Bacterial and archaeal populations at two shallow hydrothermal vents off Panarea Island (Eolian Islands, Italy)

Extremophiles

Volumn 13, Issue 1, 2009, Pages 199-212

  Maugeri, Teresa Luciana ^a   Lentini, Valeria ^a   Gugliandolo, Concetta ^a   Italiano, Francesco ^b   Cousin, Sylvie ^c   Stackebrandt, Erko ^c  

^a UNIVERSITY OF MESSINA   (Italy)

^b SEZIONE DI PALERMO   (Italy)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

Archaea; Bacteria; PCR DGGE; Prokaryote community; Shallow hydrothermal vents

Indexed keywords

BACTERIAL DNA;

ARCHAEBACTERIUM; ARTICLE; BACTERIUM; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; ITALY; MICROBIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION;

ARCHAEA; BACTERIA; DNA, BACTERIAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ITALY; POLYMERASE CHAIN REACTION; WATER MICROBIOLOGY;

ARCHAEA; BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 58149199586     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-008-0210-6     Document Type: Article

References (63)

1. K Alain M Zbinden N Le Bris F Lesongeur J Querellou F Gaill MA Cambon-Bonavita 2004 Early steps in microbial colonization processes at deep-sea hydrothermal vents Environ Microbiol 6 227 241
2. B Alexander JH Andersen RP Cox JF Imhoff 2002 Phylogeny of green sulphur bacteria on the basis of gene sequences of 16S rRNA and of the Fenna-Matthews-Olson protein Arch Microbiol 178 131 140
3. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
4. RI Amann W Ludwig K Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169
5. JP Amend KL Rogers EL Shock S Gurrieri S Inguaggiato 2003 Energetics of chemolithoautotrophy in the hydrothermal system of Vulcano Island, Southern Italy Geobiology 1 37 58
6. JP Amend DR Meyer-Dombard SN Sheth N Zolotova AC Amend 2003 Palaeococcus helgesonii sp. nov., a facultatively anaerobic, hyperthermophilic archaeon from a geothermal well on Vulcano Island, Italy Arch Microbiol 179 394 401
7. American Public Health Association (1969) Standard methods for the examination of water and wastewater, including bottom sediments and sludge. American Public Health Association, Washington DC, pp 604-609
8. D Caccamo C Gugliandolo E Stackebrandt TL Maugeri 2000 Bacillus vulcani sp. nov., a novel thermophilic species isolated from a shallow marine hydrothermal vent Int J Syst Evol Microbiol 50 2009 2012
9. D Caccamo TL Maugeri C Gugliandolo 2001 Identification of thermophilic and marine bacilli from shallow thermal vents by restriction analysis of their amplified 16S rDNA J Appl Microbiol 91 520 524
10. BJ Campbell AS Engel ML Porter K Takai 2006 The versatile epsilon-proteobacteria: key players in sulphidic habitats Nat Rev Microbiol 4 458 468
11. B Capaccioni F Tassi O Vaselli D Tedesco R Poreda 2007 Submarine gas burst at Panarea Island, southern Italy, on 3 November 2002: a magmatic versus hydrothermal episode J Geophys Res 112 B05201 10.1029/2006JB004359
12. G Capasso S Inguaggiato 1998 A simple method for the determination of dissolved gases in natural waters. An application to thermal waters from Vulcano island Appl Geochem 13 5 631 642
13. A Caracausi M Ditta F Italiano M Longo PM Nuccio A Paonita A Rizzo 2005 Changes in fluid geochemistry and physico-chemical conditions of geothermal systems caused by magmatic input: the recent abrupt outgassing off the island of Panarea (Aeolian Islands, Italy) Geochem Cosmochim Acta 69 3045 3059
14. EO Casamayor H Schäfer L Bañeras C Pedrós-Alió G Muyzer 2000 Identification of and spatio-temporal difference between microbial assemblages from two neighboring sulphur lakes: comparison by microscopy and denaturing gradient gel electrophoresis Appl Environ Microbiol 66 499 508
15. E Corre AL Reysenbach D Prieur 2001 Epsilon-proteobacterial diversity from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge FEMS Microbiol Lett 205 329 335
16. CJ Ehrhardt RM Haymon MG Lamontagne PA Holden 2007 Evidence for hydrothermal Archaea within the basaltic flanks of the East Pacific Rise Environ Microbiol 9 900 912
17. MJ Ferris G Muyzer DM Ward 1996 Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community Appl Environ Microbiol 62 340 346
18. G Fiala KO Stetter 1986 Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100°C Arch Microbiol 145 56 61
19. Garrity GM, Bell JA, Lilburn T (2005) Order V. Thiotrichales ord. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds) Bergey's manual of systematic bacteriology, (The Proteobacteria), part B (The Gammaproteobacteria), New York, Springer, p 131
20. K Glissman KJ Chin P Casper R Conrad 2004 Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: effect of temperature Microb Ecol 48 389 399
21. A Graff S Stubner 2003 Isolation and molecular characterization of thiosulphate-oxidizing bacteria from an Italian rice field soil Syst Appl Microbiol 26 445 452
22. C Gugliandolo TL Maugeri 1998 Temporal variations in heterotrophic mesophilic bacteria from a marine shallow hydrothermal vent off the Island of Vulcano (Eolian Islands, Italy) Microb Ecol 36 13 22
23. C Gugliandolo F Italiano TL Maugeri S Inguaggiato D Caccamo JP Amend 1999 Submarine hydrothermal vents of the Eolian Islands: relationship between microbial communities and thermal fluids Geomicrobiol J 16 105 117
24. C Gugliandolo TL Maugeri D Caccamo E Stackebrandt 2003 Bacillus aeolius sp. nov. a novel thermophilic, halophilic marine Bacillus species from Eolian Islands (Italy) Syst Appl Microbiol 26 172 176
25. 2+ at neutral pH under anoxic conditions Arch Microbiol 166 308 314
26. S Heising L Richter W Ludwig B Schink 1999 Chlorobium ferrooxidans sp. nov., a phototrophic green sulphur bacterium that oxidizes ferrous iron in coculture with a 'Geospirillum' sp. strain Arch Microbiol 172 116 124
27. H Hirayama M Sunamura K Takai T Nunoura T Noguchi H Oida Y Furushima H Yamamoto T Oomori K Horikoshi 2007 Culture-dependent and -independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a Coral Reef off Taketomi Island, Japan Appl Environ Microbiol 73 764 7656
28. H Huber KO Stetter 1989 Thiobacillus prosperus sp. nov., represents a new group of halotolerant metal-mobilizing bacteria isolated from a marine geothermal field Arch Microbiol 151 479 485
29. R Huber TA Langworthy H König M Thomm CR Woese UB Sleytr KO Stetter 1986 Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C Arch Microbiol 144 324 333
30. F Italiano PM Nuccio 1991 Geochemical investigations of submarine volcanic exhalations to the East of Panarea, Eolian Islands, Italy J Volcanol Geotherm Res 46 125 141
31. A Kielak AS Pijl JA van Veen GA Kowalchuk 2008 Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field FEMS Microbiol Ecol 63 372 382
32. Y Kodama K Watanabe 2003 Isolation and characterization of a sulphur-oxidizing chemolithotroph growing on crude oil under anaerobic conditions Appl Environ Microbiol 69 107 112
33. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M, Wiley J, Sons LDT (eds) Nucleic acid techniques in bacterial systematics. West Sussex, UK, pp 115-175
34. E Manini GM Luna C Corinaldesi D Zeppilli G Bortoluzzi G Caramanna F Raffa R Danovaro 2008 Prokaryote diversity and virus abundance in shallow hydrothermal vents of the Mediterranean Sea (Panarea Island) and the Pacific Ocean (North Sulawesi-Indonesia) Microb Ecol 55 626 639
35. Maugeri TL, Acosta Pomar MLC, Bruni V (1990) Picoplancton. In: Innamorati M, Ferrari I, Marino D, Ribera D'Alcalà M (eds) Metodi per lo studio del plancton marino. Nova Thalassia Lint Trieste, Italy, pp 199-205
36. TL Maugeri C Gugliandolo D Caccamo E Stackebrandt 2001 A polyphasic taxonomic study of thermophilic bacilli from shallow, marine vents Syst Appl Microbiol 24 572 587
37. TL Maugeri C Gugliandolo D Caccamo E Stackebrandt 2002 Three novel halotolerant and thermophilic Geobacillus strains from shallow marine vents Syst Appl Microbiol 25 450 455
38. TR Miller MP Franklin RU Halden 2007 Bacterial community analysis of shallow groundwater undergoing sequential anaerobic and aerobic chloroethane biotransformation FEMS Microbiol Ecol 60 299 311
39. HJ Mills RJ Martinez S Story PA Sobecky 2005 Characterization of microbial community structure in Gulf of Mexico gas hydrates: comparative analysis of DNA- and RNA-derived clone libraries Appl Environ Microbiol 71 3235 3247
40. G Muyzer 1999 DGGE/TGGE a method for identifying genes from natural ecosystems Curr Opin Microbiol 2 317 322
41. G Muyzer EC De Waal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700
42. Muyzer G, Hottenträger S, Teske A, Wawer C (1996) Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA-A new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Akkermans ADL, van Elsas JD, de Bruijn FJ (eds) Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, pp 1-23
43. S Nakagawa K Takai F Inagaki H Chiba J Ishibashi S Kataoka H Hirayama T Nunoura K Horikoshi Y Sako 2005 Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: impacts of subseafloor phase-separation FEMS Microbiol Ecol 54 141 155
44. A Page SK Juniper M Olagnon K Alain G Desrosiers J Querellou MA Cambon-Bonavita 2004 Microbial diversity associated with a Paralvinella sulfincola tube and the adjacent substratum on an active deep-sea vent chimney Geobiology 2 225 238
45. L Raskin JM Stromley BE Rittmann DA Stahl 1994 Group specific 16S rRNA hybridization probes to describe natural communities of methanogens Appl Environ Microbiol 60 1232 1240
46. KL Rogers JP Amend 2005 Archaeal diversity and geochemical energy yields in a geothermal well on Vulcano Island, Italy Geobiology 3 319 332
47. A Rusch JP Amend 2004 Order-specific 16S rRNA-targeted oligonucleotide probes for (hyper) thermophilic archaea and bacteria Extremophiles 8 357 366
48. A Rusch E Walpersdorf D deBeer S Gurrieri JP Amend 2005 Microbial communities near the oxic/anoxic interface in the hydrothermal system of Vulcano Island, Italy Chem Geol 224 169 182
49. SM Sievert T Brinkhoff G Muyzer W Ziebis J Kuever 1999 Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece) Appl Environ Microbiol 65 3834 3842
50. SM Sievert J Kuever G Muyzer 2000 Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece) Appl Environ Microbiol 66 3102 3109
51. SM Sievert KM Scott MG Klotz PS Chain LJ Hauser J Hemp M Hugler M Land A Lapidus FW Larimer S Lucas SA Malfatti F Meyer IT Paulsen Q Ren J Simon 2008 Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans Appl Environ Microbiol 74 1145 1156
52. A Skoog P Vlahos KL Rogers JP Amend 2007 Concentrations, distributions, and energy yields of dissolved neutrals aldoles in a shallow hydrothermal vent system of Vulcano, Italy Org Geochem 38 1416 1430
53. Stahl DA, Amann RI (1991) Development and application of nucleic acid probes. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 205-248
54. KO Stetter 1988 Archaeoglobus fulgidus gen. nov., sp. nov. a new taxon of extremely thermophilic Archaebacteria Syst Appl Microbiol 10 172 173
55. KO Stetter H König E Stackebrandt 1983 Pyrodictium gen. nov., a new genus of submarine disc-shaped sulfur reducing Archaebacteria growing optimally at 105°C Syst Appl Microbiol 4 535 551
56. R Sugisaki K Taki 1987 Simplified analysis of He, Ne and Ar dissolved in natural waters Chem J 21 21 23
57. MT Suzuki O Beja LT Taylor EF Delong 2001 Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton Environ Microbiol 3 323 331
58. E Svensson A Skoog JP Amend 2004 Concentration and distribution of dissolved amino acids in a shallow hydrothermal system, Vulcano Island (Italy) Org Geochem 35 1001 1014
59. K Takai M Suzuki S Nakagawa M Miyazaki Y Suzuki F Inagaki K Horikoshi 2006 Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas Int J Syst Evol Microbiol 56 1725 1733
60. JH Tuttle HW Jannasch 1972 Occurrence and types of Thiobacillus-like Bacteria in the sea Limnol Oceanogr 32 591 607
61. K Van der Gucht K Sabbe L De Meester N Vloemans G Zwart M Gillis W Vyverman 2001 Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes Environ Microbiol 3 680 690
62. M Zaballos A Lopez-Lopez L Ovreas S Galan Bartual G D'Auria JC Alba B Legault R Pushker FL Daae F Rodriguez-Valera 2006 Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea FEMS Microbiol Ecol 56 389 405
63. G Zhang F Niu X Ma W Liu M Dong H Feng L An G Cheng 2007 Phylogenetic diversity of bacteria isolates from the Qinghai-Tibet Plateau permafrost region Can J Microbiol 53 1000 1010