Norovirus genotype diversity in community-based sporadic gastroenteritis incidents: A five-year study

Journal of Medical Virology

Volumn 87, Issue 6, 2015, Pages 961-969

  Bruggink, Leesa D ^a   Dunbar, Natalie L ^a   Marshall, John A ^a  

^a VICTORIAN INFECTIOUS DISEASES REFERENCE LABORATORY   (Australia)

Author keywords

ORF 1 genotypes; ORF 2 genotypes; Recombinants; Vaccination

Indexed keywords

ADOLESCENT; ADULT; AGED; ARTICLE; AUSTRALIA; CHILD; COMMUNITY; CONTROLLED STUDY; FOOD POISONING; GASTROENTERITIS; GENETIC VARIABILITY; GENOTYPE; GROUPS BY AGE; HUMAN; INCIDENCE; MAJOR CLINICAL STUDY; NOROVIRUS; NOROVIRUS GASTROENTERITIS; NOROVIRUS INFECTION; OPEN READING FRAME; PHYLOGENETIC TREE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RISK FACTOR; VIRUS RECOMBINANT; VIRUS STRAIN; CALICIVIRIDAE INFECTIONS; COMMUNITY-ACQUIRED INFECTIONS; DNA SEQUENCE; EPIDEMIC; FECES; FEMALE; GENETICS; INFANT; ISOLATION AND PURIFICATION; MALE; MIDDLE AGED; NEWBORN; PHYLOGENY; PRESCHOOL CHILD; REAL TIME POLYMERASE CHAIN REACTION; TIME; VIROLOGY; YOUNG ADULT;

NOROVIRUS;

VIRUS RNA;

ADOLESCENT; ADULT; AGED; CALICIVIRIDAE INFECTIONS; CHILD; CHILD, PRESCHOOL; COMMUNITY-ACQUIRED INFECTIONS; DISEASE OUTBREAKS; FECES; FEMALE; GASTROENTERITIS; GENETIC VARIATION; GENOTYPE; HUMANS; INCIDENCE; INFANT; INFANT, NEWBORN; MALE; MIDDLE AGED; NOROVIRUS; OPEN READING FRAMES; PHYLOGENY; REAL-TIME POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; TIME FACTORS; VICTORIA; YOUNG ADULT;

EID: 84926509482     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.24154     Document Type: Article

References (28)

1. Agresti A. 1990. Categorical data analysis. New York: John Wiley and Sons, Inc., pp 50-54.
2. Arana A, Cilla G, Montes M, Gomariz M, Perez-Trallero E. 2014. Genotypes, recombinant forms, and variants of norovirus GII.4 in Gipuzkoa (Basque Country, Spain), 2009-2012. PLoS ONE 9: e98875.
3. Atmar RL, Estes MK. 2012. Norovirus vaccine development: Next steps. Expert Rev Vaccines 11: 1023-1025.
4. Bok K, Green KY. 2012. Norovirus gastroenteritis in immuno-compromised patients. N Engl J Med 367: 2126-2132.
5. Bruggink LD, Dunbar NL, Marshall JA. 2014. Emergence of GII.e as a major ORF 1 norovirus genotype and its associated ORF 2 GII.4 variant forms. Infect Genet Evol 22: 157-163.
6. Bruggink LD, Marshall JA. 2009. Molecular and epidemiological features of GIIb norovirus outbreaks in Victoria, Australia, 2002-2005. J Med Virol 81: 1652-1660.
7. Bruggink LD, Marshall JA. 2010. The incidence of norovirus-associated gastroenteritis outbreaks in Victoria, Australia (2002-2007) and their relationship with rainfall. Int J Environ Res Public Health 7: 2822-2827.
8. Bruggink LD, Marshall JA. 2013. Altered patterns of norovirus GII.b recombinant forms in gastroenteritis outbreaks in Victoria, Australia, 2002-2005 compared to 2006-2011. J Med Virol 85: 1433-1443.
9. Bruggink LD, Oluwatoyin O, Sameer R, Witlox KJ, Marshall JA. 2012. Molecular and epidemiological features of gastroenteritis outbreaks involving genogroup I norovirus in Victoria, Australia, 2002-2010. J Med Virol 84: 1437-1448.
10. Bruggink L, Sameer R, Marshall J. 2010. Molecular and epidemiological characteristics of norovirus associated with community-based sporadic gastroenteritis incidents and norovirus outbreaks in Victoria, Australia, 2002-2007. Intervirology 53: 167-172.
11. Bruggink LD, Witlox KJ, Sameer R, Catton MG, Marshall JA. 2011. Evaluation of the RIDA®QUICK immunochromatographic norovirus detection assay using specimens from Australian gastroenteritis incidents. J Virol Methods 173: 121-126.
12. Bull RA, Tanaka MM, White PA. 2007. Norovirus recombination. J Gen Virol 88: 3347-3359.
13. Debbink K, Lindesmith LC, Donaldson EF, Baric RS. 2012. Norovirus immunity and the great escape. PLoS Pathog 8: e1002921.
14. Dunbar NL, Bruggink LD, Marshall JA. 2014. Evaluation of the RIDAGENE real-time PCR assay for the detection of GI and GII norovirus. Diagn Microbiol Infect Dis 79: 317-321.
15. Iritani N, Kaida A, Abe N, Sekiguchi J-i, Kubo H, Takakura K-I, Goto K, Ogura H, Seto Y. 2012. Increase of GII. 2 norovirus infections during the 2009-2010 season in Osaka City, Japan. J Med Virol 84: 517-525.
16. Kroneman A, Vega E, Vennema H, Vinje J, White PA, Hansman G, Green K, Martella V, Katayama K, Koopmans M. 2013. Proposal for a unified norovirus nomenclature and genotyping. Arch Virol 158: 2059-2068.
17. Kroneman A, Vennema H, Deforche K, Avoort Hvd, Penaranda S, Oberste MS, Vinje J, Koopmans M. 2011. An automated genotyping tool for enteroviruses and noroviruses. J Clin Virol 51: 121-125.
18. La Rosa G, Pourshaban M, Iaconelli M, Muscillo M. 2008. Detection of genogroup IV noroviruses in environmental and clinical samples and partial sequencing through rapid amplification of cDNA ends. Arch Virol 153: 2077-2083.
19. Marshall JA, Bruggink LD. 2006. Laboratory diagnosis of norovirus. Clin Lab 52: 571-581.
20. McIver CJ, Bull RA, Tu ETV, Rawlinson WD, White PA. 2005. Norovirus and Sapovirus. In: McIver CJ, editor. A compendium of laboratory diagnostic methods for common and unusual enteric pathogens-An Australian perspective. Melbourne: The Australian Society for Microbiology Inc., pp 191-198.
21. Sang S, Zhao Z, Suo J, Xing Y, Jia N, Gao Y, Xie L, Du M, Liu B, Ren S, Liu Y. 2014. Report of recombinant norovirus GII.g/GII.12 in Beijing, China. PLoS ONE 9: e88210.
22. Siebenga J, Kroneman A, Vennema H, Duizer E, Koopmans M. 2008. Food-borne viruses in Europe network report: The norovirus GII.4 2006b (for US named Minerva-like, for Japan Kobe034-like, for UK v6) variant now dominant in early seasonal surveillance. Euro Surveill 13: 1-4.
23. Thorne LG, Goodfellow IG. 2014. Norovirus gene expression and replication. J Gen Virol 95: 278-291.
24. Tsai C-N, Lin C-Y, Lin C-W, Shih K-C, Chiu C-H, Chen S-Y. 2014. Clinical relevance and genotypes of circulating noroviruses in northern Taiwan, 2006-2011. J Med Virol 86: 335-346.
25. Vinje J, Hamidjaja RA, Sobsey MD. 2004. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Methods 116: 109-117.
26. Witlox KJ, Nguyen TN, Bruggink LD, Catton MG, Marshall JA. 2008. A comparative evaluation of the sensitivity of two automated and two manual nucleic acid extraction methods for the detection of norovirus by RT-PCR. J Virol Methods 150: 70-72.
27. Witlox KJ, Karapanagiotidis T, Bruggink LD, Marshall JA. 2010. The effect of fecal turbidity on norovirus detection by reverse transcriptase polymerase chain reaction. Diag Microbiol Inf Dis 66: 230-232.
28. Yuen LKW, Catton MG, Cox BJ, Wright PJ, Marshall JA. 2001. Heminested multiplex reverse transcription-PCR for detection and differentiation of Norwalk-like virus genogroups 1 and 2 in fecal samples. J Clin Microbiol 39: 2690-2694.