Emergence of GII.e as a major ORF 1 norovirus genotype and its associated ORF 2 GII.4 variant forms

Infection, Genetics and Evolution

Volumn 22, Issue , 2014, Pages 157-163

  Bruggink, L D ^a   Dunbar, N L ^a   Marshall, J A ^a  

^a VICTORIAN INFECTIOUS DISEASES REFERENCE LABORATORY   (Australia)

Author keywords

Evolution; Norovirus; Recombination

Indexed keywords

ARTICLE; AUSTRALIA; EPIDEMIC; EVOLUTIONARY ADAPTATION; FECES ANALYSIS; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOTYPE; HUMAN; NONHUMAN; NOROVIRUS; NOROVIRUS INFECTION; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRAL GASTROENTERITIS; VIRUS DETECTION; VIRUS RECOMBINATION; VIRUS STRAIN; DNA MODIFICATION; GENETIC RECOMBINATION; MOLECULAR EVOLUTION; VIRAL GENETICS;

EVOLUTION; NOROVIRUS; RECOMBINATION;

AMINO ACID SEQUENCE; CALICIVIRIDAE INFECTIONS; DISEASE OUTBREAKS; FECES; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; NOROVIRUS; OPEN READING FRAMES; PHYLOGENY; RNA, VIRAL; SEQUENCE ALIGNMENT;

EID: 84896704800     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.01.025     Document Type: Article

References (27)

1. Barclay L., Wikswo M., Gregoricus N., Vinje J., Lopman B., Parashar U., Hall A., Leshem E. Notes from the field: emergence of new norovirus strain GII.4 Sydney - United States, 2012. MMWR Morb. Mortal. Wkly. Rep. 2013, 62(03):55.
2. Bennett S., MacLean A., Miller R.S., Aitken C., Gunson R.N. Increased norovirus activity in Scotland in 2012 is associated with the emergence of a new norovirus GII.4 variant. Euro. Surveill. 2013, 18(2). pii: 20349.
3. Bruggink L.D., Marshall J.A. Molecular and epidemiological features of GIIb norovirus outbreaks in Victoria, Australia, 2002-2005. J. Med. Virol. 2009, 81:1652-1660.
4. Bruggink L., Marshall J. The relationship between health care and nonhealth care norovirus outbreak settings and norovirus genotype in Victoria, Australia, 2002-2005. J. Microbiol. Immunol. Infect. 2011, 44:241-246.
5. Bruggink L., Sameer R., Marshall J. Molecular and epidemiological characteristics of norovirus associated with community-based sporadic gastroenteritis incidents and norovirus outbreaks in Victoria, Australia, 2002-2007. Intervirology 2010, 53:167-172.
6. Bruggink L.D., Oluwatoyin O., Sameer R., Witlox K.J., Marshall J.A. Molecular and epidemiological features of gastroenteritis outbreaks involving genogroup I norovirus in Victoria, Australia, 2002-2010. J. Med. Virol. 2012, 84:1437-1448.
7. Bull R.A., Tanaka M.M., White P.A. Norovirus recombination. J. Gen. Virol. 2007, 88:3347-3359.
8. Clark B., McKendrick M. A review of viral gastroenteritis. Curr. Opin. Infect. Dis. 2004, 17:461-469.
9. Clarke I.N., Estes M.K., Green K.Y., Hansman G.S., Knowles N.J., Koopmans M.K., Matson D.O., Meyers G., Neill J.D., Radford A., Smith A.W., Studdert M.J., Thiel H.-J., Vinje J. Family Caliciviridae. Virus Taxonomy 2012, 977-986. Elsevier Academic Press, Amsterdam. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Eds.).
10. Eden J.-S., Bull R.A., Tu E., McIver C.J., Lyon M.J., Marshall J.A., Smith D.W., Musto J., Rawlinson W.D., White P.A. Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008. J. Clin. Virol. 2010, 49:265-271.
11. Eden J.-S., Tanaka M.M., Boni M.F., Rawlinson W.D., White P.A. Recombination within the pandemic norovirus GII.4 lineage. J. Virol. 2013, 87:6270-6282.
12. Ferguson G.A. Statistical Analysis in Psychology and Education 1981, McGraw-Hill Book Company, New York, p. 175. fifth ed.
13. Fonager J., Hindbaek L.S., Fischer T.K. Rapid emergence and antigenic diversification of the norovirus 2012 Sydney variant in Denmark, October to December, 2012. Euro. Surveill. 2013, 18(9). pii: 20413.
14. Green, K.Y., 2007. Caliciviridae: the noroviruses, In: Knipe, D.M., Howley, P.M. (Eds.), Fields Virology, fifth ed., vol. 1, Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp. 949-979.
15. Hasing M.E., Lee B.E., Preiksaitis J.K., Tellier R., Honish L., Senthilselvan A., Pang X.L. Emergence of a new norovirus GII.4 variant and changes in the historical biennial pattern of norovirus outbreak activity in Alberta, Canada, from 2008 to 2012. J. Clin. Microbiol. 2013, 51:2204-2211.
16. Kroneman A., Vennema H., Deforche K., v d Avoort H., Penaranda S., Oberste M.S., Vinje J., Koopmans M. An automated genotyping tool for enteroviruses and noroviruses. J. Clin. Virol. 2011, 51:121-125.
17. La Rosa G., Pourshaban M., Iaconelli M., Muscillo M. Detection of genogroup IV noroviruses in environmental and clinical samples and partial sequencing through rapid amplification of cDNA ends. Arch. Virol. 2008, 153:2077-2083.
18. Mathijs E., Denayer S., Palmeira L., Bottledoorn N., Scipioni A., Vanderplasschen A., Thiry E., Dierick K. Novel norovirus recombinants and of GII.4 sub-lineages associated with outbreaks between 2006 and 2010 in Belgium. Virol. J. 2011, 8:310.
19. Patel M.M., Hall A.J., Vinje J., Parashar U.D. Noroviruses: a comprehensive review. J. Clin. Virol. 2009, 44:1-8.
20. Puustinen L., Blazevic V., Salminen M., Hamalainen M., Rasanen S., Vesikari T. Noroviruses as a major cause of acute gastroenteritis in children in Finland, 2009-2010. Scand. J. Infect. Dis. 2011, 43:804-808.
21. van Beek J., Ambert-Balay K., Botteldoorn N., Eden J.S., Fonager J., Hewitt J., Iritani N., Kroneman A., Vennema H., Vinje J., White P.A., Koopmans M. Indications for worldwide increased norovirus activity associated with emergence of a new variant of genotype II.4, late 2012. Euro. Surveill. 2013, 18(1). pii: 20345.
22. Vinje J., Green J., Lewis D.C., Gallimore C.I., Brown D.W.G., Koopmans M.P.G. Genetic polymorphism across regions of the three open reading frames of "Norwalk-like viruses". Arch. Virol. 2000, 145:223-241.
23. Vinje J., Hamidjaja R.A., Sobsey M.D. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J. Virol. Methods 2004, 116:109-117.
24. Witlox K.J., Nguyen T.N., Bruggink L.D., Catton M.G., Marshall J.A. A comparative evaluation of the sensitivity of two automated and two manual nucleic acid extraction methods for the detection of norovirus by RT-PCR. J. Virol. Methods 2008, 150:70-72.
25. Witlox K.J., Karapanagiotidis T., Bruggink L.D., Marshall J.A. The effect of fecal turbidity on norovirus detection by reverse transcriptase polymerase chain reaction. Diagn. Microbiol. Infect. Dis. 2010, 66:230-232.
26. Yuen L.K.W., Catton M.G., Cox B.J., Wright P.J., Marshall J.A. Heminested multiplex reverse transcription-PCR for detection and differentiation of Norwalk-like virus genogroups 1 and 2 in fecal samples. J. Clin. Microbiol. 2001, 39:2690-2694.
27. Zheng D.-P., Ando T., Fankhauser R.L., Beard R.S., Glass R.I., Monroe S.S. Norovirus classification and proposed strain nomenclature. Virology 2006, 346:312-323.