Clinical relevance and genotypes of circulating noroviruses in northern Taiwan, 2006-2011

Journal of Medical Virology

Volumn 86, Issue 2, 2014, Pages 335-346

  Tsai, Chi Neu ^a   Lin, Chun Yuan ^a   Lin, Che Wei ^a   Shih, Kuei Chung ^b   Chiu, Cheng Hsun ^c,d   Chen, Shih Yen ^c  

^a CHANG GUNG UNIVERSITY   (Taiwan)

^b NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^c CHANG GUNG CHILDREN S HOSPITAL   (Taiwan)

^d CHANG GUNG MEMORIAL HOSPITAL   (Taiwan)

Author keywords

Acute gastroenteritis; GII.4 variant; Infant convulsion; Norovirus; Phylogenetic

Indexed keywords

CAPSID PROTEIN; RNA DIRECTED RNA POLYMERASE;

ACUTE GASTROENTERITIS; ADOLESCENT; AMINO ACID SUBSTITUTION; ARTICLE; CHILD; CLINICAL ARTICLE; CLINICAL FEATURE; DIARRHEA; DISEASE DURATION; ELECTROLYTE DISTURBANCE; GENE SEQUENCE; GENOTYPE; HUMAN; HYPOGLYCEMIA; INFANT; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; PHYLOGENY; TAIWAN; VIRUS GENE; VIRUS TYPING;

MIRIDAE; NOROVIRUS;

ACUTE GASTROENTERITIS; GII.4 VARIANT; INFANT CONVULSION; NOROVIRUS; PHYLOGENETIC;

ADOLESCENT; CALICIVIRIDAE INFECTIONS; CAPSID PROTEINS; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; FEMALE; GASTROENTERITIS; GENOTYPE; HUMANS; INFANT; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; NOROVIRUS; PHYLOGENY; RNA REPLICASE; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; TAIWAN;

EID: 84890192517     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23728     Document Type: Article

References (44)

1. Belliot G, Sosnovtsev SV, Mitra T, Hammer C, Garfield M, Green KY. 2003. In vitro proteolytic processing of the MD145 norovirus ORF1 nonstructural polyprotein yields stable precursors and products similar to those detected in calicivirus-infected cells. J Virol 77:10957-10974.
2. Belliot G, Sosnovtsev SV, Chang KO, Babu V, Uche U, Arnold JJ, Cameron CE, Green KY. 2005. Norovirus proteinase-polymerase and polymerase are both active forms of RNA-dependent RNA polymerase. J Virol 79:2393-2403.
3. Bok K, Abente EJ, Realpe-Quintero M, Mitra T, Sosnovtsev SV, Kapikian AZ, Green KY. 2009. Evolutionary dynamics of GII.4 noroviruses over a 34-year period. J Virol 83:11890-11901.
4. Bull RA, Tu ET, McIver CJ, Rawlinson WD, White PA. 2006. Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis. J Clin Microbiol 44:327-333.
5. Bull RA, Tanaka MM, White PA. 2007. Norovirus recombination. J Gen Virol 88:3347-3359.
6. Cao S, Lou Z, Tan M, Chen Y, Liu Y, Zhang Z, Zhang XC, Jiang X, Li X, Rao Z. 2007. Structural basis for the recognition of blood group trisaccharides by norovirus. J Virol 81:5949-5957.
7. Chen SM, Ni YH, Chen HL, Chang MH. 2006. Microbial etiology of acute gastroenteritis in hospitalized children in Taiwan. J Formos Med Assoc 105:964-970.
8. Chen SY, Chang YC, Lee YS, Chao HC, Tsao KC, Lin TY, Ko TY, Tsai CN, Chiu CH. 2007. Molecular epidemiology and clinical manifestations of viral gastroenteritis in hospitalized pediatric patients in Northern Taiwan. J Clin Microbiol 45:2054-2057.
9. Chen SY, Tsai CN, Chao HC, Lai MW, Lin TY, Ko TY, Chiu CH. 2009a. Acute gastroenteritis caused by multiple enteric pathogens in children. Epidemiol Infect 137:932-935.
10. Chen SY, Tsai CN, Lai MW, Chen CY, Lin KL, Lin TY, Chiu CH. 2009b. Norovirus infection as a cause of diarrhea-associated benign infantile seizures. Clin Infect Dis 48:849-855.
11. Eden JS, Bull RA, Tu E, McIver CJ, Lyon MJ, Marshall JA, Smith DW, Musto J, Rawlinson WD, White PA. 2010. Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008. J Clin Virol 49:265-271.
12. Fernandez-Vega V, Sosnovtsev SV, Belliot G, King AD, Mitra T, Gorbalenya A, Green KY. 2004. Norwalk virus N-terminal nonstructural protein is associated with disassembly of the Golgi complex in transfected cells. J Virol 78:4827-4837.
13. Glass RI, Parashar UD, Estes MK. 2009. Norovirus gastroenteritis. N Engl J Med 361:1776-1785.
14. Han TH, Kim CH, Chung JY, Park SH, Hwang ES. 2011. Emergence of norovirus GII-4/2008 variant and recombinant strains in Seoul, Korea. Arch Virol 156:323-329.
15. Hoa Tran TN, Trainor E, Nakagomi T, Cunliffe NA, Nakagomi O. 2013. Molecular epidemiology of noroviruses associated with acute sporadic gastroenteritis in children: Global distribution of genogroups, genotypes and GII.4 variants. J Clin Virol 56:185-193.
16. Holland J, Spindler K, Horodyski F, Grabau E, Nichol S, VandePol S. 1982. Rapid evolution of RNA genomes. Science 215:1577-1585.
17. Iritani N, Kaida A, Abe N, Sekiguchi J, Kubo H, Takakura K, Goto K, Ogura H, Seto Y. 2012. Increase of GII.2 norovirus infections during the 2009-2010 season in Osaka City. Japan. J Med Virol 84:517-525.
18. Jiang X, Wang M, Wang K, Estes MK. 1993. Sequence and genomic organization of Norwalk virus. Virology 195:51-61.
19. Kojima S, Kageyama T, Fukushi S, Hoshino FB, Shinohara M, Uchida K, Natori K, Takeda N, Katayama K. 2002. Genogroup-specific PCR primers for detection of Norwalk-like viruses. J Virol Methods 100:107-114.
20. Kroneman A, Vennema H, Deforche K, v d Avoort H, Penaranda S, Oberste MS, Vinje J, Koopmans M. 2011. An automated genotyping tool for enteroviruses and noroviruses. J Clin Virol 51:121-125.
21. Lindesmith LC, Donaldson EF, Lobue AD, Cannon JL, Zheng DP, Vinje J, Baric RS. 2008. Mechanisms of GII.4 norovirus persistence in human populations. PLoS Med 5:e31.
22. Mans J, de Villiers JC, du Plessis NM, Avenant T, Taylor MB. 2010. Emerging norovirus GII. 4 2008 variant detected in hospitalised paediatric patients in South Africa. J Clin Virol 49:258-264.
23. Motomura K, Oka T, Yokoyama M, Nakamura H, Mori H, Ode H, Hansman GS, Katayama K, Kanda T, Tanaka T, Takeda N, Sato H. 2008. Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history. J Virol 82:11247-11262.
24. Motomura K, Yokoyama M, Ode H, Nakamura H, Mori H, Kanda T, Oka T, Katayama K, Noda M, Tanaka T, Takeda N, Sato H. 2010. Divergent evolution of norovirus GII/4 by genome recombination from May 2006 to February 2009 in Japan. J Virol 84:8085-8097.
25. Nayak MK, Chatterjee D, Nataraju SM, Pativada M, Mitra U, Chatterjee MK, Saha TK, Sarkar U, Krishnan T. 2009. A new variant of Norovirus GII.4/2007 and inter-genotype recombinant strains of NVGII causing acute watery diarrhoea among children in Kolkata, India. J Clin Virol 45:223-229.
26. Ozkul AA, Kocazeybek BS, Turan N, Reuter G, Bostan K, Yilmaz A, Altan E, Uyunmaz G, Karakose AR, Muratoglu K, Elevli M, Helps CR, Yilmaz H. 2011. Frequency and phylogeny of norovirus in diarrheic children in Istanbul, Turkey. J Clin Virol 51:160-164.
27. Prasad BV, Hardy ME, Dokland T, Bella J, Rossmann MG, Estes MK. 1999. X-ray crystallographic structure of the Norwalk virus capsid. Science 286:287-290.
28. Shannon CE. 1997. The mathematical theory of communication. 1963. MD Comput 14:306-317.
29. Sharp TM, Guix S, Katayama K, Crawford SE, Estes MK. 2010. Inhibition of cellular protein secretion by norwalk virus nonstructural protein p22 requires a mimic of an endoplasmic reticulum export signal. PLoS ONE 5:e13130.
30. Siebenga JJ, Vennema H, Zheng DP, Vinje J, Lee BE, Pang XL, Ho EC, Lim W, Choudekar A, Broor S, Halperin T, Rasool NB, Hewitt J, Greening GE, Jin M, Duan ZJ, Lucero Y, O'Ryan M, Hoehne M, Schreier E, Ratcliff RM, White PA, Iritani N, Reuter G, Koopmans M. 2009. Norovirus illness is a global problem: Emergence and spread of norovirus GII.4 variants, 2001-2007. J Infect Dis 200:802-812.
31. Siebenga JJ, Lemey P, Kosakovsky Pond SL, Rambaut A, Vennema H, Koopmans M. 2010. Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants. PLoS Pathog 6:e1000884.
32. Takanashi S, Hashira S, Matsunaga T, Yoshida A, Shiota T, Tung PG, Khamrin P, Okitsu S, Mizuguchi M, Igarashi T, Ushijima H. 2009. Detection, genetic characterization, and quantification of norovirus RNA from sera of children with gastroenteritis. J Clin Virol 44:161-163.
33. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEG A5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739.
34. Tan M, Jiang X. 2010. Norovirus gastroenteritis, carbohydrate receptors, and animal models. PLoS Pathog 6:e1000983.
35. Tan M, Huang P, Meller J, Zhong W, Farkas T, Jiang X. 2003. Mutations within the P2 domain of norovirus capsid affect binding to human histo-blood group antigens: Evidence for a binding pocket. J Virol 77:12562-12571.
36. Tu ET, Bull RA, Greening GE, Hewitt J, Lyon MJ, Marshall JA, McIver CJ, Rawlinson WD, White PA. 2008. Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b. Clin Infect Dis 46:413-420.
37. Vega E, Barclay L, Gregoricus N, Williams K, Lee D, Vinje J. 2011. Novel surveillance network for norovirus gastroenteritis outbreaks, United States. Emerg Infect Dis 17:1389-1395.
38. Vesikari T, Rautanen T, Varis T, Beards GM, Kapikian AZ. 1990. Rhesus Rotavirus candidate vaccine. Clinical trial in children vaccinated between 2 and 5 months of age. Am J Dis Child 144:285-289.
39. Wu FT, Oka T, Katayama K, Wu HS, Donald Jiang DS, Miyamura T, Takeda N, Hansman GS. 2006. Genetic diversity of noroviruses in Taiwan between November 2004 and March 2005. Arch Virol 151:1319-1327.
40. Wu TC, Liu HH, Chen YJ, Tang RB, Hwang BT, Yuan HC. 2008. Comparison of clinical features of childhood norovirus and rotavirus gastroenteritis in Taiwan. J Chin Med Assoc 71:566-570.
41. Yen C, Wikswo ME, Lopman BA, Vinje J, Parashar UD, Hall AJ. 2011. Impact of an emergent norovirus variant in 2009 on norovirus outbreak activity in the United States. Clin Infect Dis 53:568-571.
42. Zeitler CE, Estes MK, Venkataram Prasad BV. 2006. X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution. J Virol 80:5050-5058.
43. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS. 2006. Norovirus classification and proposed strain nomenclature. Virology 346:312-323.
44. Zheng DP, Widdowson MA, Glass RI, Vinje J. 2010. Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006. J Clin Microbiol 48:168-177.