메뉴 건너뛰기




Volumn 10, Issue 3, 2015, Pages

Defining a conformational consensus motif in cotransin-sensitive signal sequences: A proteomic and site-directed mutagenesis study

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; APOLIPOPROTEIN B100; CADHERIN; CADHERIN 2; CALNEXIN; CLAUDIN 1; COTRANSIN; INTEGRAL MEMBRANE PROTEIN; MEMBRANE PROTEIN; PEPTIDE; PLASMINOGEN ACTIVATOR INHIBITOR 1; SIGNAL ANCHOR SEQUENCE; SIGNAL PEPTIDE; UNCLASSIFIED DRUG; AQP2 PROTEIN, HUMAN; AQUAPORIN 2; CARBON; CYCLOPEPTIDE; NITROGEN; RECOMBINANT PROTEIN;

EID: 84926324404     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0120886     Document Type: Article
Times cited : (15)

References (34)
  • 1
    • 0021856417 scopus 로고
    • Signal sequences. The limits of variation
    • PMID: 4032478
    • von Heijne G. Signal sequences. The limits of variation. J Mol Biol. 1985; 184(1):99-105. PMID: 4032478
    • (1985) J Mol Biol , vol.184 , Issue.1 , pp. 99-105
    • Von Heijne, G.1
  • 2
    • 0025183758 scopus 로고
    • Protein targeting signals
    • PMID: 2252586
    • von Heijne G. Protein targeting signals. Curr Opin Cell Biol. 1990; 2(4):604-8. PMID: 2252586
    • (1990) Curr Opin Cell Biol , vol.2 , Issue.4 , pp. 604-608
    • Von Heijne, G.1
  • 3
    • 4944228608 scopus 로고    scopus 로고
    • Topogenesis of membrane proteins at the endoplasmic reticulum
    • PMID: 15461443
    • Higy M, Junne T, Spiess M. Topogenesis of membrane proteins at the endoplasmic reticulum. Biochemistry. 2004; 43(40):12716-22. PMID: 15461443
    • (2004) Biochemistry , vol.43 , Issue.40 , pp. 12716-12722
    • Higy, M.1    Junne, T.2    Spiess, M.3
  • 4
    • 22444450987 scopus 로고    scopus 로고
    • A substrate-specific inhibitor of protein translocation into the endoplasmic reticulum
    • PMID: 16015336
    • Garrison JL, Kunkel EJ, Hegde RS, Taunton J. A substrate-specific inhibitor of protein translocation into the endoplasmic reticulum. Nature. 2005; 436(7048):285-9. PMID: 16015336
    • (2005) Nature , vol.436 , Issue.7048 , pp. 285-289
    • Garrison, J.L.1    Kunkel, E.J.2    Hegde, R.S.3    Taunton, J.4
  • 5
    • 22444433005 scopus 로고    scopus 로고
    • Selective inhibition of cotranslational translocation of vascular cell adhesion molecule 1
    • PMID: 16015337
    • Besemer J, Harant H, Wang S, Oberhauser B, Marquardt K, Foster CA, et al. Selective inhibition of cotranslational translocation of vascular cell adhesion molecule 1. Nature. 2005; 436(7048):290-3. PMID: 16015337
    • (2005) Nature , vol.436 , Issue.7048 , pp. 290-293
    • Besemer, J.1    Harant, H.2    Wang, S.3    Oberhauser, B.4    Marquardt, K.5    Foster, C.A.6
  • 6
    • 80053929969 scopus 로고    scopus 로고
    • Inhibition of biosynthesis of human endothelin B receptor by the cyclodepsipeptide cotransin
    • PMID: 21808059
    • Westendorf C, Schmidt A, Coin I, Furkert J, Ridelis I, Zampatis D, et al. Inhibition of biosynthesis of human endothelin B receptor by the cyclodepsipeptide cotransin. J Biol Chem. 2011; 286(41):35588-600. doi: 10.1074/jbc.M111.239244 PMID: 21808059
    • (2011) J Biol Chem , vol.286 , Issue.41 , pp. 35588-35600
    • Westendorf, C.1    Schmidt, A.2    Coin, I.3    Furkert, J.4    Ridelis, I.5    Zampatis, D.6
  • 7
    • 84898761276 scopus 로고    scopus 로고
    • An allosteric Sec61 inhibitor traps nascent transmembrane helices at the lateral gate
    • PMID: 24497544
    • Mackinnon AL, Paavilainen VO, Sharma A, Hegde RS, Taunton J. An allosteric Sec61 inhibitor traps nascent transmembrane helices at the lateral gate. Elife. 2014; 3:e01483. doi: 10.7554/eLife.01483 PMID: 24497544
    • (2014) Elife , vol.3 , pp. e01483
    • Mackinnon, A.L.1    Paavilainen, V.O.2    Sharma, A.3    Hegde, R.S.4    Taunton, J.5
  • 8
    • 80053143374 scopus 로고    scopus 로고
    • Secretory protein profiling reveals TNF-alpha inactivation by selective and promiscuous Sec61 modulators
    • PMID: 21944747
    • Maifeld SV, MacKinnon AL, Garrison JL, Sharma A, Kunkel EJ, Hegde RS, et al. Secretory protein profiling reveals TNF-alpha inactivation by selective and promiscuous Sec61 modulators. Chem Biol. 2011; 18(9):1082-8. doi: 10.1016/j.chembiol.2011.06.015 PMID: 21944747
    • (2011) Chem Biol , vol.18 , Issue.9 , pp. 1082-1088
    • Maifeld, S.V.1    MacKinnon, A.L.2    Garrison, J.L.3    Sharma, A.4    Kunkel, E.J.5    Hegde, R.S.6
  • 9
    • 33750081430 scopus 로고    scopus 로고
    • The translocation inhibitor CAM741 interferes with vascular cell adhesion molecule 1 signal peptide insertion at the translocon
    • PMID: 16914554
    • Harant H, Lettner N, Hofer L, Oberhauser B, de Vries JE, Lindley IJ. The translocation inhibitor CAM741 interferes with vascular cell adhesion molecule 1 signal peptide insertion at the translocon. J Biol Chem. 2006; 281(41):30492-502. PMID: 16914554
    • (2006) J Biol Chem , vol.281 , Issue.41 , pp. 30492-30502
    • Harant, H.1    Lettner, N.2    Hofer, L.3    Oberhauser, B.4    De Vries, J.E.5    Lindley, I.J.6
  • 10
    • 34347350262 scopus 로고    scopus 로고
    • Inhibition of vascular endothelial growth factor cotranslational translocation by the cyclopeptolide CAM741
    • PMID: 17369307
    • Harant H, Wolff B, Schreiner EP, Oberhauser B, Hofer L, Lettner N, et al. Inhibition of vascular endothelial growth factor cotranslational translocation by the cyclopeptolide CAM741. Mol Pharmacol. 2007; 71(6):1657-65. PMID: 17369307
    • (2007) Mol Pharmacol , vol.71 , Issue.6 , pp. 1657-1665
    • Harant, H.1    Wolff, B.2    Schreiner, E.P.3    Oberhauser, B.4    Hofer, L.5    Lettner, N.6
  • 11
    • 39149116365 scopus 로고    scopus 로고
    • Solid-phase peptide synthesis: From standard procedures to the synthesis of difficult sequences
    • PMID: 18079725
    • Coin I, Beyermann M, Bienert M. Solid-phase peptide synthesis: from standard procedures to the synthesis of difficult sequences. Nat Protoc. 2007; 2(12):3247-56. PMID: 18079725
    • (2007) Nat Protoc , vol.2 , Issue.12 , pp. 3247-3256
    • Coin, I.1    Beyermann, M.2    Bienert, M.3
  • 12
    • 55949102106 scopus 로고    scopus 로고
    • Solid-phase synthesis of a cyclodepsipeptide: Cotransin
    • PMID: 18651745
    • Coin I, Beerbaum M, Schmieder P, Bienert M, Beyermann M. Solid-phase synthesis of a cyclodepsipeptide: cotransin. Org Lett. 2008; 10(17):3857-60. doi: 10.1021/ol800855p PMID: 18651745
    • (2008) Org Lett , vol.10 , Issue.17 , pp. 3857-3860
    • Coin, I.1    Beerbaum, M.2    Schmieder, P.3    Bienert, M.4    Beyermann, M.5
  • 13
    • 66349132275 scopus 로고    scopus 로고
    • The depsipeptide technique for the solid phase peptide synthesis: From stepwise assembly to segment condensation
    • PMID: 19400123
    • Coin I, Schmieder P, Bienert M, Beyermann M. The depsipeptide technique for the solid phase peptide synthesis: from stepwise assembly to segment condensation. Adv Exp Med Biol. 2009; 611:127-8. PMID: 19400123
    • (2009) Adv Exp Med Biol , vol.611 , pp. 127-128
    • Coin, I.1    Schmieder, P.2    Bienert, M.3    Beyermann, M.4
  • 14
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • PMID: 12118079
    • Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics. 2002; 1(5):376-86. PMID: 12118079
    • (2002) Mol Cell Proteomics , vol.1 , Issue.5 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6
  • 15
    • 58149382072 scopus 로고    scopus 로고
    • Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer
    • PMID: 18816084
    • Zhang G, Fenyo D, Neubert TA. Screening for EphB signaling effectors using SILAC with a linear ion trap-orbitrap mass spectrometer. J Proteome Res. 2008; 7(11):4715-26. doi: 10.1021/pr800255a PMID: 18816084
    • (2008) J Proteome Res , vol.7 , Issue.11 , pp. 4715-4726
    • Zhang, G.1    Fenyo, D.2    Neubert, T.A.3
  • 16
    • 55249083335 scopus 로고    scopus 로고
    • Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays
    • PMID: 18698806
    • Amanchy R, Zhong J, Molina H, Chaerkady R, Iwahori A, Kalume DE, et al. Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays. J Proteome Res. 2008; 7(9):3900-10. doi: 10.1021/pr800198w PMID: 18698806
    • (2008) J Proteome Res , vol.7 , Issue.9 , pp. 3900-3910
    • Amanchy, R.1    Zhong, J.2    Molina, H.3    Chaerkady, R.4    Iwahori, A.5    Kalume, D.E.6
  • 17
    • 77955445789 scopus 로고    scopus 로고
    • Identification of phosphorylation-dependent interaction partners of the adapter protein ADAP using quantitative mass spectrometry: SILAC vs (18) O-labeling
    • PMID: 20568816
    • Lange S, Sylvester M, Schumann M, Freund C, Krause E. Identification of phosphorylation-dependent interaction partners of the adapter protein ADAP using quantitative mass spectrometry: SILAC vs (18) O-labeling. J Proteome Res. 2010; 9(8):4113-22. doi: 10.1021/pr1003054 PMID: 20568816
    • (2010) J Proteome Res , vol.9 , Issue.8 , pp. 4113-4122
    • Lange, S.1    Sylvester, M.2    Schumann, M.3    Freund, C.4    Krause, E.5
  • 18
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • PMID: 19029910
    • Cox J, Mann M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol. 2008; 26(12):1367-72. doi: 10.1038/nbt.1511 PMID: 19029910
    • (2008) Nat Biotechnol , vol.26 , Issue.12 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 19
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • PMID: 10827456
    • Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000; 16(6):276-7. PMID: 10827456
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 20
    • 0021678736 scopus 로고
    • Electroblotting of multiple gels: A simple apparatus without buffer tank for rapid transfer of proteins from polyacrylamide to nitrocellulose
    • PMID: 6530508
    • Kyhse-Andersen J. Electroblotting of multiple gels: a simple apparatus without buffer tank for rapid transfer of proteins from polyacrylamide to nitrocellulose. J Biochem Biophys Methods. 1984; 10(3-4):203-9. PMID: 6530508
    • (1984) J Biochem Biophys Methods , vol.10 , Issue.3-4 , pp. 203-209
    • Kyhse-Andersen, J.1
  • 21
    • 0022731304 scopus 로고
    • ALGORITHM 643: FEXACT: A FORTRAN subroutine for Fisher's exact test on unordered r\×c contingency tables
    • Mehta CR, Patel NR. ALGORITHM 643: FEXACT: a FORTRAN subroutine for Fisher's exact test on unordered r\×c contingency tables. ACM Trans Math Softw. 1986; 12(2):154-61.
    • (1986) ACM Trans Math Softw , vol.12 , Issue.2 , pp. 154-161
    • Mehta, C.R.1    Patel, N.R.2
  • 22
    • 0023389781 scopus 로고
    • Multiple topogenic sequences in bovine opsin
    • PMID: 2956606
    • Audigier Y, Friedlander M, Blobel G. Multiple topogenic sequences in bovine opsin. Proc Natl Acad Sci U S A. 1987; 84(16):5783-7. PMID: 2956606
    • (1987) Proc Natl Acad Sci U S A , vol.84 , Issue.16 , pp. 5783-5787
    • Audigier, Y.1    Friedlander, M.2    Blobel, G.3
  • 23
    • 33747680989 scopus 로고    scopus 로고
    • The corticotropin-releasing factor receptor type 2a contains an N-terminal pseudo signal peptide
    • PMID: 16766521
    • Rutz C, Renner A, Alken M, Schulz K, Beyermann M, Wiesner B, et al. The corticotropin-releasing factor receptor type 2a contains an N-terminal pseudo signal peptide. J Biol Chem. 2006; 281(34):24910-21. PMID: 16766521
    • (2006) J Biol Chem , vol.281 , Issue.34 , pp. 24910-24921
    • Rutz, C.1    Renner, A.2    Alken, M.3    Schulz, K.4    Beyermann, M.5    Wiesner, B.6
  • 24
    • 77958453912 scopus 로고    scopus 로고
    • The pseudo signal peptide of the corticotropin-releasing factor receptor type 2a decreases receptor expression and prevents Gi-mediated inhibition of adenylyl cyclase activity
    • PMID: 20682782
    • Schulz K, Rutz C, Westendorf C, Ridelis I, Vogelbein S, Furkert J, et al. The pseudo signal peptide of the corticotropin-releasing factor receptor type 2a decreases receptor expression and prevents Gi-mediated inhibition of adenylyl cyclase activity. J Biol Chem. 2010; 285(43):32878-87. doi: 10.1074/jbc.M110.129627 PMID: 20682782
    • (2010) J Biol Chem , vol.285 , Issue.43 , pp. 32878-32887
    • Schulz, K.1    Rutz, C.2    Westendorf, C.3    Ridelis, I.4    Vogelbein, S.5    Furkert, J.6
  • 25
    • 0034641751 scopus 로고    scopus 로고
    • Nucleocytoplasmic translocation of Stat1 is regulated by a leucine-rich export signal in the coiled-coil domain
    • PMID: 10973496
    • Begitt A, Meyer T, van Rossum M, Vinkemeier U. Nucleocytoplasmic translocation of Stat1 is regulated by a leucine-rich export signal in the coiled-coil domain. Proc Natl Acad Sci U S A. 2000; 97(19):10418-23. PMID: 10973496
    • (2000) Proc Natl Acad Sci U S A , vol.97 , Issue.19 , pp. 10418-10423
    • Begitt, A.1    Meyer, T.2    Van Rossum, M.3    Vinkemeier, U.4
  • 26
    • 84866733521 scopus 로고    scopus 로고
    • Plasminogen activator inhibitor-1 and thrombotic cerebrovascular diseases
    • PMID: 22879095
    • Tjarnlund-Wolf A, Brogren H, Lo EH, Wang X. Plasminogen activator inhibitor-1 and thrombotic cerebrovascular diseases. Stroke. 2012; 43(10):2833-9. PMID: 22879095
    • (2012) Stroke , vol.43 , Issue.10 , pp. 2833-2839
    • Tjarnlund-Wolf, A.1    Brogren, H.2    Lo, E.H.3    Wang, X.4
  • 27
    • 84859501126 scopus 로고    scopus 로고
    • PAI-1, progress in understanding the clinical problem and its aetiology
    • PMID: 22360729
    • Iwaki T, Urano T, Umemura K. PAI-1, progress in understanding the clinical problem and its aetiology. Br J Haematol. 2012; 157(3):291-8. doi: 10.1111/j.1365-2141.2012.09074.x PMID: 22360729
    • (2012) Br J Haematol , vol.157 , Issue.3 , pp. 291-298
    • Iwaki, T.1    Urano, T.2    Umemura, K.3
  • 28
    • 0033978227 scopus 로고    scopus 로고
    • The CREC family, a novel family of multiple EF-hand, low-affinity Ca(2+)-binding proteins localised to the secretory pathway of mammalian cells
    • PMID: 10648803
    • Honore B, Vorum H. The CREC family, a novel family of multiple EF-hand, low-affinity Ca(2+)-binding proteins localised to the secretory pathway of mammalian cells. FEBS Lett. 2000; 466(1):11-8. PMID: 10648803
    • (2000) FEBS Lett , vol.466 , Issue.1 , pp. 11-18
    • Honore, B.1    Vorum, H.2
  • 29
    • 77953517944 scopus 로고    scopus 로고
    • Characterization of calumenin in mouse heart
    • PMID: 20356454
    • Sahoo SK, Kim do H. Characterization of calumenin in mouse heart. BMB Rep. 2010; 43(3):158-63. PMID: 20356454
    • (2010) BMB Rep , vol.43 , Issue.3 , pp. 158-163
    • Sahoo, S.K.1    Kim Do, H.2
  • 30
    • 4644320152 scopus 로고    scopus 로고
    • Signal peptide prediction based on analysis of experimentally verified cleavage sites
    • PMID: 15340161
    • Zhang Z, Henzel WJ. Signal peptide prediction based on analysis of experimentally verified cleavage sites. Protein Sci. 2004; 13(10):2819-24. PMID: 15340161
    • (2004) Protein Sci , vol.13 , Issue.10 , pp. 2819-2824
    • Zhang, Z.1    Henzel, W.J.2
  • 31
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: Discriminating signal peptides from transmembrane regions
    • PMID: 21959131
    • Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods. 2011; 8(10):785-6. doi: 10.1038/nmeth.1701 PMID: 21959131
    • (2011) Nat Methods , vol.8 , Issue.10 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    Von Heijne, G.3    Nielsen, H.4
  • 32
    • 0038333588 scopus 로고    scopus 로고
    • Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
    • PMID: 12665801
    • Gevaert K, Goethals M, Martens L, Van Damme J, Staes A, Thomas GR, et al. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat Biotechnol. 2003; 21(5):566-9. PMID: 12665801
    • (2003) Nat Biotechnol , vol.21 , Issue.5 , pp. 566-569
    • Gevaert, K.1    Goethals, M.2    Martens, L.3    Van Damme, J.4    Staes, A.5    Thomas, G.R.6
  • 33
    • 84863934536 scopus 로고    scopus 로고
    • Efficient secretion of small proteins in mammalian cells relies on Sec62-dependent posttranslational translocation
    • PMID: 22648169
    • Lakkaraju AK, Thankappan R, Mary C, Garrison JL, Taunton J, Strub K. Efficient secretion of small proteins in mammalian cells relies on Sec62-dependent posttranslational translocation. Mol Biol Cell. 2012; 23(14):2712-22. doi: 10.1091/mbc.E12-03-0228 PMID: 22648169
    • (2012) Mol Biol Cell , vol.23 , Issue.14 , pp. 2712-2722
    • Lakkaraju, A.K.1    Thankappan, R.2    Mary, C.3    Garrison, J.L.4    Taunton, J.5    Strub, K.6
  • 34
    • 78650374825 scopus 로고    scopus 로고
    • Insulin-like growth factor binding protein-1 in PCOS: A systematic review and meta-analysis
    • PMID: 20634211
    • Kelly CJ, Stenton SR, Lashen H. Insulin-like growth factor binding protein-1 in PCOS: a systematic review and meta-analysis. Hum Reprod Update. 2011; 17(1):4-16. doi: 10.1093/humupd/dmq027 PMID: 20634211
    • (2011) Hum Reprod Update , vol.17 , Issue.1 , pp. 4-16
    • Kelly, C.J.1    Stenton, S.R.2    Lashen, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.