-
1
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
Lewis NE, Nagarajan H, Palsson BO. Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol. 2012;10:291-305
-
(2012)
Nat Rev Microbiol.
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
2
-
-
84855929956
-
Using the reconstructed genome-scale human metabolic network to study physiology and pathology
-
Bordbar A, Palsson BO. Using the reconstructed genome-scale human metabolic network to study physiology and pathology. J Intern Med. 2012;271:131-141
-
(2012)
J Intern Med.
, vol.271
, pp. 131-141
-
-
Bordbar, A.1
Palsson, B.O.2
-
4
-
-
84907630708
-
Applying systems biology methods to the study of human physiology in extreme environments
-
Edwards LM, Thiele I. Applying systems biology methods to the study of human physiology in extreme environments. Extrem Physiol Med. 2013;2:8
-
(2013)
Extrem Physiol Med.
, vol.2
, pp. 8
-
-
Edwards, L.M.1
Thiele, I.2
-
6
-
-
79959664729
-
A metabolic model of the mitochondrion and its use in modelling diseases of the tricarboxylic acid cycle
-
Smith AC, Robinson AJ. A metabolic model of the mitochondrion and its use in modelling diseases of the tricarboxylic acid cycle. BMC Syst Biol. 2011;5:102
-
(2011)
BMC Syst Biol.
, vol.5
, pp. 102
-
-
Smith, A.C.1
Robinson, A.J.2
-
7
-
-
66249132328
-
Predicting metabolic biomarkers of human inborn errors of metabolism
-
Shlomi T, Cabili MN, Ruppin E. Predicting metabolic biomarkers of human inborn errors of metabolism. Mol Syst Biol. 2009;5:263
-
(2009)
Mol Syst Biol.
, vol.5
, pp. 263
-
-
Shlomi, T.1
Cabili, M.N.2
Ruppin, E.3
-
8
-
-
84877315835
-
A community-driven global reconstruction of human metabolism
-
Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, et al. A community-driven global reconstruction of human metabolism. Nat Biotechnol. 2013;31:419-425
-
(2013)
Nat Biotechnol.
, vol.31
, pp. 419-425
-
-
Thiele, I.1
Swainston, N.2
Fleming, R.M.3
Hoppe, A.4
Sahoo, S.5
Aurich, M.K.6
-
9
-
-
80052580351
-
Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase
-
Frezza C, Zheng L, Folger O, Rajagopalan KN, MacKenzie ED, Jerby L, et al. Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase. Nature. 2011;477:225-228
-
(2011)
Nature.
, vol.477
, pp. 225-228
-
-
Frezza, C.1
Zheng, L.2
Folger, O.3
Rajagopalan, K.N.4
Mackenzie, E.D.5
Jerby, L.6
-
10
-
-
33845269743
-
Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains
-
Hua Q, Joyce AR, Fong SS, Palsson BØ. Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains. Biotechnol Bioeng. 2006;95:992-1002
-
(2006)
Biotechnol Bioeng.
, vol.95
, pp. 992-1002
-
-
Hua, Q.1
Joyce, A.R.2
Fong, S.S.3
Palsson B.Ø4
-
11
-
-
77954926596
-
Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders
-
Beall CM, Cavalleri GL, Deng L, Elston RC, Gao Y, Knight J, et al. Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci U S A. 2010;107:11459-11464
-
(2010)
Proc Natl Acad Sci U S A.
, vol.107
, pp. 11459-11464
-
-
Beall, C.M.1
Cavalleri, G.L.2
Deng, L.3
Elston, R.C.4
Gao, Y.5
Knight, J.6
-
12
-
-
77954319020
-
Sequencing of 50 human exomes reveals adaptation to high altitude
-
Yi X, Liang Y, Huerta-Sanchez E, Jin X, Cuo ZX, Pool JE, et al. Sequencing of 50 human exomes reveals adaptation to high altitude. Science. 2010;329:75-78
-
(2010)
Science.
, vol.329
, pp. 75-78
-
-
Yi, X.1
Liang, Y.2
Huerta-Sanchez, E.3
Jin, X.4
Cuo, Z.X.5
Pool, J.E.6
-
13
-
-
4544288672
-
Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data
-
Vo TD, Greenberg HJ, Palsson BO. Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data. J Biol Chem. 2004;279:39532-39540
-
(2004)
J Biol Chem.
, vol.279
, pp. 39532-39540
-
-
Vo, T.D.1
Greenberg, H.J.2
Palsson, B.O.3
-
14
-
-
15844387127
-
Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet
-
Thiele I, Price ND, Vo TD, Palsson BØ. Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet. J Biol Chem. 2005;280:11683-11695
-
(2005)
J Biol Chem.
, vol.280
, pp. 11683-11695
-
-
Thiele, I.1
Price, N.D.2
Vo, T.D.3
Palsson B.Ø4
-
15
-
-
0026516223
-
Network analysis of intermediary metabolism using linear optimization
-
I. Development of mathematical formalism
-
Savinell JM, Palsson BO. Network analysis of intermediary metabolism using linear optimization. I. Development of mathematical formalism. J Theor Biol. 1992;154:421-454
-
(1992)
J Theor Biol.
, vol.154
, pp. 421-454
-
-
Savinell, J.M.1
Palsson, B.O.2
-
16
-
-
80455156250
-
Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae
-
Ghosh A, Zhao H, Price ND. Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae. PLoS One. 2011;6:e27316
-
(2011)
PLoS One.
, vol.6
, pp. e27316
-
-
Ghosh, A.1
Zhao, H.2
Price, N.D.3
-
17
-
-
0027223982
-
Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates
-
Varma A, Boesch BW, Palsson BO. Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. Appl Environ Microbiol. 1993;59:2465-2473
-
(1993)
Appl Environ Microbiol.
, vol.59
, pp. 2465-2473
-
-
Varma, A.1
Boesch, B.W.2
Palsson, B.O.3
-
18
-
-
1642457253
-
The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
-
Mahadevan R, Schilling CH. The effects of alternate optimal solutions in constraint-based genome-scale metabolic models. Metab Eng. 2003;5:264-276
-
(2003)
Metab Eng.
, vol.5
, pp. 264-276
-
-
Mahadevan, R.1
Schilling, C.H.2
-
19
-
-
0031679770
-
Direction choice for accelerated convergence in hit-And-run sampling
-
Kaufman DE, Smith RL. Direction choice for accelerated convergence in hit-And-run sampling. Oper Res. 1998;46:84-95
-
(1998)
Oper Res.
, vol.46
, pp. 84-95
-
-
Kaufman, D.E.1
Smith, R.L.2
-
20
-
-
0033847443
-
Cell death, tissue hypoxia and the progression of heart failure
-
Sabbah HN, Sharov VG, Goldstein S. Cell death, tissue hypoxia and the progression of heart failure. Heart Fail Rev. 2000;5:131-138
-
(2000)
Heart Fail Rev.
, vol.5
, pp. 131-138
-
-
Sabbah, H.N.1
Sharov, V.G.2
Goldstein, S.3
-
21
-
-
61849161099
-
From mountain to bedside: Understanding the clinical relevance of human acclimatisation to high-Altitude hypoxia
-
quiz 626
-
Martin D, Windsor J. From mountain to bedside: understanding the clinical relevance of human acclimatisation to high-Altitude hypoxia. Postgrad Med J. 2008;84:622-627; quiz 626
-
(2008)
Postgrad Med J.
, vol.84
, pp. 622-627
-
-
Martin, D.1
Windsor, J.2
-
22
-
-
4344717835
-
Anaemia and heart failure
-
Coats AJ. Anaemia and heart failure. Heart. 2004;90:977-979
-
(2004)
Heart.
, vol.90
, pp. 977-979
-
-
Coats, A.J.1
-
23
-
-
3042831462
-
Haemoglobin predicts survival in patients with chronic heart failure: A substudy of the ELITE II trial
-
Sharma R, Francis DP, Pitt B, Poole-Wilson PA, Coats AJ, Anker SD. Haemoglobin predicts survival in patients with chronic heart failure: A substudy of the ELITE II trial. Eur Heart J. 2004;25:1021-1028
-
(2004)
Eur Heart J.
, vol.25
, pp. 1021-1028
-
-
Sharma, R.1
Francis, D.P.2
Pitt, B.3
Poole-Wilson, P.A.4
Coats, A.J.5
Anker, S.D.6
-
24
-
-
33745459564
-
Hemoglobin level, chronic kidney disease, and the risks of death and hospitalization in adults with chronic heart failure: The Anemia in Chronic Heart Failure: Outcomes and Resource Utilization (ANCHOR) Study
-
Go AS, Yang J, Ackerson LM, Lepper K, Robbins S, Massie BM, et al. Hemoglobin level, chronic kidney disease, and the risks of death and hospitalization in adults with chronic heart failure: The Anemia in Chronic Heart Failure: Outcomes and Resource Utilization (ANCHOR) Study. Circulation. 2006;113:2713-2723
-
(2006)
Circulation.
, vol.113
, pp. 2713-2723
-
-
Go, A.S.1
Yang, J.2
Ackerson, L.M.3
Lepper, K.4
Robbins, S.5
Massie, B.M.6
-
26
-
-
0034629291
-
P53 induces apoptosis by caspase activation through mitochondrial cytochrome c release
-
Schuler M, Bossy-Wetzel E, Goldstein JC, Fitzgerald P, Green DR. p53 induces apoptosis by caspase activation through mitochondrial cytochrome c release. J Biol Chem. 2000;275:7337-7342
-
(2000)
J Biol Chem.
, vol.275
, pp. 7337-7342
-
-
Schuler, M.1
Bossy-Wetzel, E.2
Goldstein, J.C.3
Fitzgerald, P.4
Green, D.R.5
-
27
-
-
66449114724
-
Identification of novel VHL regulated genes by transcriptomic analysis of RCC10 renal carcinoma cells
-
Harten SK, Esteban MA, Maxwell PH. Identification of novel VHL regulated genes by transcriptomic analysis of RCC10 renal carcinoma cells. Adv Enzyme Regul. 2009;49:43-52
-
(2009)
Adv Enzyme Regul.
, vol.49
, pp. 43-52
-
-
Harten, S.K.1
Esteban, M.A.2
Maxwell, P.H.3
-
28
-
-
0013962978
-
Myocardial uptake and fractional distribution of palmitate-1 C14 by the ischemic dog heart
-
Scheuer J, Brachfeld N. Myocardial uptake and fractional distribution of palmitate-1 C14 by the ischemic dog heart. Metabolism. 1966;15:945-954
-
(1966)
Metabolism.
, vol.15
, pp. 945-954
-
-
Scheuer, J.1
Brachfeld, N.2
-
29
-
-
33745151032
-
Hypoxia-induced fatty acid transporter translocation increases fatty acid transport and contributes to lipid accumulation in the heart
-
Chabowski A, Górski J, Calles-Escandon J, Tandon NN, Bonen A. Hypoxia-induced fatty acid transporter translocation increases fatty acid transport and contributes to lipid accumulation in the heart. FEBS Lett. 2006;580:3617-3623
-
(2006)
FEBS Lett.
, vol.580
, pp. 3617-3623
-
-
Chabowski, A.1
Górski, J.2
Calles-Escandon, J.3
Tandon, N.N.4
Bonen, A.5
-
30
-
-
33644614520
-
HIF-1-mediated expression of pyruvate dehydrogenase kinase: A metabolic switch required for cellular adaptation to hypoxia
-
Kim JW, Tchernyshyov I, Semenza GL, Dang CV. HIF-1-mediated expression of pyruvate dehydrogenase kinase: A metabolic switch required for cellular adaptation to hypoxia. Cell Metab. 2006;3:177-185
-
(2006)
Cell Metab.
, vol.3
, pp. 177-185
-
-
Kim, J.W.1
Tchernyshyov, I.2
Semenza, G.L.3
Dang, C.V.4
-
31
-
-
0015196876
-
The effects of acute hypoxia on lipid synthesis in the rat heart
-
Harris P, Gloster J. The effects of acute hypoxia on lipid synthesis in the rat heart. Cardiology. 1971;56:43-47
-
(1971)
Cardiology.
, vol.56
, pp. 43-47
-
-
Harris, P.1
Gloster, J.2
-
32
-
-
0029015860
-
Inhibition of cardiolipin biosynthesis in the hypoxic rat heart
-
Cheng P, Hatch GM. Inhibition of cardiolipin biosynthesis in the hypoxic rat heart. Lipids. 1995;30:513-519
-
(1995)
Lipids.
, vol.30
, pp. 513-519
-
-
Cheng, P.1
Hatch, G.M.2
-
33
-
-
2342424061
-
Moving up in the world: Archaeologists seek to understand how and when people came to occupy the Andean and Tibetan plateaus
-
Aldenderfer M. Moving up in the world: Archaeologists seek to understand how and when people came to occupy the Andean and Tibetan plateaus. Am Sci. 2003;91:542-549
-
(2003)
Am Sci.
, vol.91
, pp. 542-549
-
-
Aldenderfer, M.1
-
34
-
-
34547468520
-
Two routes to functional adaptation: Tibetan and Andean highaltitude natives
-
Beall CM. Two routes to functional adaptation: Tibetan and Andean highaltitude natives. Proc Natl Acad Sci U S A. 2007;104(suppl 1):8655-8660
-
(2007)
Proc Natl Acad Sci U S A.
, vol.104
, pp. 8655-8660
-
-
Beall, C.M.1
-
35
-
-
84860115461
-
Metabolic adaptation to chronic hypoxia in cardiac mitochondria
-
Heather LC, Cole MA, Tan JJ, Ambrose LJ, Pope S, Abd-Jamil AH, et al. Metabolic adaptation to chronic hypoxia in cardiac mitochondria. Basic Res Cardiol. 2012;107:268
-
(2012)
Basic Res Cardiol.
, vol.107
, pp. 268
-
-
Heather, L.C.1
Cole, M.A.2
Tan, J.J.3
Ambrose, L.J.4
Pope, S.5
Abd-Jamil, A.H.6
-
36
-
-
78549275858
-
Expression profiling in progressive stages of fumarate-hydratase deficiency: The contribution of metabolic changes to tumorigenesis
-
Ashrafian H, O'Flaherty L, Adam J, Steeples V, Chung YL, East P, et al. Expression profiling in progressive stages of fumarate-hydratase deficiency: The contribution of metabolic changes to tumorigenesis. Cancer Res. 2010;70:9153-9165
-
(2010)
Cancer Res.
, vol.70
, pp. 9153-9165
-
-
Ashrafian, H.1
O'Flaherty, L.2
Adam, J.3
Steeples, V.4
Chung, Y.L.5
East, P.6
-
38
-
-
0141737071
-
Deficiency of PDK1 in cardiac muscle results in heart failure and increased sensitivity to hypoxia
-
Mora A, Davies AM, Bertrand L, Sharif I, Budas GR, Jovanovic S, et al. Deficiency of PDK1 in cardiac muscle results in heart failure and increased sensitivity to hypoxia. EMBO J. 2003;22:4666-4676
-
(2003)
EMBO J.
, vol.22
, pp. 4666-4676
-
-
Mora, A.1
Davies, A.M.2
Bertrand, L.3
Sharif, I.4
Budas, G.R.5
Jovanovic, S.6
-
39
-
-
33644622570
-
HIF-1 mediates adaptation to hypoxia by actively downregulating mitochondrial oxygen consumption
-
Papandreou I, Cairns RA, Fontana L, Lim AL, Denko NC. HIF-1 mediates adaptation to hypoxia by actively downregulating mitochondrial oxygen consumption. Cell Metab. 2006;3:187-197.
-
(2006)
Cell Metab.
, vol.3
, pp. 187-197
-
-
Papandreou, I.1
Cairns, R.A.2
Fontana, L.3
Lim, A.L.4
Denko, N.C.5
|