 로고
    • Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b
    • Zhong Z, et al. 2003. Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b. Plasmid 49:233-252.
    • (2003) Plasmid , vol.49 , pp. 233-252
    • Zhong, Z.1
  • 92
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft WG. 1997. Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev. 61:533-616.
    • (1997) Microbiol Mol Biol Rev. , vol.61 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.