Altered patterns of norovirus GII.b recombinant forms in gastroenteritis outbreaks in Victoria, Australia, 2002-2005 compared to 2006-2011

Journal of Medical Virology

Volumn 85, Issue 8, 2013, Pages 1433-1443

  Bruggink, L D ^a   Marshall, J A ^a  

^a VICTORIAN INFECTIOUS DISEASES REFERENCE LABORATORY   (Australia)

Author keywords

GII.b GII.1; GII.b GII.13; GII.b GII.21; GII.b GII.3

Indexed keywords

NUCLEOTIDE;

ADULT; AGED; ARTICLE; AUSTRALIA; EPIDEMIC; GASTROENTERITIS; GENOTYPE; HUMAN; INCIDENCE; MAJOR CLINICAL STUDY; NOROVIRUS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SEQUENCE ANALYSIS; VIRUS RECOMBINANT;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; CALICIVIRIDAE INFECTIONS; CHILD; CHILD, PRESCHOOL; CLUSTER ANALYSIS; DISEASE OUTBREAKS; FEMALE; GASTROENTERITIS; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MALE; MIDDLE AGED; NOROVIRUS; PHYLOGENY; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; VICTORIA; YOUNG ADULT;

NOROVIRUS;

EID: 84879173030     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.23633     Document Type: Article

References (32)

1. Bon F, Ambert-Balay K, Giraudon H, Kaplon J, Le Guyader S, Pommepuy M, Gallay A, Vaillant V, de Valk H, Chikhi-Brachet R, Flahaut A, Pothier P, Kohli E. 2005. Molecular epidemiology of caliciviruses detected in sporadic and outbreak cases of gastroenteritis in France from December 1998 to February 2004. J Clin Microbiol 43:4659-4664.
2. Bruggink L, Marshall J. 2008. Molecular changes in the norovirus polymerase gene and their association with incidence of GII.4 norovirus-associated gastroenteritis outbreaks in Victoria, Australia, 2001-2005. Arch Virol 153:729-732.
3. Bruggink LD, Marshall JA. 2009. Molecular and epidemiological features of GIIb norovirus outbreaks in Victoria, Australia, 2002-2005. J Med Virol 81:1652-1660.
4. Bruggink L, Sameer R, Marshall J. 2010. Molecular and epidemiological characteristics of norovirus associated with community-based sporadic gastroenteritis incidents and norovirus outbreaks in Victoria, Australia, 2002-2007. Intervirology 53:167-172.
5. Bruggink LD, Oluwatoyin O, Sameer R, Witlox KJ, Marshall JA. 2012. Molecular and epidemiological features of gastroenteritis outbreaks involving genogroup I norovirus in Victoria, Australia, 2002-2010. J Med Virol 84:1437-1448.
6. Bull RA, Tanaka MM, White PA. 2007. Norovirus recombination. J Gen Virol 88:3347-3359.
7. Burton-MacLeod JA, Kane EM, Beard RS, Hadley LA, Glass RI, Ando T. 2004. Evaluation and comparison of two commercial enzyme-linked immunosorbent assay kits for detection of antigenically diverse human noroviruses in stool samples. J Clin Microbiol 42:2587-2595.
8. Chamary JV, Hurst LD. 2009. The price of silent mutations. Sci Am 300:34-41.
9. Chhabra P, Dhongade RK, Kalrao VR, Bavdekar AR, Chitambar SD. 2009. Epidemiological, clinical, and molecular features of norovirus infections in western India. J Med Virol 81:922-932.
10. Chhabra P, Walimbe AM, Chitambar SD. 2010. Molecular characterization of three novel intergenotype norovirus GII recombinant strains from western India. Virus Res 147:242-246.
11. Clark B, McKendrick M. 2004. A review of viral gastroenteritis. Curr Opin Infect Dis 17:461-469.
12. Clarke IN, Estes MK, Green KY, Hansman GS, Knowles NJ, Koopmans MK, Matson DO, Meyers G, Neill JD, Radford A, Smith AW, Studdert MJ, Thiel H-J, Vinje J. 2012. Family Caliciviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, editors. Virus taxonomy. Amsterdam: Elsevier Academic Press. pp 977-986.
13. D'Agostino RB, Sullivan LM, Beiser AS. 2006. Introductory applied biostatistics. Belmont: Thomson Brooks/Cole. pp 244-247.
14. Felsenstein J. 1989. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5:164-166.
15. Ferreira MSR, Garcia RdCC, Xavier MdPTP, Ribeiro RL, Assis RM, Mota MdCMS, Leite JPG, Miagostovich MP, de Oliveira SA. 2012. Genotyping of gastroenteric viruses in hospitalised children: First report of norovirus GII.21 in Brazil. Mem Inst Oswaldo Cruz 107:1064-1067.
16. Fukuda S, Sasaki Y, Takao S, Seno M. 2008. Recombinant norovirus implicated in gastroenteritis outbreaks in Hiroshima Prefecture, Japan. J Med Virol 80:921-928.
17. Hays WL. 1963. Statistics for psychologists. New York: Holt, Rinehart and Winston. pp 598-601.
18. Judson O. 2008. Inside the code. Natural History 117:31-34.
19. Kroneman A, Vennema H, Deforche K, Avoort Hvd, Penaranda S, Oberste MS, Vinje J, Koopmans M. 2011. An automated genotyping tool for enteroviruses and noroviruses. J Clin Virol 51:121-125.
20. Marshall JA, Dimitriadis A, Wright PJ. 2005. Molecular and epidemiological features of norovirus-associated gastroenteritis outbreaks in Victoria, Australia in 2001. J Med Virol 75:321-331.
21. Mathijs E, Denayer S, Palmeira L, Bottledoorn N, Scipioni A, Vanderplasschen A, Thiry E, Dierick K. 2011. Novel norovirus recombinants and of GII.4 sub-lineages associated with outbreaks between 2006 and 2010 in Belgium. Virol J 8:310.
22. McAllister G, Holmes A, Garcia L, Cameron F, Cloy K, Danial J, Cepeda JA, Simmonds P, Templeton KE. 2012. Molecular epidemiology of norovirus in Edinburgh healthcare facilities, Scotland 2007-2011. Epidemiol Infect 140:2273-2281.
23. Perez-Sautu U, Sano D, Guix S, Kasimir G, Pinto RM, Bosch A. 2012. Human norovirus occurrence and diversity in the Llobregat river catchment, Spain. Environ Microbiol 14:494-502.
24. Reuter G, Krisztalovics K, Vennema H, Koopmans M, Szucs G. 2005. Evidence of the etiological predominance of norovirus in gastroenteritis outbreaks-emerging new-variant and recombinant noroviruses in Hungary. J Med Virol 76:598-607.
25. Trang NV, Luan LT, Kim-Anh LT, Hau VTB, Nhung LTH, Phasuk P, Setrabutr O, Shirley H, Vinje J, Anh DD, Mason CJ. 2012. Detection and molecular characterization of noroviruses and sapoviruses in children admitted to hospital with acute gastroenteritis in Vietnam. J Med Virol 84:290-297.
26. Vainio K, Myrmel M. 2006. Molecular epidemiology of norovirus outbreaks in Norway during 2000 to 2005 and comparison of four norovirus real-time reverse transcriptase PCR assays. J Clin Microbiol 44:3695-3702.
27. Vinje J, Green J, Lewis DC, Gallimore CI, Brown DWG, Koopmans MPG. 2000. Genetic polymorphism across regions of the three open reading frames of "Norwalk-like viruses." Arch Virol 145:223-241.
28. Vinje J, Hamidjaja RA, Sobsey MD. 2004. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Methods 116:109-117.
29. Witlox KJ, Nguyen TN, Bruggink LD, Catton MG, Marshall JA. 2008. A comparative evaluation of the sensitivity of two automated and two manual nucleic acid extraction methods for the detection of norovirus by RT-PCR. J Virol Methods 150:70-72.
30. Witlox KJ, Karapanagiotidis T, Bruggink LD, Marshall JA. 2010. The effect of fecal turbidity on norovirus detection by reverse transcriptase polymerase chain reaction. Diag Microbiol Inf Dis 66:230-232.
31. Yuen LKW, Catton MG, Cox BJ, Wright PJ, Marshall JA. 2001. Heminested multiplex reverse transcription-PCR for detection and differentiation of Norwalk-like virus genogroups 1 and 2 in fecal samples. J Clin Microbiol 39:2690-2694.
32. Zeng M, Xu X, Zhu C, Chen J, Zhu Q, Lin S, Jie Y, Shu X, Chinese Pediatric Study Group of Norovirus Diarrhea. 2012. Clinical and molecular epidemiology of norovirus infection in childhood diarrhea in China. J Med Virol 84:145-151.