메뉴 건너뛰기




Volumn 10, Issue 3, 2015, Pages

The transcriptome of equine peripheral blood mononuclear cells

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME; MESSENGER RNA;

EID: 84925797585     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0122011     Document Type: Article
Times cited : (16)

References (52)
  • 1
    • 0020501933 scopus 로고
    • Bronchial artery distribution in various mammals and in humans
    • PMID: 6881710
    • McLaughlin RF. Bronchial artery distribution in various mammals and in humans. Am Rev Respir Dis. 1983; 128: S57-8. PMID: 6881710
    • (1983) Am Rev Respir Dis , vol.128 , pp. S57-S58
    • McLaughlin, R.F.1
  • 2
    • 0025619232 scopus 로고
    • Comparative anatomy of the tracheobronchial circulation
    • Dept of Surgery, Thomas Jefferson University, Philadelphia, PA 19107. discussion 562s-563s. PMID: 2127528
    • Magno M. Comparative anatomy of the tracheobronchial circulation. Eur Respir J Suppl. Dept of Surgery, Thomas Jefferson University, Philadelphia, PA 19107. 1990; 12: 557s-562s; discussion 562s-563s. PMID: 2127528
    • (1990) Eur Respir J Suppl , vol.12 , pp. 557s-562s
    • Magno, M.1
  • 3
    • 80053300921 scopus 로고    scopus 로고
    • Heaves, an asthma-like disease of horses
    • PMID: 21824219
    • Leclere M, Lavoie-Lamoureux A, Lavoie J-P. Heaves, an asthma-like disease of horses. Respirology. 2011; 16: 1027-46. doi: 10.1111/j.1440-1843.2011.02033.x PMID: 21824219
    • (2011) Respirology , vol.16 , pp. 1027-1046
    • Leclere, M.1    Lavoie-Lamoureux, A.2    Lavoie, J.-P.3
  • 4
    • 84855326544 scopus 로고    scopus 로고
    • Profiling of Differentially Expressed Genes Using Suppression Subtractive Hybridization in an Equine Model of Chronic Asthma
    • Public Library of Science; PMID: 22235296
    • Lavoie J-P, Lefebvre-Lavoie J, Leclere M, Lavoie-Lamoureux A, Chamberland A, Laprise C, et al. Profiling of Differentially Expressed Genes Using Suppression Subtractive Hybridization in an Equine Model of Chronic Asthma. PLoS One. Public Library of Science; 2012; 7: e29440. doi: 10.1371/journal.pone.0029440 PMID: 22235296
    • (2012) PLoS One , vol.7 , pp. e29440
    • Lavoie, J.-P.1    Lefebvre-Lavoie, J.2    Leclere, M.3    Lavoie-Lamoureux, A.4    Chamberland, A.5    Laprise, C.6
  • 6
    • 84866026429 scopus 로고    scopus 로고
    • Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
    • PMID: 22971240
    • Park K-D, Park J, Ko J, Kim B, Kim H-S, Ahn K, et al. Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. BMC Genomics. 2012; 13: 473. doi: 10.1186/1471- 2164-13-473 PMID: 22971240
    • (2012) BMC Genomics , vol.13 , pp. 473
    • Park, K.-D.1    Park, J.2    Ko, J.3    Kim, B.4    Kim, H.-S.5    Ahn, K.6
  • 7
    • 84903832216 scopus 로고    scopus 로고
    • Characterisation of the horse transcriptome from immunologically active tissues
    • PMID: 24860704
    • Moreton J, Malla S, Aboobaker AA, Tarlinton RE, Emes RD. Characterisation of the horse transcriptome from immunologically active tissues. PeerJ. 2014; 2: e382. doi: 10.7717/peerj.382 PMID: 24860704
    • (2014) Peer J , vol.2 , pp. e382
    • Moreton, J.1    Malla, S.2    Aboobaker, A.A.3    Tarlinton, R.E.4    Emes, R.D.5
  • 8
    • 84931573645 scopus 로고    scopus 로고
    • Use of laser capture microdissection for the assessment of equine lamellar basal epithelial cell signalling in the early stages of laminitis
    • n/a-n/a
    • Leise BS, Watts M, Roy S, Yilmaz S, Alder H, Belknap JK. Use of laser capture microdissection for the assessment of equine lamellar basal epithelial cell signalling in the early stages of laminitis. Equine Vet J. 2014; n/a-n/a.
    • (2014) Equine Vet J
    • Leise, B.S.1    Watts, M.2    Roy, S.3    Yilmaz, S.4    Alder, H.5    Belknap, J.K.6
  • 9
    • 84886061966 scopus 로고    scopus 로고
    • Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse
    • Public Library of Science
    • Bellone RR, Holl H, Setaluri V, Devi S, Maddodi N, Archer S, et al. Evidence for a Retroviral Insertion in TRPM1 as the Cause of Congenital Stationary Night Blindness and Leopard Complex Spotting in the Horse. PLoS One. Public Library of Science; 2013; 8: e78280.
    • (2013) PLoS One , vol.8 , pp. e78280
    • Bellone, R.R.1    Holl, H.2    Setaluri, V.3    Devi, S.4    Maddodi, N.5    Archer, S.6
  • 10
    • 84880787872 scopus 로고    scopus 로고
    • Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing
    • Public Library of Science; PMID: 23922931
    • Coleman SJ, Zeng Z, Hestand MS, Liu J, Macleod JN. Analysis of Unannotated Equine Transcripts Identified by mRNA Sequencing. PLoS One. Public Library of Science; 2013; 8: e70125. doi: 10.1371/ journal.pone.0070125 PMID: 23922931
    • (2013) PLoS One , vol.8 , pp. e70125
    • Coleman, S.J.1    Zeng, Z.2    Hestand, M.S.3    Liu, J.4    Macleod, J.N.5
  • 11
    • 78449303652 scopus 로고    scopus 로고
    • Structural annotation of equine protein-coding genes determined by mRNA sequencing
    • Blackwell Publishing Ltd; PMID: 21070285
    • Coleman SJ, Zeng Z, Wang K, Luo S, Khrebtukova I, Mienaltowski MJ, et al. Structural annotation of equine protein-coding genes determined by mRNA sequencing. Anim Genet. Blackwell Publishing Ltd; 2010; 41: 121-130. doi: 10.1111/j.1365-2052.2010.02118.x PMID: 21070285
    • (2010) Anim Genet , vol.41 , pp. 121-130
    • Coleman, S.J.1    Zeng, Z.2    Wang, K.3    Luo, S.4    Khrebtukova, I.5    Mienaltowski, M.J.6
  • 12
    • 77953223645 scopus 로고    scopus 로고
    • Gene expression profiling from leukocytes of horses affected by osteochondrosis
    • Wiley Subscription Services, Inc., A Wiley Company; PMID: 20108324
    • Serteyn D, Piquemal D, Vanderheyden L, Lejeune J-P, Verwilghen D, Sandersen C. Gene expression profiling from leukocytes of horses affected by osteochondrosis. J Orthop Res. Wiley Subscription Services, Inc., A Wiley Company; 2010; 28: 965-970. doi: 10.1002/jor.21089 PMID: 20108324
    • (2010) J Orthop Res , vol.28 , pp. 965-970
    • Serteyn, D.1    Piquemal, D.2    Vanderheyden, L.3    Lejeune, J.-P.4    Verwilghen, D.5    Sandersen, C.6
  • 13
    • 84896697227 scopus 로고    scopus 로고
    • RNA Sequencing of the Exercise Transcriptome in Equine Athletes
    • Public Library of Science; PMID: 24391776
    • Capomaccio S, Vitulo N, Verini-Supplizi A, Barcaccia G, Albiero A, D'Angelo M, et al. RNA Sequencing of the Exercise Transcriptome in Equine Athletes. PLoS One. Public Library of Science; 2013; 8: e83504. doi: 10.1371/journal.pone.0083504 PMID: 24391776
    • (2013) PLoS One , vol.8 , pp. e83504
    • Capomaccio, S.1    Vitulo, N.2    Verini-Supplizi, A.3    Barcaccia, G.4    Albiero, A.5    D'Angelo, M.6
  • 14
    • 84873653547 scopus 로고    scopus 로고
    • Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq
    • Public Library of Science; PMID: 23409192
    • Das PJ, McCarthy F, Vishnoi M, Paria N, Gresham C, Li G, et al. Stallion Sperm Transcriptome Comprises Functionally Coherent Coding and Regulatory RNAs as Revealed by Microarray Analysis and RNA-seq. PLoS One. Public Library of Science; 2013; 8: e56535. doi: 10.1371/journal.pone.0056535 PMID: 23409192
    • (2013) PLoS One , vol.8 , pp. e56535
    • Das, P.J.1    McCarthy, F.2    Vishnoi, M.3    Paria, N.4    Gresham, C.5    Li, G.6
  • 15
    • 84899899581 scopus 로고    scopus 로고
    • RNA-Seq Transcriptome Profiling of Equine Inner Cell Mass and Trophectoderm
    • PMID: 24478389
    • Iqbal K, Chitwood JL, Meyers-Brown GA, Roser JF, Ross PJ. RNA-Seq Transcriptome Profiling of Equine Inner Cell Mass and Trophectoderm. Biol Reprod. 2014; 90: 61. doi: 10.1095/biolreprod.113. 113928 PMID: 24478389
    • (2014) Biol Reprod , vol.90 , pp. 61
    • Iqbal, K.1    Chitwood, J.L.2    Meyers-Brown, G.A.3    Roser, J.F.4    Ross, P.J.5
  • 16
    • 77953721195 scopus 로고    scopus 로고
    • Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training
    • PMID: 20573200
    • McGivney B, McGettigan P, Browne J, Evans A, Fonseca R, Loftus B, et al. Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training. BMC Genomics. 2010; 11: 398. doi: 10.1186/1471-2164-11-398 PMID: 20573200
    • (2010) BMC Genomics , vol.11 , pp. 398
    • McGivney, B.1    McGettigan, P.2    Browne, J.3    Evans, A.4    Fonseca, R.5    Loftus, B.6
  • 17
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • PMID: 19015660
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009; 10: 57-63. doi: 10.1038/nrg2484 PMID: 19015660
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 18
    • 80052960863 scopus 로고    scopus 로고
    • Next-generation transcriptome assembly
    • Nature Publishing Group; PMID: 21897427
    • Martin JA, Wang Z. Next-generation transcriptome assembly. Nat Rev Genet. Nature Publishing Group; 2011; 12: 671-82. doi: 10.1038/nrg3068 PMID: 21897427
    • (2011) Nat Rev Genet , vol.12 , pp. 671-682
    • Martin, J.A.1    Wang, Z.2
  • 19
    • 84902474663 scopus 로고    scopus 로고
    • SOAPdenovo-Trans: De Novo Transcriptome Assembly with Short RNA-Seq Reads
    • Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, et al. SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinformatics. 2014;
    • (2014) Bioinformatics
    • Xie, Y.1    Wu, G.2    Tang, J.3    Luo, R.4    Patterson, J.5    Liu, S.6
  • 20
    • 84872688585 scopus 로고    scopus 로고
    • Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels
    • Schulz MH, Zerbino DR, Vingron M, Birney E. Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics.
    • Bioinformatics
    • Schulz, M.H.1    Zerbino, D.R.2    Vingron, M.3    Birney, E.4
  • 21
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Nature Publishing Group; PMID: 20436464
    • Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. Nature Publishing Group; 2010; 28: 511-5. doi: 10.1038/nbt.1621 PMID: 20436464
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1    Williams, B.A.2    Pertea, G.3    Mortazavi, A.4    Kwan, G.5    Van Baren, M.J.6
  • 22
    • 84880266648 scopus 로고    scopus 로고
    • De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
    • Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; PMID: 23845962
    • Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2013; 8: 1494-1512. doi: 10.1038/nprot.2013.084 PMID: 23845962
    • (2013) Nat Protoc , vol.8 , pp. 1494-1512
    • Haas, B.J.1    Papanicolaou, A.2    Yassour, M.3    Grabherr, M.4    Blood, P.D.5    Bowden, J.6
  • 23
    • 80051941094 scopus 로고    scopus 로고
    • Identification of novel transcripts in annotated genomes using RNA-Seq
    • PMID: 21697122
    • Roberts A, Pimentel H, Trapnell C, Pachter L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics. 2011; 27: 2325-9. doi: 10.1093/bioinformatics/btr355 PMID: 21697122
    • (2011) Bioinformatics , vol.27 , pp. 2325-2329
    • Roberts, A.1    Pimentel, H.2    Trapnell, C.3    Pachter, L.4
  • 24
    • 84887357865 scopus 로고    scopus 로고
    • Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing
    • PMID: 24225384
    • Weikard R, Hadlich F, Kuehn C. Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing. BMC Genomics. 2013; 14: 789. doi: 10.1186/1471-2164-14-789 PMID: 24225384
    • (2013) BMC Genomics , vol.14 , pp. 789
    • Weikard, R.1    Hadlich, F.2    Kuehn, C.3
  • 25
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • PMID: 21572440
    • Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson D A, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011; 29: 644-52. doi: 10. 1038/nbt.1883 PMID: 21572440
    • (2011) Nat Biotechnol , vol.29 , pp. 644-652
    • Grabherr, M.G.1    Haas, B.J.2    Yassour, M.3    Levin, J.Z.4    Thompson, D.A.5    Amit, I.6
  • 26
    • 56549101959 scopus 로고    scopus 로고
    • Alternative isoform regulation in human tissue transcriptomes
    • PMID: 18978772
    • Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, et al. Alternative isoform regulation in human tissue transcriptomes. Nature. 2008; 456: 470-6. doi: 10.1038/nature07509 PMID: 18978772
    • (2008) Nature , vol.456 , pp. 470-476
    • Wang, E.T.1    Sandberg, R.2    Luo, S.3    Khrebtukova, I.4    Zhang, L.5    Mayr, C.6
  • 27
    • 84876093812 scopus 로고    scopus 로고
    • Isoform level expression profiles provide better cancer signatures than gene level expression profiles
    • PMID: 23594586
    • Zhang Z, Pal S, Bi Y, Tchou J, Davuluri R. Isoform level expression profiles provide better cancer signatures than gene level expression profiles. Genome Med. 2013; 5: 33. doi: 10.1186/gm437 PMID: 23594586
    • (2013) Genome Med , vol.5 , pp. 33
    • Zhang, Z.1    Pal, S.2    Bi, Y.3    Tchou, J.4    Davuluri, R.5
  • 28
    • 84872198346 scopus 로고    scopus 로고
    • Differential analysis of gene regulation at transcript resolution with RNA-seq
    • Nature Publishing Group; PMID: 23222703
    • Trapnell C, Hendrickson DG, Sauvageau M, Goff L, Rinn JL, Pachter L. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol. Nature Publishing Group; 2013; 31: 46-53. doi: 10.1038/nbt.2450 PMID: 23222703
    • (2013) Nat Biotechnol , vol.31 , pp. 46-53
    • Trapnell, C.1    Hendrickson, D.G.2    Sauvageau, M.3    Goff, L.4    Rinn, J.L.5    Pachter, L.6
  • 29
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Nature Publishing Group; PMID: 18978789
    • Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet. Nature Publishing Group; 2008; 40: 1413-1415. doi: 10.1038/ng.259 PMID: 18978789
    • (2008) Nat Genet , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 30
    • 77950460661 scopus 로고    scopus 로고
    • Understanding mechanisms underlying human gene expression variation with RNA sequencing
    • Macmillan Publishers Limited. All rights reserved; PMID: 20220758
    • Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, et al. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. Macmillan Publishers Limited. All rights reserved; 2010; 464: 768-772. doi: 10.1038/nature08872 PMID: 20220758
    • (2010) Nature , vol.464 , pp. 768-772
    • Pickrell, J.K.1    Marioni, J.C.2    Pai, A.A.3    Degner, J.F.4    Engelhardt, B.E.5    Nkadori, E.6
  • 31
    • 77950458649 scopus 로고    scopus 로고
    • Transcriptome genetics using second generation sequencing in a Caucasian population
    • Macmillan Publishers Limited. All rights reserved; PMID: 20220756
    • Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Lach RP, Ingle C, Nisbett J, et al. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature. Macmillan Publishers Limited. All rights reserved; 2010; 464: 773-777. doi: 10.1038/nature08903 PMID: 20220756
    • (2010) Nature , vol.464 , pp. 773-777
    • Montgomery, S.B.1    Sammeth, M.2    Gutierrez-Arcelus, M.3    Lach, R.P.4    Ingle, C.5    Nisbett, J.6
  • 32
    • 0014506588 scopus 로고
    • Lymphoid cellular responses in the blood after immunization in man
    • PMID: 5778787
    • Crowther D, Fairley GH, Sewell RL. Lymphoid cellular responses in the blood after immunization in man. J Exp Med. 1969; 129: 849-869. PMID: 5778787
    • (1969) J Exp Med , vol.129 , pp. 849-869
    • Crowther, D.1    Fairley, G.H.2    Sewell, R.L.3
  • 33
    • 84884591471 scopus 로고    scopus 로고
    • Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction
    • Elsevier B.V.; PMID: 23972861
    • Lanz S, Gerber V, Marti E, Rettmer H, Klukowska-Rötzler J, Gottstein B, et al. Effect of hay dust extract and cyathostomin antigen stimulation on cytokine expression by PBMC in horses with recurrent airway obstruction. Vet Immunol Immunopathol. Elsevier B.V.; 2013; 155: 229-37. doi: 10.1016/j.vetimm. 2013.07.005 PMID: 23972861
    • (2013) Vet Immunol Immunopathol , vol.155 , pp. 229-237
    • Lanz, S.1    Gerber, V.2    Marti, E.3    Rettmer, H.4    Klukowska-Rötzler, J.5    Gottstein, B.6
  • 34
    • 36248973193 scopus 로고    scopus 로고
    • Modulation of allergy incidence in icelandic horses is associated with a change in IL-4-producing T cells
    • PMID: 17671392
    • Hamza E, Doherr MG, Bertoni G, Jungi TW, Marti E. Modulation of allergy incidence in icelandic horses is associated with a change in IL-4-producing T cells. Int Arch Allergy Immunol. 2007; 144: 325-37. PMID: 17671392
    • (2007) Int Arch Allergy Immunol , vol.144 , pp. 325-337
    • Hamza, E.1    Doherr, M.G.2    Bertoni, G.3    Jungi, T.W.4    Marti, E.5
  • 35
    • 0036635354 scopus 로고    scopus 로고
    • Evaluation of nebulised hay dust suspensions (HDS) for the diagnosis and investigation of heaves. 1: Preparation and composition of HDS
    • PMID: 12117103
    • Pirie RS, McLachlan G, McGorum BC. Evaluation of nebulised hay dust suspensions (HDS) for the diagnosis and investigation of heaves. 1: Preparation and composition of HDS. Equine Vet J. 2002; 34: 332-336. PMID: 12117103
    • (2002) Equine Vet J , vol.34 , pp. 332-336
    • Pirie, R.S.1    McLachlan, G.2    McGorum, B.C.3
  • 36
    • 77649272027 scopus 로고    scopus 로고
    • Identification and characterisation of an immunodiagnostic marker for cyathostomin developing stage larvae
    • PMID: 19703459
    • McWilliam HEG, Nisbet AJ, Dowdall SMJ, Hodgkinson JE, Matthews JB. Identification and characterisation of an immunodiagnostic marker for cyathostomin developing stage larvae. Int J Parasitol. 2010; 40: 265-75. doi: 10.1016/j.ijpara.2009.08.004 PMID: 19703459
    • (2010) Int J Parasitol , vol.40 , pp. 265-275
    • McWilliam, H.E.G.1    Nisbet, A.J.2    Dowdall, S.M.J.3    Hodgkinson, J.E.4    Matthews, J.B.5
  • 37
    • 70449379045 scopus 로고    scopus 로고
    • Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
    • (80-). PMID: 19892987
    • Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, et al. Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse. Science (80-). 2009; 326: 865-867. doi: 10.1126/science.1178158 PMID: 19892987
    • (2009) Science , vol.326 , pp. 865-867
    • Wade, C.M.1    Giulotto, E.2    Sigurdsson, S.3    Zoli, M.4    Gnerre, S.5    Imsland, F.6
  • 38
    • 84870837088 scopus 로고    scopus 로고
    • The GEM mapper: Fast, accurate and versatile alignment by filtration
    • Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved
    • Marco-Sola S, Sammeth M, Guigo R, Ribeca P. The GEM mapper: fast, accurate and versatile alignment by filtration. Nat Meth. Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.; 2012; 9: 1185-1188.
    • (2012) Nat Meth , vol.9 , pp. 1185-1188
    • Marco-Sola, S.1    Sammeth, M.2    Guigo, R.3    Ribeca, P.4
  • 39
    • 84865074382 scopus 로고    scopus 로고
    • RSeQC: Quality control of RNA-seq experiments
    • PMID: 22743226
    • Wang L, Wang S, Li W. RSeQC: quality control of RNA-seq experiments. Bioinformatics. 2012; 28: 2184-2185. doi: 10.1093/bioinformatics/bts356 PMID: 22743226
    • (2012) Bioinformatics , vol.28 , pp. 2184-2185
    • Wang, L.1    Wang, S.2    Li, W.3
  • 40
    • 84859885816 scopus 로고    scopus 로고
    • Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
    • Nature Publishing Group; PMID: 22383036
    • Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. Nature Publishing Group; 2012; 7: 562-78. doi: 10.1038/nprot.2012.016 PMID: 22383036
    • (2012) Nat Protoc , vol.7 , pp. 562-578
    • Trapnell, C.1    Roberts, A.2    Goff, L.3    Pertea, G.4    Kim, D.5    Kelley, D.R.6
  • 41
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • PMID: 15608248
    • Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 2005; 33: D501-D504. PMID: 15608248
    • (2005) Nucleic Acids Res , vol.33 , pp. D501-D504
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 43
    • 34547582418 scopus 로고    scopus 로고
    • CPC: Assess the protein-coding potential of transcripts using sequence features and support vector machine
    • PMID: 17631615
    • Kong L, Zhang Y, Ye Z-Q, Liu X-Q, Zhao S-Q, Wei L, et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. Nucleic Acids Res. 2007; 35: W345-W349. PMID: 17631615
    • (2007) Nucleic Acids Res , vol.35 , pp. W345-W349
    • Kong, L.1    Zhang, Y.2    Ye, Z.-Q.3    Liu, X.-Q.4    Zhao, S.-Q.5    Wei, L.6
  • 45
    • 34447321852 scopus 로고    scopus 로고
    • Enhancements and modifications of primer design program Primer3
    • PMID: 17379693
    • Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics. 2007; 23: 1289-1291. PMID: 17379693
    • (2007) Bioinformatics , vol.23 , pp. 1289-1291
    • Koressaar, T.1    Remm, M.2
  • 46
    • 0031955518 scopus 로고    scopus 로고
    • Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment
    • PMID: 9521921
    • Ewing B, Hillier L, Wendl MC, Green P. Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment. Genome Res. 1998; 8: 175-185. PMID: 9521921
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 47
    • 0031978181 scopus 로고    scopus 로고
    • Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
    • PMID: 9521922
    • Ewing B, Green P. Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities. Genome Res. 1998; 8: 186-194. PMID: 9521922
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 50
    • 84865689685 scopus 로고    scopus 로고
    • The Reference Sequence (RefSeq) Database
    • McEntyre J, Ostell J, editors. Bethesda (MD): National Center for Biotechnology Information (US)
    • Pruitt K, Brown G, Tatusova T, Maglott D. The Reference Sequence (RefSeq) Database. In: McEntyre J, Ostell J, editors. The NCBI Handbook. Updated 20. Bethesda (MD): National Center for Biotechnology Information (US); 2002. pp. 1-24.
    • (2002) The NCBI Handbook. Updated 20 , pp. 1-24
    • Pruitt, K.1    Brown, G.2    Tatusova, T.3    Maglott, D.4
  • 51
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • PMID: 19505943
    • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009; 25: 2078-2079. doi: 10.1093/bioinformatics/btp352 PMID: 19505943
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3    Fennell, T.4    Ruan, J.5    Homer, N.6
  • 52
    • 33644873213 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt): An expanding universe of protein information
    • PMID: 16381842
    • Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 2006; 34: D187-D191. PMID: 16381842
    • (2006) Nucleic Acids Res , vol.34 , pp. D187-D191
    • Wu, C.H.1    Apweiler, R.2    Bairoch, A.3    Natale, D.A.4    Barker, W.C.5    Boeckmann, B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.