-
1
-
-
0020501933
-
Bronchial artery distribution in various mammals and in humans
-
PMID: 6881710
-
McLaughlin RF. Bronchial artery distribution in various mammals and in humans. Am Rev Respir Dis. 1983; 128: S57-8. PMID: 6881710
-
(1983)
Am Rev Respir Dis
, vol.128
, pp. S57-S58
-
-
McLaughlin, R.F.1
-
2
-
-
0025619232
-
Comparative anatomy of the tracheobronchial circulation
-
Dept of Surgery, Thomas Jefferson University, Philadelphia, PA 19107. discussion 562s-563s. PMID: 2127528
-
Magno M. Comparative anatomy of the tracheobronchial circulation. Eur Respir J Suppl. Dept of Surgery, Thomas Jefferson University, Philadelphia, PA 19107. 1990; 12: 557s-562s; discussion 562s-563s. PMID: 2127528
-
(1990)
Eur Respir J Suppl
, vol.12
, pp. 557s-562s
-
-
Magno, M.1
-
3
-
-
80053300921
-
Heaves, an asthma-like disease of horses
-
PMID: 21824219
-
Leclere M, Lavoie-Lamoureux A, Lavoie J-P. Heaves, an asthma-like disease of horses. Respirology. 2011; 16: 1027-46. doi: 10.1111/j.1440-1843.2011.02033.x PMID: 21824219
-
(2011)
Respirology
, vol.16
, pp. 1027-1046
-
-
Leclere, M.1
Lavoie-Lamoureux, A.2
Lavoie, J.-P.3
-
4
-
-
84855326544
-
Profiling of Differentially Expressed Genes Using Suppression Subtractive Hybridization in an Equine Model of Chronic Asthma
-
Public Library of Science; PMID: 22235296
-
Lavoie J-P, Lefebvre-Lavoie J, Leclere M, Lavoie-Lamoureux A, Chamberland A, Laprise C, et al. Profiling of Differentially Expressed Genes Using Suppression Subtractive Hybridization in an Equine Model of Chronic Asthma. PLoS One. Public Library of Science; 2012; 7: e29440. doi: 10.1371/journal.pone.0029440 PMID: 22235296
-
(2012)
PLoS One
, vol.7
, pp. e29440
-
-
Lavoie, J.-P.1
Lefebvre-Lavoie, J.2
Leclere, M.3
Lavoie-Lamoureux, A.4
Chamberland, A.5
Laprise, C.6
-
5
-
-
33947274240
-
The cellular Toll-like receptor 4 antagonist E5531 can act as an agonist in horse whole blood
-
PMID: 17320193
-
Bryant CE, Ouellette A, Lohmann K, Vandenplas M, Moore JN, Maskell DJ, et al. The cellular Toll-like receptor 4 antagonist E5531 can act as an agonist in horse whole blood. Vet Immunol Immunopathol. 2007; 116: 182-9. PMID: 17320193
-
(2007)
Vet Immunol Immunopathol
, vol.116
, pp. 182-189
-
-
Bryant, C.E.1
Ouellette, A.2
Lohmann, K.3
Vandenplas, M.4
Moore, J.N.5
Maskell, D.J.6
-
6
-
-
84866026429
-
Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
-
PMID: 22971240
-
Park K-D, Park J, Ko J, Kim B, Kim H-S, Ahn K, et al. Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. BMC Genomics. 2012; 13: 473. doi: 10.1186/1471- 2164-13-473 PMID: 22971240
-
(2012)
BMC Genomics
, vol.13
, pp. 473
-
-
Park, K.-D.1
Park, J.2
Ko, J.3
Kim, B.4
Kim, H.-S.5
Ahn, K.6
-
7
-
-
84903832216
-
Characterisation of the horse transcriptome from immunologically active tissues
-
PMID: 24860704
-
Moreton J, Malla S, Aboobaker AA, Tarlinton RE, Emes RD. Characterisation of the horse transcriptome from immunologically active tissues. PeerJ. 2014; 2: e382. doi: 10.7717/peerj.382 PMID: 24860704
-
(2014)
Peer J
, vol.2
, pp. e382
-
-
Moreton, J.1
Malla, S.2
Aboobaker, A.A.3
Tarlinton, R.E.4
Emes, R.D.5
-
8
-
-
84931573645
-
Use of laser capture microdissection for the assessment of equine lamellar basal epithelial cell signalling in the early stages of laminitis
-
n/a-n/a
-
Leise BS, Watts M, Roy S, Yilmaz S, Alder H, Belknap JK. Use of laser capture microdissection for the assessment of equine lamellar basal epithelial cell signalling in the early stages of laminitis. Equine Vet J. 2014; n/a-n/a.
-
(2014)
Equine Vet J
-
-
Leise, B.S.1
Watts, M.2
Roy, S.3
Yilmaz, S.4
Alder, H.5
Belknap, J.K.6
-
9
-
-
84886061966
-
Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse
-
Public Library of Science
-
Bellone RR, Holl H, Setaluri V, Devi S, Maddodi N, Archer S, et al. Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse. PLoS One. Public Library of Science; 2013; 8: e78280.
-
(2013)
PLoS One
, vol.8
, pp. e78280
-
-
Bellone, R.R.1
Holl, H.2
Setaluri, V.3
Devi, S.4
Maddodi, N.5
Archer, S.6
-
10
-
-
84880787872
-
Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing
-
Public Library of Science; PMID: 23922931
-
Coleman SJ, Zeng Z, Hestand MS, Liu J, Macleod JN. Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing. PLoS One. Public Library of Science; 2013; 8: e70125. doi: 10.1371/ journal.pone.0070125 PMID: 23922931
-
(2013)
PLoS One
, vol.8
, pp. e70125
-
-
Coleman, S.J.1
Zeng, Z.2
Hestand, M.S.3
Liu, J.4
Macleod, J.N.5
-
11
-
-
78449303652
-
Structural annotation of equine protein-coding genes determined by mRNA sequencing
-
Blackwell Publishing Ltd; PMID: 21070285
-
Coleman SJ, Zeng Z, Wang K, Luo S, Khrebtukova I, Mienaltowski MJ, et al. Structural annotation of equine protein-coding genes determined by mRNA sequencing. Anim Genet. Blackwell Publishing Ltd; 2010; 41: 121-130. doi: 10.1111/j.1365-2052.2010.02118.x PMID: 21070285
-
(2010)
Anim Genet
, vol.41
, pp. 121-130
-
-
Coleman, S.J.1
Zeng, Z.2
Wang, K.3
Luo, S.4
Khrebtukova, I.5
Mienaltowski, M.J.6
-
12
-
-
77953223645
-
Gene expression profiling from leukocytes of horses affected by osteochondrosis
-
Wiley Subscription Services, Inc., A Wiley Company; PMID: 20108324
-
Serteyn D, Piquemal D, Vanderheyden L, Lejeune J-P, Verwilghen D, Sandersen C. Gene expression profiling from leukocytes of horses affected by osteochondrosis. J Orthop Res. Wiley Subscription Services, Inc., A Wiley Company; 2010; 28: 965-970. doi: 10.1002/jor.21089 PMID: 20108324
-
(2010)
J Orthop Res
, vol.28
, pp. 965-970
-
-
Serteyn, D.1
Piquemal, D.2
Vanderheyden, L.3
Lejeune, J.-P.4
Verwilghen, D.5
Sandersen, C.6
-
13
-
-
84896697227
-
RNA Sequencing of the Exercise Transcriptome in Equine Athletes
-
Public Library of Science; PMID: 24391776
-
Capomaccio S, Vitulo N, Verini-Supplizi A, Barcaccia G, Albiero A, D'Angelo M, et al. RNA Sequencing of the Exercise Transcriptome in Equine Athletes. PLoS One. Public Library of Science; 2013; 8: e83504. doi: 10.1371/journal.pone.0083504 PMID: 24391776
-
(2013)
PLoS One
, vol.8
, pp. e83504
-
-
Capomaccio, S.1
Vitulo, N.2
Verini-Supplizi, A.3
Barcaccia, G.4
Albiero, A.5
D'Angelo, M.6
-
14
-
-
84873653547
-
Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq
-
Public Library of Science; PMID: 23409192
-
Das PJ, McCarthy F, Vishnoi M, Paria N, Gresham C, Li G, et al. Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq. PLoS One. Public Library of Science; 2013; 8: e56535. doi: 10.1371/journal.pone.0056535 PMID: 23409192
-
(2013)
PLoS One
, vol.8
, pp. e56535
-
-
Das, P.J.1
McCarthy, F.2
Vishnoi, M.3
Paria, N.4
Gresham, C.5
Li, G.6
-
15
-
-
84899899581
-
RNA-Seq Transcriptome Profiling of Equine Inner Cell Mass and Trophectoderm
-
PMID: 24478389
-
Iqbal K, Chitwood JL, Meyers-Brown GA, Roser JF, Ross PJ. RNA-Seq Transcriptome Profiling of Equine Inner Cell Mass and Trophectoderm. Biol Reprod. 2014; 90: 61. doi: 10.1095/biolreprod.113. 113928 PMID: 24478389
-
(2014)
Biol Reprod
, vol.90
, pp. 61
-
-
Iqbal, K.1
Chitwood, J.L.2
Meyers-Brown, G.A.3
Roser, J.F.4
Ross, P.J.5
-
16
-
-
77953721195
-
Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training
-
PMID: 20573200
-
McGivney B, McGettigan P, Browne J, Evans A, Fonseca R, Loftus B, et al. Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training. BMC Genomics. 2010; 11: 398. doi: 10.1186/1471-2164-11-398 PMID: 20573200
-
(2010)
BMC Genomics
, vol.11
, pp. 398
-
-
McGivney, B.1
McGettigan, P.2
Browne, J.3
Evans, A.4
Fonseca, R.5
Loftus, B.6
-
17
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
PMID: 19015660
-
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009; 10: 57-63. doi: 10.1038/nrg2484 PMID: 19015660
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
18
-
-
80052960863
-
Next-generation transcriptome assembly
-
Nature Publishing Group; PMID: 21897427
-
Martin JA, Wang Z. Next-generation transcriptome assembly. Nat Rev Genet. Nature Publishing Group; 2011; 12: 671-82. doi: 10.1038/nrg3068 PMID: 21897427
-
(2011)
Nat Rev Genet
, vol.12
, pp. 671-682
-
-
Martin, J.A.1
Wang, Z.2
-
19
-
-
84902474663
-
SOAPdenovo-Trans: De Novo Transcriptome Assembly with Short RNA-Seq Reads
-
Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, et al. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics. 2014;
-
(2014)
Bioinformatics
-
-
Xie, Y.1
Wu, G.2
Tang, J.3
Luo, R.4
Patterson, J.5
Liu, S.6
-
21
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Nature Publishing Group; PMID: 20436464
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. Nature Publishing Group; 2010; 28: 511-5. doi: 10.1038/nbt.1621 PMID: 20436464
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
-
22
-
-
84880266648
-
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
-
Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; PMID: 23845962
-
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2013; 8: 1494-1512. doi: 10.1038/nprot.2013.084 PMID: 23845962
-
(2013)
Nat Protoc
, vol.8
, pp. 1494-1512
-
-
Haas, B.J.1
Papanicolaou, A.2
Yassour, M.3
Grabherr, M.4
Blood, P.D.5
Bowden, J.6
-
23
-
-
80051941094
-
Identification of novel transcripts in annotated genomes using RNA-Seq
-
PMID: 21697122
-
Roberts A, Pimentel H, Trapnell C, Pachter L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics. 2011; 27: 2325-9. doi: 10.1093/bioinformatics/btr355 PMID: 21697122
-
(2011)
Bioinformatics
, vol.27
, pp. 2325-2329
-
-
Roberts, A.1
Pimentel, H.2
Trapnell, C.3
Pachter, L.4
-
24
-
-
84887357865
-
Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing
-
PMID: 24225384
-
Weikard R, Hadlich F, Kuehn C. Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing. BMC Genomics. 2013; 14: 789. doi: 10.1186/1471-2164-14-789 PMID: 24225384
-
(2013)
BMC Genomics
, vol.14
, pp. 789
-
-
Weikard, R.1
Hadlich, F.2
Kuehn, C.3
-
25
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
PMID: 21572440
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson D A, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011; 29: 644-52. doi: 10. 1038/nbt.1883 PMID: 21572440
-
(2011)
Nat Biotechnol
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
-
26
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
PMID: 18978772
-
Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, et al. Alternative isoform regulation in human tissue transcriptomes. Nature. 2008; 456: 470-6. doi: 10.1038/nature07509 PMID: 18978772
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
-
27
-
-
84876093812
-
Isoform level expression profiles provide better cancer signatures than gene level expression profiles
-
PMID: 23594586
-
Zhang Z, Pal S, Bi Y, Tchou J, Davuluri R. Isoform level expression profiles provide better cancer signatures than gene level expression profiles. Genome Med. 2013; 5: 33. doi: 10.1186/gm437 PMID: 23594586
-
(2013)
Genome Med
, vol.5
, pp. 33
-
-
Zhang, Z.1
Pal, S.2
Bi, Y.3
Tchou, J.4
Davuluri, R.5
-
28
-
-
84872198346
-
Differential analysis of gene regulation at transcript resolution with RNA-seq
-
Nature Publishing Group; PMID: 23222703
-
Trapnell C, Hendrickson DG, Sauvageau M, Goff L, Rinn JL, Pachter L. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol. Nature Publishing Group; 2013; 31: 46-53. doi: 10.1038/nbt.2450 PMID: 23222703
-
(2013)
Nat Biotechnol
, vol.31
, pp. 46-53
-
-
Trapnell, C.1
Hendrickson, D.G.2
Sauvageau, M.3
Goff, L.4
Rinn, J.L.5
Pachter, L.6
-
29
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Nature Publishing Group; PMID: 18978789
-
Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet. Nature Publishing Group; 2008; 40: 1413-1415. doi: 10.1038/ng.259 PMID: 18978789
-
(2008)
Nat Genet
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
30
-
-
77950460661
-
Understanding mechanisms underlying human gene expression variation with RNA sequencing
-
Macmillan Publishers Limited. All rights reserved; PMID: 20220758
-
Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, et al. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. Macmillan Publishers Limited. All rights reserved; 2010; 464: 768-772. doi: 10.1038/nature08872 PMID: 20220758
-
(2010)
Nature
, vol.464
, pp. 768-772
-
-
Pickrell, J.K.1
Marioni, J.C.2
Pai, A.A.3
Degner, J.F.4
Engelhardt, B.E.5
Nkadori, E.6
-
31
-
-
77950458649
-
Transcriptome genetics using second generation sequencing in a Caucasian population
-
Macmillan Publishers Limited. All rights reserved; PMID: 20220756
-
Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Lach RP, Ingle C, Nisbett J, et al. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature. Macmillan Publishers Limited. All rights reserved; 2010; 464: 773-777. doi: 10.1038/nature08903 PMID: 20220756
-
(2010)
Nature
, vol.464
, pp. 773-777
-
-
Montgomery, S.B.1
Sammeth, M.2
Gutierrez-Arcelus, M.3
Lach, R.P.4
Ingle, C.5
Nisbett, J.6
-
32
-
-
0014506588
-
Lymphoid cellular responses in the blood after immunization in man
-
PMID: 5778787
-
Crowther D, Fairley GH, Sewell RL. Lymphoid cellular responses in the blood after immunization in man. J Exp Med. 1969; 129: 849-869. PMID: 5778787
-
(1969)
J Exp Med
, vol.129
, pp. 849-869
-
-
Crowther, D.1
Fairley, G.H.2
Sewell, R.L.3
-
33
-
-
84884591471
-
Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction
-
Elsevier B.V.; PMID: 23972861
-
Lanz S, Gerber V, Marti E, Rettmer H, Klukowska-Rötzler J, Gottstein B, et al. Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction. Vet Immunol Immunopathol. Elsevier B.V.; 2013; 155: 229-37. doi: 10.1016/j.vetimm. 2013.07.005 PMID: 23972861
-
(2013)
Vet Immunol Immunopathol
, vol.155
, pp. 229-237
-
-
Lanz, S.1
Gerber, V.2
Marti, E.3
Rettmer, H.4
Klukowska-Rötzler, J.5
Gottstein, B.6
-
34
-
-
36248973193
-
Modulation of allergy incidence in icelandic horses is associated with a change in IL-4-producing T cells
-
PMID: 17671392
-
Hamza E, Doherr MG, Bertoni G, Jungi TW, Marti E. Modulation of allergy incidence in icelandic horses is associated with a change in IL-4-producing T cells. Int Arch Allergy Immunol. 2007; 144: 325-37. PMID: 17671392
-
(2007)
Int Arch Allergy Immunol
, vol.144
, pp. 325-337
-
-
Hamza, E.1
Doherr, M.G.2
Bertoni, G.3
Jungi, T.W.4
Marti, E.5
-
35
-
-
0036635354
-
Evaluation of nebulised hay dust suspensions (HDS) for the diagnosis and investigation of heaves. 1: Preparation and composition of HDS
-
PMID: 12117103
-
Pirie RS, McLachlan G, McGorum BC. Evaluation of nebulised hay dust suspensions (HDS) for the diagnosis and investigation of heaves. 1: Preparation and composition of HDS. Equine Vet J. 2002; 34: 332-336. PMID: 12117103
-
(2002)
Equine Vet J
, vol.34
, pp. 332-336
-
-
Pirie, R.S.1
McLachlan, G.2
McGorum, B.C.3
-
36
-
-
77649272027
-
Identification and characterisation of an immunodiagnostic marker for cyathostomin developing stage larvae
-
PMID: 19703459
-
McWilliam HEG, Nisbet AJ, Dowdall SMJ, Hodgkinson JE, Matthews JB. Identification and characterisation of an immunodiagnostic marker for cyathostomin developing stage larvae. Int J Parasitol. 2010; 40: 265-75. doi: 10.1016/j.ijpara.2009.08.004 PMID: 19703459
-
(2010)
Int J Parasitol
, vol.40
, pp. 265-275
-
-
McWilliam, H.E.G.1
Nisbet, A.J.2
Dowdall, S.M.J.3
Hodgkinson, J.E.4
Matthews, J.B.5
-
37
-
-
70449379045
-
Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
-
(80-). PMID: 19892987
-
Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, et al. Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse. Science (80-). 2009; 326: 865-867. doi: 10.1126/science.1178158 PMID: 19892987
-
(2009)
Science
, vol.326
, pp. 865-867
-
-
Wade, C.M.1
Giulotto, E.2
Sigurdsson, S.3
Zoli, M.4
Gnerre, S.5
Imsland, F.6
-
38
-
-
84870837088
-
The GEM mapper: Fast, accurate and versatile alignment by filtration
-
Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved
-
Marco-Sola S, Sammeth M, Guigo R, Ribeca P. The GEM mapper: fast, accurate and versatile alignment by filtration. Nat Meth. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2012; 9: 1185-1188.
-
(2012)
Nat Meth
, vol.9
, pp. 1185-1188
-
-
Marco-Sola, S.1
Sammeth, M.2
Guigo, R.3
Ribeca, P.4
-
39
-
-
84865074382
-
RSeQC: Quality control of RNA-seq experiments
-
PMID: 22743226
-
Wang L, Wang S, Li W. RSeQC: quality control of RNA-seq experiments. Bioinformatics. 2012; 28: 2184-2185. doi: 10.1093/bioinformatics/bts356 PMID: 22743226
-
(2012)
Bioinformatics
, vol.28
, pp. 2184-2185
-
-
Wang, L.1
Wang, S.2
Li, W.3
-
40
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Nature Publishing Group; PMID: 22383036
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. Nature Publishing Group; 2012; 7: 562-78. doi: 10.1038/nprot.2012.016 PMID: 22383036
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
Kelley, D.R.6
-
41
-
-
13444306641
-
NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
PMID: 15608248
-
Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005; 33: D501-D504. PMID: 15608248
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D501-D504
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
42
-
-
0025183708
-
Basic local alignment search tool
-
PMID: 2231712
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990; 215: 403-410. PMID: 2231712
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
43
-
-
34547582418
-
CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
-
PMID: 17631615
-
Kong L, Zhang Y, Ye Z-Q, Liu X-Q, Zhao S-Q, Wei L, et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 2007; 35: W345-W349. PMID: 17631615
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W345-W349
-
-
Kong, L.1
Zhang, Y.2
Ye, Z.-Q.3
Liu, X.-Q.4
Zhao, S.-Q.5
Wei, L.6
-
44
-
-
84865022311
-
Primer3-new capabilities and interfaces
-
Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, et al. Primer3-new capabilities and interfaces. Nucleic Acids Res. 2012; 40.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Untergasser, A.1
Cutcutache, I.2
Koressaar, T.3
Ye, J.4
Faircloth, B.C.5
Remm, M.6
-
45
-
-
34447321852
-
Enhancements and modifications of primer design program Primer3
-
PMID: 17379693
-
Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics. 2007; 23: 1289-1291. PMID: 17379693
-
(2007)
Bioinformatics
, vol.23
, pp. 1289-1291
-
-
Koressaar, T.1
Remm, M.2
-
46
-
-
0031955518
-
Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment
-
PMID: 9521921
-
Ewing B, Hillier L, Wendl MC, Green P. Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment. Genome Res. 1998; 8: 175-185. PMID: 9521921
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
47
-
-
0031978181
-
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
-
PMID: 9521922
-
Ewing B, Green P. Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities. Genome Res. 1998; 8: 186-194. PMID: 9521922
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
48
-
-
2442707676
-
The Ensembl Automatic Gene Annotation System
-
PMID: 15123590
-
Curwen V, Eyras E, Andrews TD, Clarke L, Mongin E, Searle SMJ, et al. The Ensembl Automatic Gene Annotation System. Genome Res. 2004; 14: 942-950. PMID: 15123590
-
(2004)
Genome Res
, vol.14
, pp. 942-950
-
-
Curwen, V.1
Eyras, E.2
Andrews, T.D.3
Clarke, L.4
Mongin, E.5
Searle, S.M.J.6
-
49
-
-
84859881856
-
Gnomon-NCBI eukaryotic gene prediction tool
-
Souvorov A, Kapustin Y, Kiryutin B, Chetvernin V, Tatusova T, Lipman D. Gnomon-NCBI eukaryotic gene prediction tool. Natl Cent Biotechnol Inf. 2010; 1-24.
-
(2010)
Natl Cent Biotechnol Inf
, pp. 1-24
-
-
Souvorov, A.1
Kapustin, Y.2
Kiryutin, B.3
Chetvernin, V.4
Tatusova, T.5
Lipman, D.6
-
50
-
-
84865689685
-
The Reference Sequence (RefSeq) Database
-
McEntyre J, Ostell J, editors. Bethesda (MD): National Center for Biotechnology Information (US)
-
Pruitt K, Brown G, Tatusova T, Maglott D. The Reference Sequence (RefSeq) Database. In: McEntyre J, Ostell J, editors. The NCBI Handbook. Updated 20. Bethesda (MD): National Center for Biotechnology Information (US); 2002. pp. 1-24.
-
(2002)
The NCBI Handbook. Updated 20
, pp. 1-24
-
-
Pruitt, K.1
Brown, G.2
Tatusova, T.3
Maglott, D.4
-
51
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
PMID: 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009; 25: 2078-2079. doi: 10.1093/bioinformatics/btp352 PMID: 19505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
52
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
PMID: 16381842
-
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 2006; 34: D187-D191. PMID: 16381842
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D187-D191
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
Boeckmann, B.6
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