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Volumn 24, Issue 8, 2015, Pages 2297-2307

Mutation in mitochondrial ribosomal protein S7 (MRPS7) causes congenital sensorineural deafness, progressive hepatic and renal failure and lactic acidemia

(19)  Menezes, Minal J a,b   Guo, Yiran c   Zhang, Jianguo d,e   Riley, Lisa G a,b   Cooper, Sandra T a,b   Thorburn, David R f,g   Li, Jiankang e   Dong, Daoyuan h   Li, Zhijun h   Glessner, Joseph c   Davis, Ryan L i   Sue, Carolyn M i   Alexander, Stephen I a,b   Arbuckle, Susan a   Kirwan, Paul k   Keating, Brendan J c,j   Xu, Xun e   Hakonarson, Hakon c,j   Christodoulou, John a,b  


Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE; GENTAMICIN; HYDROCORTISONE; METHIONINE; MITOCHONDRIAL PROTEIN; MITOCHONDRIAL RIBOSOMAL PROTEIN S7; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE); RIBOSOME PROTEIN; RNA 12S; TETRACOSACTIDE; UBIQUINOL CYTOCHROME C REDUCTASE; UNCLASSIFIED DRUG; VALINE; VANCOMYCIN; MRPS7 PROTEIN, HUMAN;

EID: 84926473253     PISSN: 09646906     EISSN: 14602083     Source Type: Journal    
DOI: 10.1093/hmg/ddu747     Document Type: Article
Times cited : (62)

References (56)
  • 1
    • 79960555933 scopus 로고    scopus 로고
    • Human diseases with impaired mitochondrial protein synthesis
    • Rotig, A. (2011) Human diseases with impaired mitochondrial protein synthesis. Biochim. Biophys. Acta, 1807, 1198-1205.
    • (2011) Biochim. Biophys. Acta , vol.1807 , pp. 1198-1205
    • Rotig, A.1
  • 2
    • 77952472152 scopus 로고    scopus 로고
    • Mitochondrial translation and beyond: processes implicated in combined oxidative phosphorylation deficiencies
    • Smits, P., Smeitink, J. and van den Heuvel, L. (2010) Mitochondrial translation and beyond: processes implicated in combined oxidative phosphorylation deficiencies. J. Biomed. Biotechnol., 2010, 737385.
    • (2010) J. Biomed. Biotechnol. , vol.2010 , pp. 737385
    • Smits, P.1    Smeitink, J.2    van den Heuvel, L.3
  • 3
    • 34548052424 scopus 로고    scopus 로고
    • Translation matters: protein synthesis defects in inherited disease
    • Scheper, G.C., van der Knaap, M.S. and Proud, C.G. (2007) Translation matters: protein synthesis defects in inherited disease. Nat. Rev. Genet., 8, 711-723.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 711-723
    • Scheper, G.C.1    van der Knaap, M.S.2    Proud, C.G.3
  • 4
    • 84877320879 scopus 로고    scopus 로고
    • Mutations in mitochondrial ribosomal protein MRPL12 leads to growth retardation, neurological deterioration and mitochondrial translation deficiency
    • Serre, V., Rozanska, A., Beinat, M., Chretien, D., Boddaert, N., Munnich, A., Rotig, A. and Chrzanowska-Lightowlers, Z.M. (2013) Mutations in mitochondrial ribosomal protein MRPL12 leads to growth retardation, neurological deterioration and mitochondrial translation deficiency. Biochim. Biophys. Acta, 1832, 1304-1312.
    • (2013) Biochim. Biophys. Acta , vol.1832 , pp. 1304-1312
    • Serre, V.1    Rozanska, A.2    Beinat, M.3    Chretien, D.4    Boddaert, N.5    Munnich, A.6    Rotig, A.7    Chrzanowska-lightowlers, Z.M.8
  • 5
    • 0035380711 scopus 로고    scopus 로고
    • The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present
    • Cavdar Koc, E., Burkhart, W., Blackburn, K., Moseley, A. and Spremulli, L.L. (2001) The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. J. Biol. Chem., 276, 19363-19374.
    • (2001) J. Biol. Chem. , vol.276 , pp. 19363-19374
    • Cavdar Koc, E.1    Burkhart, W.2    Blackburn, K.3    Moseley, A.4    Spremulli, L.L.5
  • 6
    • 18444411651 scopus 로고    scopus 로고
    • The social life of ribosomal proteins
    • Brodersen, D.E. and Nissen, P. (2005) The social life of ribosomal proteins. FEBS J., 272, 2098-2108.
    • (2005) FEBS J. , vol.272 , pp. 2098-2108
    • Brodersen, D.E.1    Nissen, P.2
  • 7
  • 11
    • 84874934557 scopus 로고    scopus 로고
    • Whole-exome sequencing identifies a mutation in the mitochondrial ribosome protein MRPL44 to underlie mitochondrial infantile cardiomyopathy
    • Carroll, C.J., Isohanni, P., Poyhonen, R., Euro, L., Richter, U., Brilhante, V., Gotz, A., Lahtinen, T., Paetau, A., Pihko, H. et al. (2013) Whole-exome sequencing identifies a mutation in the mitochondrial ribosome protein MRPL44 to underlie mitochondrial infantile cardiomyopathy. J. Med. Genet., 50, 151-159.
    • (2013) J. Med. Genet. , vol.50 , pp. 151-159
    • Carroll, C.J.1    Isohanni, P.2    Poyhonen, R.3    Euro, L.4    Richter, U.5    Brilhante, V.6    Gotz, A.7    Lahtinen, T.8    Paetau, A.9    Pihko, H.10
  • 14
    • 84880934152 scopus 로고    scopus 로고
    • Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement
    • Wang, K., Kim, C., Bradfield, J., Guo, Y., Toskala, E., Otieno, F. G., Hou, C., Thomas, K., Cardinale, C., Lyon, G.J. et al. (2013) Whole-genome DNA/RNA sequencing identifies truncating mutations in RBCK1 in a novel Mendelian disease with neuromuscular and cardiac involvement. Genome Med., 5, 67.
    • (2013) Genome Med. , vol.5 , pp. 67
    • Wang, K.1    Kim, C.2    Bradfield, J.3    Guo, Y.4    Toskala, E.5    Otieno, F.G.6    Hou, C.7    Thomas, K.8    Cardinale, C.9    Lyon, G.J.10
  • 15
    • 33745698176 scopus 로고    scopus 로고
    • A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues
    • Muppirala, U.K. and Li, Z. (2006) A simple approach for protein structure discrimination based on the network pattern of conserved hydrophobic residues. Protein Eng. Des. Sel., 19, 265-275.
    • (2006) Protein Eng. Des. Sel. , vol.19 , pp. 265-275
    • Muppirala, U.K.1    Li, Z.2
  • 16
    • 45449099046 scopus 로고    scopus 로고
    • The effect of mutated mitochondrial ribosomal proteins S16 and S22 on the assembly of the small and large ribosomal subunits in human mitochondria
    • Emdadul Haque, M., Grasso, D., Miller, C., Spremulli, L.L. and Saada, A. (2008) The effect of mutated mitochondrial ribosomal proteins S16 and S22 on the assembly of the small and large ribosomal subunits in human mitochondria. Mitochondrion, 8, 254-261.
    • (2008) Mitochondrion , vol.8 , pp. 254-261
    • Emdadul Haque, M.1    Grasso, D.2    Miller, C.3    Spremulli, L.L.4    Saada, A.5
  • 24
    • 84892600839 scopus 로고    scopus 로고
    • Mitochondrial form and function
    • Friedman, J.R. and Nunnari, J. (2014) Mitochondrial form and function. Nature, 505, 335-343.
    • (2014) Nature , vol.505 , pp. 335-343
    • Friedman, J.R.1    Nunnari, J.2
  • 25
    • 84895556398 scopus 로고    scopus 로고
    • Mitochondrial respiratory chain disorders in childhood: insights into diagnosis and management in the new era of genomic medicine
    • Menezes, M.J., Riley, L.G. and Christodoulou, J. (2014) Mitochondrial respiratory chain disorders in childhood: insights into diagnosis and management in the new era of genomic medicine. Biochim. Biophys. Acta, 1840, 1368-1379.
    • (2014) Biochim. Biophys. Acta , vol.1840 , pp. 1368-1379
    • Menezes, M.J.1    Riley, L.G.2    Christodoulou, J.3
  • 27
    • 84908678168 scopus 로고    scopus 로고
    • Advantage of whole exome sequencing over allele-specific and targeted segment sequencing
    • detection of novel TULP1 mutation in leber congenital amaurosis, [Epub ahead of print]
    • Guo, Y., Prokudin, I., Yu, C., Liang, J., Xie, Y., Flaherty, M., Tian, L., Crofts, S., Wang, F., Snyder, J. et al. (2014) Advantage of whole exome sequencing over allele-specific and targeted segment sequencing, in detection of novel TULP1 mutation in leber congenital amaurosis. Ophthalmic Genet. [Epub ahead of print].
    • (2014) Ophthalmic Genet
    • Guo, Y.1    Prokudin, I.2    Yu, C.3    Liang, J.4    Xie, Y.5    Flaherty, M.6    Tian, L.7    Crofts, S.8    Wang, F.9    Snyder, J.10
  • 28
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 30
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
    • e164
    • Wang, K., Li, M. and Hakonarson, H. (2010) ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res., 38, e164.
    • (2010) Nucleic Acids Res. , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 31
    • 84862506964 scopus 로고    scopus 로고
    • A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
    • Cingolani, P., Platts, A., Wang le, L., Coon, M., Nguyen, T., Wang, L., Land, S.J., Lu, X. and Ruden, D.M. (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly, 6, 80-92.
    • (2012) Fly , vol.6 , pp. 80-92
    • Cingolani, P.1    Platts, A.2    Wang le, L.3    Coon, M.4    Nguyen, T.5    Wang, L.6    Land, S.J.7    Lu, X.8    Ruden, D.M.9
  • 32
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li, R., Li, Y., Kristiansen, K. and Wang, J. (2008) SOAP: short oligonucleotide alignment program. Bioinformatics, 24, 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 33
    • 66449114324 scopus 로고    scopus 로고
    • SNP detection for massively parallel wholegenome resequencing
    • Li, R., Li, Y., Fang, X., Yang, H., Wang, J., Kristiansen, K. and Wang, J. (2009) SNP detection for massively parallel wholegenome resequencing. Genome Res., 19, 1124-1132.
    • (2009) Genome Res. , vol.19 , pp. 1124-1132
    • Li, R.1    Li, Y.2    Fang, X.3    Yang, H.4    Wang, J.5    Kristiansen, K.6    Wang, J.7
  • 37
    • 79959789752 scopus 로고    scopus 로고
    • Detection of lineage-specific evolutionary changes among primate species
    • Pertea, M., Pertea, G.M. and Salzberg, S.L. (2011) Detection of lineage-specific evolutionary changes among primate species. BMC Bioinformatics, 12, 274.
    • (2011) BMC Bioinformatics , vol.12 , pp. 274
    • Pertea, M.1    Pertea, G.M.2    Salzberg, S.L.3
  • 38
    • 84878799611 scopus 로고    scopus 로고
    • Predicting functional effect of human missense mutations using Poly-Phen-2
    • Chapter 7, Unit7.20
    • Adzhubei, I., Jordan, D.M. and Sunyaev, S.R. (2013) Predicting functional effect of human missense mutations using Poly-Phen-2. Curr. Protoc. Hum. Genet., Chapter 7, Unit7.20.
    • (2013) Curr. Protoc. Hum. Genet.
    • Adzhubei, I.1    Jordan, D.M.2    Sunyaev, S.R.3
  • 39
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • Ng, P.C. and Henikoff, S. (2001) Predicting deleterious amino acid substitutions. Genome Res., 11, 863-874.
    • (2001) Genome Res. , vol.11 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 41
    • 84876372476 scopus 로고    scopus 로고
    • ParseCNV integrative copy number variation association software with quality tracking
    • e64
    • Glessner, J.T., Li, J. and Hakonarson, H. (2013) ParseCNV integrative copy number variation association software with quality tracking. Nucleic Acids Res., 41, e64.
    • (2013) Nucleic Acids Res. , vol.41
    • Glessner, J.T.1    Li, J.2    Hakonarson, H.3
  • 42
    • 35948984173 scopus 로고    scopus 로고
    • PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    • Wang, K., Li, M., Hadley, D., Liu, R., Glessner, J., Grant, S.F., Hakonarson, H. and Bucan, M. (2007) PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res., 17, 1665-1674.
    • (2007) Genome Res. , vol.17 , pp. 1665-1674
    • Wang, K.1    Li, M.2    Hadley, D.3    Liu, R.4    Glessner, J.5    Grant, S.F.6    Hakonarson, H.7    Bucan, M.8
  • 43
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: a hub of integrated protein data
    • bar009
    • Magrane, M. and Consortium, U. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database, 2011, bar009.
    • (2011) Database, 2011
    • Magrane, M.1    Consortium, U.2
  • 45
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 46
    • 0347383758 scopus 로고    scopus 로고
    • Modeller: generation and refinement of homology-based protein structure models
    • Fiser, A. and Sali, A. (2003) Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol., 374, 461-491.
    • (2003) Methods Enzymol. , vol.374 , pp. 461-491
    • Fiser, A.1    Sali, A.2
  • 47
    • 0000243829 scopus 로고
    • PROCHECK: a program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 48
    • 84883470542 scopus 로고    scopus 로고
    • The ModFOLD4 server for the quality assessment of 3D protein models
    • McGuffin, L.J., Buenavista, M.T. and Roche, D.B. (2013) The ModFOLD4 server for the quality assessment of 3D protein models. Nucleic Acids Res., 41, W368-W372.
    • (2013) Nucleic Acids Res. , vol.41 , pp. W368-W372
    • McGuffin, L.J.1    Buenavista, M.T.2    Roche, D.B.3
  • 49
    • 77954257799 scopus 로고    scopus 로고
    • ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
    • Ashkenazy, H., Erez, E., Martz, E., Pupko, T. and Ben-Tal, N. (2010) ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res., 38, W529-W533.
    • (2010) Nucleic Acids Res. , vol.38 , pp. W529-W533
    • Ashkenazy, H.1    Erez, E.2    Martz, E.3    Pupko, T.4    Ben-tal, N.5
  • 50
    • 34249777526 scopus 로고    scopus 로고
    • Eris: an automated estimator of protein stability
    • Yin, S., Ding, F. and Dokholyan, N.V. (2007) Eris: an automated estimator of protein stability. Nat. Methods, 4, 466-467.
    • (2007) Nat. Methods , vol.4 , pp. 466-467
    • Yin, S.1    Ding, F.2    Dokholyan, N.V.3
  • 51
    • 79959942908 scopus 로고    scopus 로고
    • SDM-a server for predicting effects of mutations on protein stability and malfunction
    • Worth, C.L., Preissner, R. and Blundell, T.L. (2011) SDM-a server for predicting effects of mutations on protein stability and malfunction. Nucleic Acids Res., 39, W215-W222.
    • (2011) Nucleic Acids Res. , vol.39 , pp. W215-W222
    • Worth, C.L.1    Preissner, R.2    Blundell, T.L.3
  • 52
    • 23144461249 scopus 로고    scopus 로고
    • I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure
    • Capriotti, E., Fariselli, P. and Casadio, R. (2005) I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Res., 33, W306-W310.
    • (2005) Nucleic Acids Res. , vol.33 , pp. W306-W310
    • Capriotti, E.1    Fariselli, P.2    Casadio, R.3
  • 53
    • 84903147593 scopus 로고    scopus 로고
    • SuSPect: enhanced prediction of single amino acid variant (SAV) phenotype using network features
    • Yates, C.M., Filippis, I., Kelley, L.A. and Sternberg, M.J. (2014) SuSPect: enhanced prediction of single amino acid variant (SAV) phenotype using network features. J. Mol. Biol., 426, 2692-2701.
    • (2014) J. Mol. Biol. , vol.426 , pp. 2692-2701
    • Yates, C.M.1    Filippis, I.2    Kelley, L.A.3    Sternberg, M.J.4
  • 54
    • 84856317430 scopus 로고    scopus 로고
    • Biochemical analyses of the electron transport chain complexes by spectrophotometry
    • Frazier, A.E. and Thorburn, D.R. (2012) Biochemical analyses of the electron transport chain complexes by spectrophotometry. Methods Mol. Biol., 837, 49-62.
    • (2012) Methods Mol. Biol. , vol.837 , pp. 49-62
    • Frazier, A.E.1    Thorburn, D.R.2
  • 56
    • 63449100136 scopus 로고    scopus 로고
    • Analysis of respiratory chain complex assembly with radiolabled nuclear- and mitochondrial-encoded subunits
    • McKenzie, M., Lazarou, M. and Ryan, M. (2009) Analysis of respiratory chain complex assembly with radiolabled nuclear- and mitochondrial-encoded subunits. Methods Enzymol., 456, 321-339.
    • (2009) Methods Enzymol. , vol.456 , pp. 321-339
    • McKenzie, M.1    Lazarou, M.2    Ryan, M.3


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