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Volumn 69, Issue 4, 2014, Pages 457-466

Diversity of prokaryotic community at a shallow marine hydrothermal site elucidated by illumina sequencing technology

Author keywords

[No Author keywords available]

Indexed keywords

DNA; SEA WATER;

EID: 84926619741     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-014-0609-5     Document Type: Article
Times cited : (36)

References (53)
  • 2
    • 0037861947 scopus 로고    scopus 로고
    • Palaeococcus helgesonii sp. nov., a facultatively anaerobic, hyperthermophilic archaeon from a geothermal well on Vulcano Island, Italy
    • Amend JP, Meyer-Dombard DR, Sheth SN, Zolotova N, Amend AC (2003) Palaeococcus helgesonii sp. nov., a facultatively anaerobic, hyperthermophilic archaeon from a geothermal well on Vulcano Island, Italy. Arch Microbiol 179: 394-401
    • (2003) Arch Microbiol , vol.179 , pp. 394-401
    • Amend, J.P.1    Meyer-Dombard, D.R.2    Sheth, S.N.3    Zolotova, N.4    Amend, A.C.5
  • 3
    • 34248225741 scopus 로고    scopus 로고
    • Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum
    • Barns SM, Cain EC, Sommerville L, Kuske CR (2007) Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl Environ Microbiol 73: 3113-3116
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3113-3116
    • Barns, S.M.1    Cain, E.C.2    Sommerville, L.3    Kuske, C.R.4
  • 4
    • 79961081161 scopus 로고    scopus 로고
    • Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads
    • Bartram AK, Lynch MDJ, Stearns JC, Moreno-Hagelsieb G, Neufeld JD (2011) Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads. Appl Environ Microbiol 77: 3846-3852
    • (2011) Appl Environ Microbiol , vol.77 , pp. 3846-3852
    • Bartram, A.K.1    Lynch, M.D.J.2    Stearns, J.C.3    Moreno-Hagelsieb, G.4    Neufeld, J.D.5
  • 5
    • 33646827488 scopus 로고    scopus 로고
    • The versatile epsilon-Proteobacteria: Key players in sulphidic habitats
    • Campbell BJ, Engel AS, Porter ML, Takai K (2006) The versatile epsilon-Proteobacteria: key players in sulphidic habitats. Nat Rev Microbiol 4: 458-468
    • (2006) Nat Rev Microbiol , vol.4 , pp. 458-468
    • Campbell, B.J.1    Engel, A.S.2    Porter, M.L.3    Takai, K.4
  • 9
    • 1342313706 scopus 로고    scopus 로고
    • Oceans of Archaea
    • DeLong EF (2003) Oceans of Archaea. ASM News 69: 503-511
    • (2003) ASM News , vol.69 , pp. 503-511
    • DeLong, E.F.1
  • 10
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics. doi: 10. 1093/bioinformatics/ btq461
    • (2010) Bioinformatics
    • Edgar, R.C.1
  • 11
    • 0001142734 scopus 로고
    • Staphylothermus marinus sp. nov., represents a novel genus of extremely thermophilic submarine heterotrophic archaebacteria growing up to 98_C
    • Fiala G, Stetter KO, Jannasch HW, Langworthy TA, Madon J (1986) Staphylothermus marinus sp. nov., represents a novel genus of extremely thermophilic submarine heterotrophic archaebacteria growing up to 98_C. Syst Appl Microbiol 8: 106-113
    • (1986) Syst Appl Microbiol , vol.8 , pp. 106-113
    • Fiala, G.1    Stetter, K.O.2    Jannasch, H.W.3    Langworthy, T.A.4    Madon, J.5
  • 13
    • 84885363759 scopus 로고    scopus 로고
    • Diversity and phylogenetic analyses of bacteria from a shallow-water hydrothermal vent in Milos island (Greece)
    • Giovannelli D, d’Errico G, Manini E, Yakimov M, Vetriani C (2013) Diversity and phylogenetic analyses of bacteria from a shallow-water hydrothermal vent in Milos island (Greece). Front Microbiol. doi: 10. 3389/fmicb. 2013. 00184
    • (2013) Front Microbiol
    • Giovannelli, D.1    d’Errico, G.2    Manini, E.3    Yakimov, M.4    Vetriani, C.5
  • 15
    • 0033065172 scopus 로고    scopus 로고
    • Submarine hydrothermal vents of the Eolian Islands: Relationship between microbial communities and thermal fluids
    • Gugliandolo C, Italiano F, Maugeri TL, Inguaggiato S, Caccamo D, Amend JP (1999) Submarine hydrothermal vents of the Eolian Islands: relationship between microbial communities and thermal fluids. Geomicrobiol J 16: 105-117
    • (1999) Geomicrobiol J , vol.16 , pp. 105-117
    • Gugliandolo, C.1    Italiano, F.2    Maugeri, T.L.3    Inguaggiato, S.4    Caccamo, D.5    Amend, J.P.6
  • 16
    • 33846658960 scopus 로고    scopus 로고
    • The submarine hydrothermal system of Panarea (Southern Italy): Biogeochemical processes at the thermal fluids-sea bottom interface
    • Gugliandolo C, Italiano F, Maugeri TL (2006) The submarine hydrothermal system of Panarea (Southern Italy): biogeochemical processes at the thermal fluids-sea bottom interface. Ann Geophys 49: 783-792
    • (2006) Ann Geophys , vol.49 , pp. 783-792
    • Gugliandolo, C.1    Italiano, F.2    Maugeri, T.L.3
  • 17
    • 84860841411 scopus 로고    scopus 로고
    • New bacilli from shallow hydrothermal vents of Panarea Island (Italy) and their biotechnological potentialities
    • Gugliandolo C, Lentini V, Spanò A, Maugeri TL (2012) New bacilli from shallow hydrothermal vents of Panarea Island (Italy) and their biotechnological potentialities. J Appl Microbiol 112: 1102-1112
    • (2012) J Appl Microbiol , vol.112 , pp. 1102-1112
    • Gugliandolo, C.1    Lentini, V.2    Spanò, A.3    Maugeri, T.L.4
  • 18
    • 76749159925 scopus 로고    scopus 로고
    • Investigation and modeling of the geochemical processes in the hydrothermal system of Panarea, Italy
    • Hamel M (2010) Investigation and modeling of the geochemical processes in the hydrothermal system of Panarea, Italy. FOG-Freiberg Online Geoscience 25: 1-115
    • (2010) FOG-Freiberg Online Geoscience , vol.25 , pp. 1-115
    • Hamel, M.1
  • 19
    • 0031842162 scopus 로고    scopus 로고
    • Biased 16S rDNA PCR amplification caused by interference from DNA flanking template region
    • Hansen MC, Tolker-Neilson T, Givskov M, Molin S (1998) Biased 16S rDNA PCR amplification caused by interference from DNA flanking template region. FEMS Microbiol Ecol 26: 141-149
    • (1998) FEMS Microbiol Ecol , vol.26 , pp. 141-149
    • Hansen, M.C.1    Tolker-Neilson, T.2    Givskov, M.3    Molin, S.4
  • 20
    • 38449095881 scopus 로고    scopus 로고
    • Culture-dependent and-independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a Coral Reef off Taketomi Island, Japan
    • Hirayama H, Sunamura M, Takai K, Nunoura T, Noguchi T, Oida H, Furushima Y, Yamamoto H et al (2007) Culture-dependent and-independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a Coral Reef off Taketomi Island, Japan. Appl Environ Microbiol 73: 7642-7656
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7642-7656
    • Hirayama, H.1    Sunamura, M.2    Takai, K.3    Nunoura, T.4    Noguchi, T.5    Oida, H.6    Furushima, Y.7    Yamamoto, H.8
  • 21
    • 0037375056 scopus 로고    scopus 로고
    • Bacterial diversity in a subsea floor habitat following a deep-sea volcanic eruption
    • Huber JA, Butterfield DA, Baross JA (2003) Bacterial diversity in a subsea floor habitat following a deep-sea volcanic eruption. FEMS Microbiol Ecol 43: 393-409
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 393-409
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 23
    • 0345328152 scopus 로고    scopus 로고
    • Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
    • Inagaki F, Takai K, Kobayashi H, Nealson KH, Horikoshi K (2003) Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 53: 1801-1805
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1801-1805
    • Inagaki, F.1    Takai, K.2    Kobayashi, H.3    Nealson, K.H.4    Horikoshi, K.5
  • 24
    • 68149161316 scopus 로고    scopus 로고
    • Hydrothermal fluids vented at shallow depths at the Aeolian islands: Relationships with volcanic and geothermal systems
    • Italiano F (2009) Hydrothermal fluids vented at shallow depths at the Aeolian islands: relationships with volcanic and geothermal systems. FOG-Freiberg Online Geoscience 22: 55-60
    • (2009) FOG-Freiberg Online Geoscience , vol.22 , pp. 55-60
    • Italiano, F.1
  • 25
    • 0026003488 scopus 로고
    • Geochemical investigations of submarine volcanic exhalations to the East of Panarea, Eolian Islands, Italy
    • Italiano F, Nuccio PM (1991) Geochemical investigations of submarine volcanic exhalations to the East of Panarea, Eolian Islands, Italy. J Volcanol Geotherm Res 46: 125-141
    • (1991) J Volcanol Geotherm Res , vol.46 , pp. 125-141
    • Italiano, F.1    Nuccio, P.M.2
  • 26
    • 35349014219 scopus 로고    scopus 로고
    • Identification of enzyme-producing thermophilic bacilli isolated from marine vents of Aeolian Islands (Italy)
    • Lentini V, Gugliandolo C, Maugeri TL (2007) Identification of enzyme-producing thermophilic bacilli isolated from marine vents of Aeolian Islands (Italy). Ann Microbiol 57: 355-361
    • (2007) Ann Microbiol , vol.57 , pp. 355-361
    • Lentini, V.1    Gugliandolo, C.2    Maugeri, T.L.3
  • 27
    • 0141788252 scopus 로고    scopus 로고
    • Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge
    • Lopez-Garcia P, Duperron S, Philippot P, Foriel J, Susini J, Moreira D (2003) Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge. Environ Microbiol 5: 961-976
    • (2003) Environ Microbiol , vol.5 , pp. 961-976
    • Lopez-Garcia, P.1    Duperron, S.2    Philippot, P.3    Foriel, J.4    Susini, J.5    Moreira, D.6
  • 28
  • 29
    • 58149199586 scopus 로고    scopus 로고
    • Bacterial and archaeal populations at two shallow hydrothermal vents off Panarea Island (Eolian Islands, Italy)
    • Maugeri TL, Lentini V, Gugliandolo C, Italiano F, Cousin S, Stackebrandt E (2009) Bacterial and archaeal populations at two shallow hydrothermal vents off Panarea Island (Eolian Islands, Italy). Extremophiles 13: 199-212
    • (2009) Extremophiles , vol.13 , pp. 199-212
    • Maugeri, T.L.1    Lentini, V.2    Gugliandolo, C.3    Italiano, F.4    Cousin, S.5    Stackebrandt, E.6
  • 32
    • 84871325446 scopus 로고    scopus 로고
    • Abundance and diversity of picocyanobacteria in shallow hydrothermal vents of Panarea Island (Italy)
    • Maugeri TL, Lentini V, Spanò A, Gugliandolo C (2013) Abundance and diversity of picocyanobacteria in shallow hydrothermal vents of Panarea Island (Italy). Geomicrobiol J 30: 93-99
    • (2013) Geomicrobiol J , vol.30 , pp. 93-99
    • Maugeri, T.L.1    Lentini, V.2    Spanò, A.3    Gugliandolo, C.4
  • 33
    • 84892941395 scopus 로고    scopus 로고
    • Diversity of prokaryotes at a shallow submarine vent of Panarea Island (Italy) by high-throughput sequencing
    • Maugeri TL, Gugliandolo C, Lentini V (2013) Diversity of prokaryotes at a shallow submarine vent of Panarea Island (Italy) by high-throughput sequencing. AAPP/Atti Accad Pelorit Pericol Cl Sci Fis Mat Nat. doi: 10. 1478/AAPP. 912A1
    • (2013) AAPP/Atti Accad Pelorit Pericol Cl Sci Fis Mat Nat
    • Maugeri, T.L.1    Gugliandolo, C.2    Lentini, V.3
  • 34
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 35
    • 45149091572 scopus 로고    scopus 로고
    • Deep-sea vent chemoautotrophs: Diversity, biochemistry and ecological significance
    • Nakagawa S, Takai K (2008) Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65: 1-14
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 1-14
    • Nakagawa, S.1    Takai, K.2
  • 36
    • 59249092521 scopus 로고    scopus 로고
    • Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough
    • Nunoura T, Takai K (2009) Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough. FEMS Microbiol Ecol 67: 351-370
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 351-370
    • Nunoura, T.1    Takai, K.2
  • 37
    • 23744440986 scopus 로고    scopus 로고
    • Links between geographic location, environmental factors and microbial community composition in sediments of the Eastern Mediterranean Sea
    • Polymenakou PN, Bertilsson S, Tselepides A, Stephanou EG (2005) Links between geographic location, environmental factors and microbial community composition in sediments of the Eastern Mediterranean Sea. Microb Ecol 49: 367-378
    • (2005) Microb Ecol , vol.49 , pp. 367-378
    • Polymenakou, P.N.1    Bertilsson, S.2    Tselepides, A.3    Stephanou, E.G.4
  • 39
    • 0033823565 scopus 로고    scopus 로고
    • Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
    • Reysenbach AL, Longnecker K, Kirshtein J (2000) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Appl Environ Microbiol 66: 3798-3806
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3798-3806
    • Reysenbach, A.L.1    Longnecker, K.2    Kirshtein, J.3
  • 40
    • 33644824478 scopus 로고    scopus 로고
    • Archaeal diversity and geochemical energy yields in a geothermal well on Vulcano Island, Italy
    • Rogers KL, Amend JP (2005) Archaeal diversity and geochemical energy yields in a geothermal well on Vulcano Island, Italy. Geobiology 3: 319-332
    • (2005) Geobiology , vol.3 , pp. 319-332
    • Rogers, K.L.1    Amend, J.P.2
  • 42
    • 68149160340 scopus 로고    scopus 로고
    • Geochemical investigations and gas quantification of submarine fluid discharges in the hydrothermal system of Panarea (Aeolian Islands, Italy)
    • Sieland R, Steinbrückner D, Hamel M, Merkel B, Schipek M (2009) Geochemical investigations and gas quantification of submarine fluid discharges in the hydrothermal system of Panarea (Aeolian Islands, Italy). FOG-Freiberg Online Geoscience 22: 87-93
    • (2009) FOG-Freiberg Online Geoscience , vol.22 , pp. 87-93
    • Sieland, R.1    Steinbrückner, D.2    Hamel, M.3    Merkel, B.4    Schipek, M.5
  • 43
    • 0033931987 scopus 로고    scopus 로고
    • Identification of 16S ribosomal DNA defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece)
    • Sievert SM, Kuever J, Muyzer G (2000) Identification of 16S ribosomal DNA defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl Environ Microbiol 66: 3102-3109
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3102-3109
    • Sievert, S.M.1    Kuever, J.2    Muyzer, G.3
  • 45
    • 84878223237 scopus 로고    scopus 로고
    • A novel EPS-producing strain of Bacillus licheniformis isolated from a shallow vent off Panarea Island (Italy)
    • Spanò A, Gugliandolo C, Lentini V, Maugeri TL, Anzelmo G, Poli A, Nicolaus B (2013) A novel EPS-producing strain of Bacillus licheniformis isolated from a shallow vent off Panarea Island (Italy). Curr Microbiol 67: 212-219
    • (2013) Curr Microbiol , vol.67 , pp. 212-219
    • Spanò, A.1    Gugliandolo, C.2    Lentini, V.3    Maugeri, T.L.4    Anzelmo, G.5    Poli, A.6    Nicolaus, B.7
  • 46
    • 70349327515 scopus 로고    scopus 로고
    • Quantification of submarine degassing of Panarea Volcano in the Aeolian archipelago, Italy
    • Steinbrückner D (2009) Quantification of submarine degassing of Panarea Volcano in the Aeolian archipelago, Italy. FOG-Freiberg Online Geoscience 23: 1-113
    • (2009) FOG-Freiberg Online Geoscience , vol.23 , pp. 1-113
    • Steinbrückner, D.1
  • 47
    • 0034122502 scopus 로고    scopus 로고
    • Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney
    • Takai K, Sugai A, Itoh T, Horikoshi K (2000) Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney. Int J Syst Evol Microbiol 50: 489-500
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 489-500
    • Takai, K.1    Sugai, A.2    Itoh, T.3    Horikoshi, K.4
  • 48
    • 0037458176 scopus 로고    scopus 로고
    • Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields
    • Takai K, Inagaki F, Nakagawa S, Hirayama H, Nunoura T, Sako Y, Nealson KH, Horikoshi K (2003) Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields. FEMS Microbiol Lett 218: 167-174
    • (2003) FEMS Microbiol Lett , vol.218 , pp. 167-174
    • Takai, K.1    Inagaki, F.2    Nakagawa, S.3    Hirayama, H.4    Nunoura, T.5    Sako, Y.6    Nealson, K.H.7    Horikoshi, K.8
  • 49
    • 29544434789 scopus 로고    scopus 로고
    • Deep-sea and shallow-water hydrothermal vent communities: Two different phenomena?
    • Tarasov VG, Gebruk AV, Mironov AN, Moskalev LI (2005) Deep-sea and shallow-water hydrothermal vent communities: two different phenomena? Chem Geol 224: 5-39
    • (2005) Chem Geol , vol.224 , pp. 5-39
    • Tarasov, V.G.1    Gebruk, A.V.2    Mironov, A.N.3    Moskalev, L.I.4
  • 50
    • 58349111177 scopus 로고    scopus 로고
    • Low-pH waters discharging from submarine vents at Panarea Island (Aeolian Islands, southern Italy) after the 2002 gas blast: Origin of hydrothermal fluids and implications for volcanic surveillance
    • Tassi F, Capaccioni B, Caramanna G, Cinti D, Montegrossi G, Pizzino L, Quattrocchi F, Vaselli O (2009) Low-pH waters discharging from submarine vents at Panarea Island (Aeolian Islands, southern Italy) after the 2002 gas blast: origin of hydrothermal fluids and implications for volcanic surveillance. Appl Geochem 24: 246-254
    • (2009) Appl Geochem , vol.24 , pp. 246-254
    • Tassi, F.1    Capaccioni, B.2    Caramanna, G.3    Cinti, D.4    Montegrossi, G.5    Pizzino, L.6    Quattrocchi, F.7    Vaselli, O.8
  • 51
    • 77950403672 scopus 로고    scopus 로고
    • Deep-sea hydrothermal vents: Potential hot spots for natural products discovery?
    • Thornburg CC, Zabriskie TM, McPhail KL (2010) Deep-sea hydrothermal vents: potential hot spots for natural products discovery? J Nat Prod 73: 489-499
    • (2010) J Nat Prod , vol.73 , pp. 489-499
    • Thornburg, C.C.1    Zabriskie, T.M.2    McPhail, K.L.3
  • 52
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian Classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang QG, Garrity M, Tiedje JM, Cole JR (2007) Naïve Bayesian Classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.G.1    Garrity, M.2    Tiedje, J.M.3    Cole, J.R.4
  • 53
    • 84866092416 scopus 로고    scopus 로고
    • Sulfur metabolizing microbes dominate microbial communities in and esite-hosted shallow-sea hydrothermal systems
    • Zhang Y, Zhao Z, Chen C-TA, Tang K, Su J, Jiao N (2012) Sulfur metabolizing microbes dominate microbial communities in and esite-hosted shallow-sea hydrothermal systems. PLoS ONE 7: e44593
    • (2012) PLoS ONE , vol.7
    • Zhang, Y.1    Zhao, Z.2    Chen, C.-T.A.3    Tang, K.4    Su, J.5    Jiao, N.6


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