-
1
-
-
0036022478
-
Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent
-
Alain K, Querellou J, Lesongeur F, Pignet P, Crassous P, Raguenes G, Cueff V, Cambon-Bonavita MA (2002) Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent. International Journal of Systematic and Evolutionary Microbiology 52, 1317-1323.
-
(2002)
International Journal of Systematic and Evolutionary Microbiology
, vol.52
, pp. 1317-1323
-
-
Alain, K.1
Querellou, J.2
Lesongeur, F.3
Pignet, P.4
Crassous, P.5
Raguenes, G.6
Cueff, V.7
Cambon-Bonavita, M.A.8
-
3
-
-
33646827488
-
The versatile epsilon-proteobacteria: key players in sulphidic habitats
-
Campbell BJ, Engel AS, Porter ML, Takai K (2006) The versatile epsilon-proteobacteria: key players in sulphidic habitats. Nature Reviews Microbiology 4, 458-468.
-
(2006)
Nature Reviews Microbiology
, vol.4
, pp. 458-468
-
-
Campbell, B.J.1
Engel, A.S.2
Porter, M.L.3
Takai, K.4
-
4
-
-
84862795145
-
-
PRIMER v6: User manual/tutorial. PRIMER-E, Plymouth, UK.
-
Clarke KR, Gorley RN (2006) PRIMER v6: User manual/tutorial. PRIMER-E, Plymouth, UK.
-
(2006)
-
-
Clarke, K.R.1
Gorley, R.N.2
-
5
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Research 37, D141-D145.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
7
-
-
0035909781
-
Epsilon-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
-
Corre E, Reysenbach AL, Prieur D (2001) Epsilon-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. FEMS Microbiology Letters 205, 329-335.
-
(2001)
FEMS Microbiology Letters
, vol.205
, pp. 329-335
-
-
Corre, E.1
Reysenbach, A.L.2
Prieur, D.3
-
8
-
-
45849112155
-
A korarchaeal genome reveals insights into the evolution of the Archaea
-
Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M, Stetter KO (2008) A korarchaeal genome reveals insights into the evolution of the Archaea. Proceedings of the National Academy of Sciences of the USA 105, 8102-8107.
-
(2008)
Proceedings of the National Academy of Sciences of the USA
, vol.105
, pp. 8102-8107
-
-
Elkins, J.G.1
Podar, M.2
Graham, D.E.3
Makarova, K.S.4
Wolf, Y.5
Randau, L.6
Hedlund, B.P.7
Brochier-Armanet, C.8
Kunin, V.9
Anderson, I.10
Lapidus, A.11
Goltsman, E.12
Barry, K.13
Koonin, E.V.14
Hugenholtz, P.15
Kyrpides, N.16
Wanner, G.17
Richardson, P.18
Keller, M.19
Stetter, K.O.20
more..
-
9
-
-
72249106123
-
Variable morphologic expression of volcanic, tectonic, and hydrothermal processes at six hydrothermal vent fields in the Lau back-arc basin
-
Ferrini V, Tivey M, Carbotte S, Martinez F, Roman C (2008) Variable morphologic expression of volcanic, tectonic, and hydrothermal processes at six hydrothermal vent fields in the Lau back-arc basin. Geochemistry Geophysics Geosystems 9, Q07022.
-
(2008)
Geochemistry Geophysics Geosystems
, vol.9
-
-
Ferrini, V.1
Tivey, M.2
Carbotte, S.3
Martinez, F.4
Roman, C.5
-
10
-
-
79961169429
-
Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge
-
Flores GE, Campbell JH, Kirshtein JD, Meneghin J, Podar M, Steinberg JI, Seewald JS, Tivey MK, Voytek MA, Yang ZK, Reysenbach AL (2011a) Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge. Environmental Microbiology 13, 2158-2171.
-
(2011)
Environmental Microbiology
, vol.13
, pp. 2158-2171
-
-
Flores, G.E.1
Campbell, J.H.2
Kirshtein, J.D.3
Meneghin, J.4
Podar, M.5
Steinberg, J.I.6
Seewald, J.S.7
Tivey, M.K.8
Voytek, M.A.9
Yang, Z.K.10
Reysenbach, A.L.11
-
11
-
-
84857254490
-
Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits
-
Flores GE, Hunter RC, Liu Y, Mets A, Schouten S, Reysenbach AL (2011b) Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits. International Journal of Systematic and Evolutionary Microbiology doi:.
-
(2011)
International Journal of Systematic and Evolutionary Microbiology
-
-
Flores, G.E.1
Hunter, R.C.2
Liu, Y.3
Mets, A.4
Schouten, S.5
Reysenbach, A.L.6
-
12
-
-
84951269823
-
Unique geochemistry of submarine hydrothermal fluids from arc-back-arc settings of the western Pacific
-
(eds Christie DM, Fisher CR, Lee S-M, Givens S), American Geophysical Union, Washington, DC
-
Gamo T, Ishibashi J, Tsunogai U, Okamura K, Chiba H (2006) Unique geochemistry of submarine hydrothermal fluids from arc-back-arc settings of the western Pacific. In Back-Arc Spreading Systems: Geological, Biological, Chemical, and Physical Interactions (eds Christie DM, Fisher CR, Lee S-M, Givens S), American Geophysical Union, Washington, DC, 147-161.
-
(2006)
Back-Arc Spreading Systems: Geological, Biological, Chemical, and Physical Interactions
, pp. 147-161
-
-
Gamo, T.1
Ishibashi, J.2
Tsunogai, U.3
Okamura, K.4
Chiba, H.5
-
13
-
-
0036022488
-
Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents
-
Götz D, Banta A, Beveridge TJ, Rushdi AI, Simoneit BR, Reysenbach AL (2002) Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents. International Journal of Systematic and Evolutionary Microbiology 52, 1349-1359.
-
(2002)
International Journal of Systematic and Evolutionary Microbiology
, vol.52
, pp. 1349-1359
-
-
Götz, D.1
Banta, A.2
Beveridge, T.J.3
Rushdi, A.I.4
Simoneit, B.R.5
Reysenbach, A.L.6
-
14
-
-
73449128271
-
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R (2010) Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME Journal 4, 17-27.
-
(2010)
ISME Journal
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
15
-
-
77955237112
-
Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts
-
Huber JA, Cantin HV, Huse SM, Welch DB, Sogin ML, Butterfield DA (2010) Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts. FEMS Microbiology Ecology 73, 538-549.
-
(2010)
FEMS Microbiology Ecology
, vol.73
, pp. 538-549
-
-
Huber, J.A.1
Cantin, H.V.2
Huse, S.M.3
Welch, D.B.4
Sogin, M.L.5
Butterfield, D.A.6
-
16
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse S, Welch D, Morrison H, Sogin M (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental Microbiology 12, 1889-1898.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 1889-1898
-
-
Huse, S.1
Welch, D.2
Morrison, H.3
Sogin, M.4
-
17
-
-
55849119180
-
Exilispira thermophila gen. nov., sp. nov., an anaerobic, thermophilic spirochaete isolated from a deep-sea hydrothermal vent chimney
-
Imachi H, Sakai S, Hirayama H, Nakagawa S, Nunoura T, Takai K, Horikoshi K (2008) Exilispira thermophila gen. nov., sp. nov., an anaerobic, thermophilic spirochaete isolated from a deep-sea hydrothermal vent chimney. International Journal of Systematic and Evolutionary Microbiology 58, 2258-2265.
-
(2008)
International Journal of Systematic and Evolutionary Microbiology
, vol.58
, pp. 2258-2265
-
-
Imachi, H.1
Sakai, S.2
Hirayama, H.3
Nakagawa, S.4
Nunoura, T.5
Takai, K.6
Horikoshi, K.7
-
18
-
-
0345328152
-
Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
-
Inagaki F, Takai K, Kobayashi H, Nealson KH, Horikoshi K (2003) Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. International Journal of Systematic and Evolutionary Microbiology 53, 1801-1805.
-
(2003)
International Journal of Systematic and Evolutionary Microbiology
, vol.53
, pp. 1801-1805
-
-
Inagaki, F.1
Takai, K.2
Kobayashi, H.3
Nealson, K.H.4
Horikoshi, K.5
-
19
-
-
5444247841
-
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the epsilon-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
-
Inagaki F, Takai K, Nealson KH, Horikoshi K (2004) Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the epsilon-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. International Journal of Systematic and Evolutionary Microbiology 54, 1477-1482.
-
(2004)
International Journal of Systematic and Evolutionary Microbiology
, vol.54
, pp. 1477-1482
-
-
Inagaki, F.1
Takai, K.2
Nealson, K.H.3
Horikoshi, K.4
-
20
-
-
0041810237
-
Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines
-
Itoh T, Suzuki K, Sanchez P, Nakase T (2003) Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines. International Journal of Systematic and Evolutionary Microbiology 53, 1149-1154.
-
(2003)
International Journal of Systematic and Evolutionary Microbiology
, vol.53
, pp. 1149-1154
-
-
Itoh, T.1
Suzuki, K.2
Sanchez, P.3
Nakase, T.4
-
21
-
-
77951541709
-
Biogeography and biodiversity in sulfide structures of active and inactive vents at deep-sea hydrothermal fields of the Southern Mariana Trough
-
Kato S, Takano Y, Kakegawa T, Oba H, Inoue K, Kobayashi C, Utsumi M, Marumo K, Kobayashi K, Ito Y, Ishibashi J, Yamagishi A (2010) Biogeography and biodiversity in sulfide structures of active and inactive vents at deep-sea hydrothermal fields of the Southern Mariana Trough. Applied and Environment Microbiology 76, 2968-2979.
-
(2010)
Applied and Environment Microbiology
, vol.76
, pp. 2968-2979
-
-
Kato, S.1
Takano, Y.2
Kakegawa, T.3
Oba, H.4
Inoue, K.5
Kobayashi, C.6
Utsumi, M.7
Marumo, K.8
Kobayashi, K.9
Ito, Y.10
Ishibashi, J.11
Yamagishi, A.12
-
22
-
-
77956936499
-
2 production
-
2 production. Nature 467, 352-355.
-
(2010)
Nature
, vol.467
, pp. 352-355
-
-
Kim, Y.J.1
Lee, H.S.2
Kim, E.S.3
Bae, S.S.4
Lim, J.K.5
Matsumi, R.6
Lebedinsky, A.V.7
Sokolova, T.G.8
Kozhevnikova, D.A.9
Cha, S.S.10
-
23
-
-
33645454369
-
Bacterial and archaeal phylotypes associated with distinct mineralogical layers of a white smoker spire from a deep-sea hydrothermal vent site (9 degrees N, East Pacific Rise)
-
Kormas KA, Tivey MK, Von Damm K, Teske A (2006) Bacterial and archaeal phylotypes associated with distinct mineralogical layers of a white smoker spire from a deep-sea hydrothermal vent site (9 degrees N, East Pacific Rise). Environmental Microbiology 8, 909-920.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 909-920
-
-
Kormas, K.A.1
Tivey, M.K.2
Von Damm, K.3
Teske, A.4
-
24
-
-
55549124188
-
The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism
-
Lee HS, Kang SG, Bae SS, Lim JK, Cho Y, Kim YJ, Jeon JH, Cha SS, Kwon KK, Kim HT (2008) The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism. Journal of Bacteriology 190, 7491-7499.
-
(2008)
Journal of Bacteriology
, vol.190
, pp. 7491-7499
-
-
Lee, H.S.1
Kang, S.G.2
Bae, S.S.3
Lim, J.K.4
Cho, Y.5
Kim, Y.J.6
Jeon, J.H.7
Cha, S.S.8
Kwon, K.K.9
Kim, H.T.10
-
25
-
-
33748713890
-
UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M, Knight R (2006) UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7, 371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
26
-
-
33646511978
-
Opposing trends in crustal thickness and spreading rate along the back-arc Eastern Lau Spreading Center: implications for controls on ridge morphology, faulting, and hydrothermal activity
-
Martinez F, Taylor B, Baker ET, Resing JA, Walker SL (2006) Opposing trends in crustal thickness and spreading rate along the back-arc Eastern Lau Spreading Center: implications for controls on ridge morphology, faulting, and hydrothermal activity. Earth and Planetary Science Letters 245, 655-672.
-
(2006)
Earth and Planetary Science Letters
, vol.245
, pp. 655-672
-
-
Martinez, F.1
Taylor, B.2
Baker, E.T.3
Resing, J.A.4
Walker, S.L.5
-
27
-
-
60249095540
-
Back-arc basins
-
Martinez F, Okino K, Ohara Y, Reysenbach AL, Goffredi SK (2007) Back-arc basins. Oceanography 20, 116-127.
-
(2007)
Oceanography
, vol.20
, pp. 116-127
-
-
Martinez, F.1
Okino, K.2
Ohara, Y.3
Reysenbach, A.L.4
Goffredi, S.K.5
-
28
-
-
33644942487
-
Colonization of nascent, deep-sea hydrothermal vents by a novel Archaeal and Nanoarchaeal assemblage
-
McCliment EA, Voglesonger KM, O'Day PA, Dunn EE, Holloway JR, Cary SC (2006) Colonization of nascent, deep-sea hydrothermal vents by a novel Archaeal and Nanoarchaeal assemblage. Environmental Microbiology 8, 114-125.
-
(2006)
Environmental Microbiology
, vol.8
, pp. 114-125
-
-
McCliment, E.A.1
Voglesonger, K.M.2
O'Day, P.A.3
Dunn, E.E.4
Holloway, J.R.5
Cary, S.C.6
-
29
-
-
37749043727
-
Geochemical constraints on sources of metabolic energy for chemolithoautotrophy in ultramafic-hosted deep-sea hydrothermal systems
-
McCollom TM (2007) Geochemical constraints on sources of metabolic energy for chemolithoautotrophy in ultramafic-hosted deep-sea hydrothermal systems. Astrobiology 7, 933-950.
-
(2007)
Astrobiology
, vol.7
, pp. 933-950
-
-
McCollom, T.M.1
-
30
-
-
53549118607
-
The metagenomics RAST serve - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA (2008) The metagenomics RAST serve - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9, 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
Paczian, T.7
Rodriguez, A.8
Stevens, R.9
Wilke, A.10
Wilkening, J.11
Edwards, R.A.12
-
31
-
-
0842302336
-
Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal vent
-
Miroshnichenko ML, L'Haridon S, Schumann P, Spring S, Bonch-Osmolovskaya EA, Jeanthon C, Stackebrandt E (2004) Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal vent. International Journal of Systematic and Evolutionary Microbiology 54, 41-45.
-
(2004)
International Journal of Systematic and Evolutionary Microbiology
, vol.54
, pp. 41-45
-
-
Miroshnichenko, M.L.1
L'Haridon, S.2
Schumann, P.3
Spring, S.4
Bonch-Osmolovskaya, E.A.5
Jeanthon, C.6
Stackebrandt, E.7
-
32
-
-
78751702322
-
Chemistry of hot springs along the Eastern Lau Spreading Center
-
Mottl M, Seewald J, Wheat C, Tivey M, Michael P, Proskurowski G, McCollom TM, Reeves E, Sharkey J, You CF (2011) Chemistry of hot springs along the Eastern Lau Spreading Center. Geochimica et Cosmochimica Acta 75, 1013-1038.
-
(2011)
Geochimica et Cosmochimica Acta
, vol.75
, pp. 1013-1038
-
-
Mottl, M.1
Seewald, J.2
Wheat, C.3
Tivey, M.4
Michael, P.5
Proskurowski, G.6
McCollom, T.M.7
Reeves, E.8
Sharkey, J.9
You, C.F.10
-
33
-
-
16844381589
-
Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the epsilon-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough
-
Nakagawa S, Inagaki F, Takai K, Horikoshi K, Sako Y (2005a) Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the epsilon-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough. International Journal of Systematic and Evolutionary Microbiology 55, 599-605.
-
(2005)
International Journal of Systematic and Evolutionary Microbiology
, vol.55
, pp. 599-605
-
-
Nakagawa, S.1
Inagaki, F.2
Takai, K.3
Horikoshi, K.4
Sako, Y.5
-
34
-
-
23744451309
-
Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation
-
Nakagawa S, Takai K, Inagaki F, Chiba H, Ishibashi J, Kataoka S, Hirayama H, Nunoura T, Horikoshi K, Sako Y (2005b) Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation. FEMS Microbiology Ecology 54, 141-155.
-
(2005)
FEMS Microbiology Ecology
, vol.54
, pp. 141-155
-
-
Nakagawa, S.1
Takai, K.2
Inagaki, F.3
Chiba, H.4
Ishibashi, J.5
Kataoka, S.6
Hirayama, H.7
Nunoura, T.8
Horikoshi, K.9
Sako, Y.10
-
35
-
-
16844387103
-
Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the epsilon-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough
-
Nakagawa S, Takai K, Inagaki F, Horikoshi K, Sako Y (2005c) Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the epsilon-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough. International Journal of Systematic and Evolutionary Microbiology 55, 925-933.
-
(2005)
International Journal of Systematic and Evolutionary Microbiology
, vol.55
, pp. 925-933
-
-
Nakagawa, S.1
Takai, K.2
Inagaki, F.3
Horikoshi, K.4
Sako, Y.5
-
36
-
-
0038347385
-
Archaeal diversity associated with in situ samplers deployed on hydrothermal vents on the East Pacific Rise (13 degrees N)
-
Nercessian O, Reysenbach AL, Prieur D, Jeanthon C (2003) Archaeal diversity associated with in situ samplers deployed on hydrothermal vents on the East Pacific Rise (13 degrees N). Environmental Microbiology 5, 492-502.
-
(2003)
Environmental Microbiology
, vol.5
, pp. 492-502
-
-
Nercessian, O.1
Reysenbach, A.L.2
Prieur, D.3
Jeanthon, C.4
-
37
-
-
59249092521
-
Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough
-
Nunoura T, Takai K (2009) Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough. FEMS Microbiology Ecology 67, 351-370.
-
(2009)
FEMS Microbiology Ecology
, vol.67
, pp. 351-370
-
-
Nunoura, T.1
Takai, K.2
-
38
-
-
40949106450
-
Temporal and spatial archaeal colonization of hydrothermal vent deposits
-
Page A, Tivey MK, Stakes DS, Reysenbach AL (2008) Temporal and spatial archaeal colonization of hydrothermal vent deposits. Environmental Microbiology 10, 874-884.
-
(2008)
Environmental Microbiology
, vol.10
, pp. 874-884
-
-
Page, A.1
Tivey, M.K.2
Stakes, D.S.3
Reysenbach, A.L.4
-
39
-
-
34249999174
-
The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15 degrees N on the Mid-Atlantic Ridge
-
Perner M, Kuever J, Seifert R, Pape T, Koschinsky A, Schmidt K, Strauss H, Imhoff JF (2007) The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15 degrees N on the Mid-Atlantic Ridge. FEMS Microbiology Ecology 61, 97-109.
-
(2007)
FEMS Microbiology Ecology
, vol.61
, pp. 97-109
-
-
Perner, M.1
Kuever, J.2
Seifert, R.3
Pape, T.4
Koschinsky, A.5
Schmidt, K.6
Strauss, H.7
Imhoff, J.F.8
-
40
-
-
57049130376
-
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
-
Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, Fernandes F, Szeto E, Lapidus A, Kyrpides NC, Saier MH Jr, Richardson PM, Rachel R, Huber H, Eisen JA, Koonin EV, Keller M, Stetter KO (2008) A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biology 9, R158.
-
(2008)
Genome Biology
, vol.9
-
-
Podar, M.1
Anderson, I.2
Makarova, K.S.3
Elkins, J.G.4
Ivanova, N.5
Wall, M.A.6
Lykidis, A.7
Mavromatis, K.8
Sun, H.9
Hudson, M.E.10
Chen, W.11
Deciu, C.12
Hutchison, D.13
Eads, J.R.14
Anderson, A.15
Fernandes, F.16
Szeto, E.17
Lapidus, A.18
Kyrpides, N.C.19
Saier Jr., M.H.20
Richardson, P.M.21
Rachel, R.22
Huber, H.23
Eisen, J.A.24
Koonin, E.V.25
Keller, M.26
Stetter, K.O.27
more..
-
41
-
-
0034521788
-
Acidilobus aceticus gen. nov., sp. nov., a novel anaerobic thermoacidophilic archaeon from continental hot vents in Kamchatka
-
Prokofeva M, Miroshnichenko M, Kostrikina N, Chernyh N, Kuznetsov B, Tourova T, Bonch-Osmolovskaya EA (2000) Acidilobus aceticus gen. nov., sp. nov., a novel anaerobic thermoacidophilic archaeon from continental hot vents in Kamchatka. International Journal of Systematic and Evolutionary Microbiology 50, 2001.
-
(2000)
International Journal of Systematic and Evolutionary Microbiology
, vol.50
, pp. 2001
-
-
Prokofeva, M.1
Miroshnichenko, M.2
Kostrikina, N.3
Chernyh, N.4
Kuznetsov, B.5
Tourova, T.6
Bonch-Osmolovskaya, E.A.7
-
42
-
-
72149093242
-
Isolation of the anaerobic thermoacidophilic crenarchaeote Acidilobus saccharovorans sp. nov. and proposal of Acidilobales ord. nov., including Acidilobaceae fam. nov. and Caldisphaeraceae fam. nov
-
Prokofeva MI, Kostrikina NA, Kolganova TV, Tourova TP, Lysenko AM, Lebedinsky AV, Bonch-Osmolovskaya EA (2009) Isolation of the anaerobic thermoacidophilic crenarchaeote Acidilobus saccharovorans sp. nov. and proposal of Acidilobales ord. nov., including Acidilobaceae fam. nov. and Caldisphaeraceae fam. nov. International Journal of Systematic and Evolutionary Microbiology 59, 3116-3122.
-
(2009)
International Journal of Systematic and Evolutionary Microbiology
, vol.59
, pp. 3116-3122
-
-
Prokofeva, M.I.1
Kostrikina, N.A.2
Kolganova, T.V.3
Tourova, T.P.4
Lysenko, A.M.5
Lebedinsky, A.V.6
Bonch-Osmolovskaya, E.A.7
-
43
-
-
79251565226
-
Removing Noise From Pyrosequenced Amplicons
-
Quince C, Lanzen A, Davenport R, Turnbaugh P (2011) Removing Noise From Pyrosequenced Amplicons. BMC Bioinformatics 12, 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.3
Turnbaugh, P.4
-
44
-
-
0033823565
-
Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent
-
Reysenbach AL, Longnecker K, Kirshtein J (2000) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent. Applied and Environment Microbiology 66, 3798-3806.
-
(2000)
Applied and Environment Microbiology
, vol.66
, pp. 3798-3806
-
-
Reysenbach, A.L.1
Longnecker, K.2
Kirshtein, J.3
-
45
-
-
0012547949
-
Microbial diversity of marine and terrestrial thermal springs
-
(eds Staley JT, Reysenbach AL), Wiley-Liss Inc, New York
-
Reysenbach AL, Götz D, Yernool D (2002) Microbial diversity of marine and terrestrial thermal springs. In Biodiversity of Microbial Life (eds Staley JT, Reysenbach AL), Wiley-Liss Inc, New York, 345-421.
-
(2002)
Biodiversity of Microbial Life
, pp. 345-421
-
-
Reysenbach, A.L.1
Götz, D.2
Yernool, D.3
-
46
-
-
33747139434
-
A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents
-
Reysenbach AL, Liu Y, Banta AB, Beveridge TJ, Kirshtein JD, Schouten S, Tivey MK, Von Damm KL, Voytek MA (2006) A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature 442, 444-447.
-
(2006)
Nature
, vol.442
, pp. 444-447
-
-
Reysenbach, A.L.1
Liu, Y.2
Banta, A.B.3
Beveridge, T.J.4
Kirshtein, J.D.5
Schouten, S.6
Tivey, M.K.7
Von Damm, K.L.8
Voytek, M.A.9
-
47
-
-
79961170774
-
Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems
-
Roussel EG, Konn C, Charlou JL, Donval JP, Fouquet Y, Querellou J, Prieur D, Cambon Bonavita MA (2011) Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems. FEMS Microbiology Ecology 77, 647-665.
-
(2011)
FEMS Microbiology Ecology
, vol.77
, pp. 647-665
-
-
Roussel, E.G.1
Konn, C.2
Charlou, J.L.3
Donval, J.P.4
Fouquet, Y.5
Querellou, J.6
Prieur, D.7
Cambon Bonavita, M.A.8
-
48
-
-
0038654460
-
Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
-
Schrenk MO, Kelley DS, Delaney JR, Baross JA (2003) Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Applied and Environment Microbiology 69, 3580-3592.
-
(2003)
Applied and Environment Microbiology
, vol.69
, pp. 3580-3592
-
-
Schrenk, M.O.1
Kelley, D.S.2
Delaney, J.R.3
Baross, J.A.4
-
49
-
-
30944458200
-
Experimental investigation of single carbon compounds under hydrothermal conditions
-
Seewald JS, Zolotov MY, McCollom T (2006) Experimental investigation of single carbon compounds under hydrothermal conditions. Geochimica et Cosmochimica Acta 70, 446-460.
-
(2006)
Geochimica et Cosmochimica Acta
, vol.70
, pp. 446-460
-
-
Seewald, J.S.1
Zolotov, M.Y.2
McCollom, T.3
-
50
-
-
0036140315
-
A new gas-tight isobaric sampler for hydrothermal fluids
-
Seewlad JS, Doherty KW, Hammar TR, Liberatore SP (2002) A new gas-tight isobaric sampler for hydrothermal fluids. Deep-Sea Research 49, 189-196.
-
(2002)
Deep-Sea Research
, vol.49
, pp. 189-196
-
-
Seewlad, J.S.1
Doherty, K.W.2
Hammar, T.R.3
Liberatore, S.P.4
-
51
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki MT, Giovanonni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Applied and Environmental Microbiology 62, 625-630.
-
(1996)
Applied and Environmental Microbiology
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovanonni, S.J.2
-
52
-
-
0344035670
-
Genetic diversity of archaea in deep-sea hydrothermal vent environments
-
Takai K, Horikoshi K (1999) Genetic diversity of archaea in deep-sea hydrothermal vent environments. Genetics 152, 1285-1297.
-
(1999)
Genetics
, vol.152
, pp. 1285-1297
-
-
Takai, K.1
Horikoshi, K.2
-
53
-
-
0034111616
-
Thermosipho japonicus sp. nov., an extremely thermophilic bacterium isolated from a deep-sea hydrothermal vent in Japan
-
Takai K, Horikoshi K (2000) Thermosipho japonicus sp. nov., an extremely thermophilic bacterium isolated from a deep-sea hydrothermal vent in Japan. Extremophiles 4, 9-17.
-
(2000)
Extremophiles
, vol.4
, pp. 9-17
-
-
Takai, K.1
Horikoshi, K.2
-
54
-
-
84900041115
-
Compositional, physiological and metabolic variability in microbial communities associated with geochemically diverse, deep-sea hydrothermal vent fluids
-
(eds Barton LL, Mandl M, Loy A). Springer, the Netherlands
-
Takai K, Nakamura K (2010) Compositional, physiological and metabolic variability in microbial communities associated with geochemically diverse, deep-sea hydrothermal vent fluids. In Geomicrobiology: Molecular and Environmental Perspective (eds Barton LL, Mandl M, Loy A). Springer, the Netherlands, pp. 251-283.
-
(2010)
Geomicrobiology: Molecular and Environmental Perspective
, pp. 251-283
-
-
Takai, K.1
Nakamura, K.2
-
55
-
-
0034122502
-
Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney
-
Takai K, Sugai A, Itoh T, Horikoshi K (2000) Palaeococcus ferrophilus gen. nov., sp. nov., a barophilic, hyperthermophilic archaeon from a deep-sea hydrothermal vent chimney. International Journal of Systematic and Evolutionary Microbiology 50(Pt 2), 489-500.
-
(2000)
International Journal of Systematic and Evolutionary Microbiology
, vol.50
, Issue.PART 2
, pp. 489-500
-
-
Takai, K.1
Sugai, A.2
Itoh, T.3
Horikoshi, K.4
-
56
-
-
0035433956
-
Distribution of archaea in a black smoker chimney structure
-
Takai K, Komatsu T, Inagaki F, Horikoshi K (2001) Distribution of archaea in a black smoker chimney structure. Applied and Environment Microbiology 67, 3618-3629.
-
(2001)
Applied and Environment Microbiology
, vol.67
, pp. 3618-3629
-
-
Takai, K.1
Komatsu, T.2
Inagaki, F.3
Horikoshi, K.4
-
57
-
-
0036022415
-
Methanothermococcus okinawensis sp. nov., a thermophilic, methane-producing archaeon isolated from a Western Pacific deep-sea hydrothermal vent system
-
Takai K, Inoue A, Horikoshi K (2002) Methanothermococcus okinawensis sp. nov., a thermophilic, methane-producing archaeon isolated from a Western Pacific deep-sea hydrothermal vent system. International Journal of Systematic and Evolutionary Microbiology 52, 1089-1095.
-
(2002)
International Journal of Systematic and Evolutionary Microbiology
, vol.52
, pp. 1089-1095
-
-
Takai, K.1
Inoue, A.2
Horikoshi, K.3
-
58
-
-
0037458176
-
Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields
-
Takai K, Inagaki F, Nakagawa S, Hirayama H, Nunoura T, Sako Y, Nealson KH, Horikoshi K (2003) Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields. FEMS Microbiology Letters 218, 167-174.
-
(2003)
FEMS Microbiology Letters
, vol.218
, pp. 167-174
-
-
Takai, K.1
Inagaki, F.2
Nakagawa, S.3
Hirayama, H.4
Nunoura, T.5
Sako, Y.6
Nealson, K.H.7
Horikoshi, K.8
-
59
-
-
9744273114
-
Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana Arc, Western Pacific
-
Takai K, Hirayama H, Nakagawa T, Suzuki Y, Nealson KH, Horikoshi K (2004) Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera, Mariana Arc, Western Pacific. International Journal of Systematic and Evolutionary Microbiology 54, 2325-2333.
-
(2004)
International Journal of Systematic and Evolutionary Microbiology
, vol.54
, pp. 2325-2333
-
-
Takai, K.1
Hirayama, H.2
Nakagawa, T.3
Suzuki, Y.4
Nealson, K.H.5
Horikoshi, K.6
-
60
-
-
13244255659
-
Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal fumarole in the Mariana Arc
-
Takai K, Hirayama H, Nakagawa T, Suzuki Y, Nealson KH, Horikoshi K (2005) Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the 'Epsilonproteobacteria', isolated from a deep-sea hydrothermal fumarole in the Mariana Arc. International Journal of Systematic and Evolutionary Microbiology 55, 183-189.
-
(2005)
International Journal of Systematic and Evolutionary Microbiology
, vol.55
, pp. 183-189
-
-
Takai, K.1
Hirayama, H.2
Nakagawa, T.3
Suzuki, Y.4
Nealson, K.H.5
Horikoshi, K.6
-
61
-
-
33846815462
-
Ultramafics-Hydrothermalism-Hydrogenesis-HyperSLiME (UltraH3) linkage: a key insight into early microbial ecosystem in the Archean deep-sea hydrothermal systems
-
Takai K, Nakamura K, Suzuki K, Inagaki F, Nealson K, Kumagai H (2006) Ultramafics-Hydrothermalism-Hydrogenesis-HyperSLiME (UltraH3) linkage: a key insight into early microbial ecosystem in the Archean deep-sea hydrothermal systems. Paleontological Research 10, 269-282.
-
(2006)
Paleontological Research
, vol.10
, pp. 269-282
-
-
Takai, K.1
Nakamura, K.2
Suzuki, K.3
Inagaki, F.4
Nealson, K.5
Kumagai, H.6
-
62
-
-
51449085596
-
Variability in the microbial communities and hydrothermal fluid chemistry at the newly discovered Mariner hydrothermal field, southern Lau Basin
-
Takai K, Nunoura T, Ishibashi J, Lupton J, Suzuki R, Hamasaki H, Ueno Y, Kawagucci S, Gamo T, Suzuki Y (2008) Variability in the microbial communities and hydrothermal fluid chemistry at the newly discovered Mariner hydrothermal field, southern Lau Basin. Journal of Geophysical Research 113, G02031.
-
(2008)
Journal of Geophysical Research
, vol.113
-
-
Takai, K.1
Nunoura, T.2
Ishibashi, J.3
Lupton, J.4
Suzuki, R.5
Hamasaki, H.6
Ueno, Y.7
Kawagucci, S.8
Gamo, T.9
Suzuki, Y.10
-
63
-
-
85040217475
-
Environmental conditions within active seafloor vent structures: sensitivity to vent fluid composition and fluid flow
-
(eds Wilcock W, Cary C, DeLong E, Kelley D, Baross J), American Geophysical Union, Washington, DC
-
Tivey MK (2004) Environmental conditions within active seafloor vent structures: sensitivity to vent fluid composition and fluid flow. In Subseafloor Biosphere at Mid-Ocean Ridges (eds Wilcock W, Cary C, DeLong E, Kelley D, Baross J), American Geophysical Union, Washington, DC, 137-152.
-
(2004)
Subseafloor Biosphere at Mid-Ocean Ridges
, pp. 137-152
-
-
Tivey, M.K.1
-
64
-
-
34548709954
-
Generation of seafloor hydrothermal vent fluids and associated mineral deposits
-
Tivey MK (2007) Generation of seafloor hydrothermal vent fluids and associated mineral deposits. Oceanography 20, 50-65.
-
(2007)
Oceanography
, vol.20
, pp. 50-65
-
-
Tivey, M.K.1
-
65
-
-
84862780826
-
-
Characterization of six vent fields within the Lau Basin. American Geophysical Union, Fall meeting
-
Tivey MK, Craddock P, Seewald J, Ferrini V, Kim S, Mottl M, Sterling NA, Reysenbach AL, Wheat CG (2005) Characterization of six vent fields within the Lau Basin. American Geophysical Union, Fall meeting
-
(2005)
-
-
Tivey, M.K.1
Craddock, P.2
Seewald, J.3
Ferrini, V.4
Kim, S.5
Mottl, M.6
Sterling, N.A.7
Reysenbach, A.L.8
Wheat, C.G.9
-
66
-
-
84857314374
-
Links from mantle to microbe at the Lau Integrated Study Site: insights from a back-arc spreading center
-
Tivey MK, Becker E, Beinart R, Fisher CR, Girguis PR, Langmuir CH, Michael PJ, Reysenbach AL (2012) Links from mantle to microbe at the Lau Integrated Study Site: insights from a back-arc spreading center. Oceanography 25, 62-77.
-
(2012)
Oceanography
, vol.25
, pp. 62-77
-
-
Tivey, M.K.1
Becker, E.2
Beinart, R.3
Fisher, C.R.4
Girguis, P.R.5
Langmuir, C.H.6
Michael, P.J.7
Reysenbach, A.L.8
-
67
-
-
79952436439
-
Complete genome sequence of the hyperthermophilic piezophilic, heterotrophic and carboxydotrophic archaeon Thermococcus barophilus MP
-
Vannier P, Marteinsson VT, Fridjonsson OH, Oger P, Jebbar M (2011) Complete genome sequence of the hyperthermophilic piezophilic, heterotrophic and carboxydotrophic archaeon Thermococcus barophilus MP. Journal of Bacteriology 193, 1481-1482.
-
(2011)
Journal of Bacteriology
, vol.193
, pp. 1481-1482
-
-
Vannier, P.1
Marteinsson, V.T.2
Fridjonsson, O.H.3
Oger, P.4
Jebbar, M.5
-
68
-
-
16844386813
-
Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
-
Voordeckers JW, Starovoytov V, Vetriani C (2005) Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. International Journal of Systematic and Evolutionary Microbiology 55, 773-779.
-
(2005)
International Journal of Systematic and Evolutionary Microbiology
, vol.55
, pp. 773-779
-
-
Voordeckers, J.W.1
Starovoytov, V.2
Vetriani, C.3
-
69
-
-
51049089133
-
Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge
-
Voordeckers JW, Do MH, Hugler M, Ko V, Sievert SM, Vetriani C (2008) Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge. Extremophiles 12, 627-640.
-
(2008)
Extremophiles
, vol.12
, pp. 627-640
-
-
Voordeckers, J.W.1
Do, M.H.2
Hugler, M.3
Ko, V.4
Sievert, S.M.5
Vetriani, C.6
-
70
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environment Microbiology 73, 5261-5267.
-
(2007)
Applied and Environment Microbiology
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
71
-
-
68349117315
-
Microbial diversity of a sulfide black smoker in main endeavour hydrothermal vent field, Juan de Fuca Ridge
-
Zhou H, Li J, Peng X, Meng J, Wang F, Ai Y (2009) Microbial diversity of a sulfide black smoker in main endeavour hydrothermal vent field, Juan de Fuca Ridge. Journal of Microbiology 47, 235-247.
-
(2009)
Journal of Microbiology
, vol.47
, pp. 235-247
-
-
Zhou, H.1
Li, J.2
Peng, X.3
Meng, J.4
Wang, F.5
Ai, Y.6
-
72
-
-
67650763466
-
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea
-
Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guérin P, Dutertre M, Anthouard V, Forterre P, Wincker P, Confaloniere F (2009) Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea. Genome Biology 10, R70.
-
(2009)
Genome Biology
, vol.10
-
-
Zivanovic, Y.1
Armengaud, J.2
Lagorce, A.3
Leplat, C.4
Guérin, P.5
Dutertre, M.6
Anthouard, V.7
Forterre, P.8
Wincker, P.9
Confaloniere, F.10
|