Fitting two- and three-site binding models to isothermal titration calorimetric data

Methods

Volumn 76, Issue , 2015, Pages 124-136

  Brautigam, Chad A ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

Author keywords

Analytical ultracentrifugation; Isotherm analysis; Isothermal titration calorimetry; Three site binding; Treponemal lipoproteins; Two site binding

Indexed keywords

ARTICLE; BINDING SITE; ENTHALPY; ISOTHERM; ISOTHERMAL TITRATION CALORIMETRY; MOLECULAR INTERACTION; NONHUMAN; PARAMETERS; PRIORITY JOURNAL; TREPONEMA; ULTRACENTRIFUGATION; CHEMICAL STRUCTURE; CHEMISTRY; COLORIMETRY; GENETICS; HUMAN; HYDRODYNAMICS; MUTATION; PROCEDURES; THERMODYNAMICS;

BACTERIAL PROTEIN; LACTOFERRIN; LTF PROTEIN, HUMAN;

BACTERIAL PROTEINS; BINDING SITES; COLORIMETRY; HUMANS; HYDRODYNAMICS; LACTOFERRIN; MODELS, MOLECULAR; MUTATION; THERMODYNAMICS;

EID: 84925405686     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2014.11.018     Document Type: Article

References (48)

1. Wiseman T., Williston S., Brandts J.F., Lin L.N. Anal. Biochem. 1989, 179:131-137.
2. Majhi P.R., Blume A. Langmuir 2001, 17:3844-3851.
3. Vargas C., Klingler J., Keller S. Methods Mol. Biol. 2013, 1033:253-270.
4. Poncet-Legrand C., Gautier C., Cheynier V., Imberty A. J. Agric. Food Chem. 2007, 55:9235-9240.
5. Zheng Y., Dong L., Liu M., Chen A., Feng S., Wang B., et al. J. Agric. Food Chem. 2014, 62:244-250.
6. Mariana F., Buchholz F., Harms H., Yong Z., Yao J., Maskow T. J. Microbiol. Methods 2010, 82:42-48.
7. Todd M.J., Gomez J. Anal. Biochem. 2001, 296:179-187.
8. Freyer M.W., Lewis E.A. Methods Cell Biol. 2008, 84:79-113.
9. Tellinghuisen J. Anal. Biochem. 2005, 343:106-115.
10. Velazquez-campoy A., Leavitt S.A., Freire E. Methods Mol. Biol. 2004, 261:35-54.
11. Halvorsen K., Agris P.F. Anal. Biochem. 2014, 465:127-133.
12. Oda M., Nakamura H. Genes Cells 2000, 5:319-326.
13. Salim N.N., Feig A.L. Methods 2009, 47:198-205.
14. Buurma N.J., Haq I. Methods 2007, 42:162-172.
15. Bishop G.R., Ren J., Polander B.C., Jeanfreau B.D., Trent J.O., Chaires J.B. Biophys. Chem. 2007, 126:165-175.
16. Pierce M.M., Raman C.S., Nall B.T. Methods 1999, 19:213-221.
17. Peters W.B., Frasca V., Brown R.K. Comb. Chem. High Throughput Screening 2009, 12:772-790.
18. Demarse N.A., Quinn C.F., Eggett D.L., Russell D.J., Hansen L.D. Anal. Biochem. 2011, 417:247-255.
19. Houtman J.C.D., Brown P.H., Bowden B., Yamaguchi H., Appella E., Samelson L.E., et al. Protein Sci. 2007, 16:30-42.
20. Freire E., Schön A., Velazquez-Campoy A. Methods Enzymol. 2009, 455:127-155.
21. Keeler C., Poon G., Kuo I.Y., Ehrlich B.E., Hodsdon M.E. Biophys. J. 2013, 105:2843-2853.
22. Krainer G., Broecker J., Vargas C., Keller S. Anal. Biochem. 2012, 84:10715-10722.
23. Buczek P., Horvath M.P. J. Mol. Biol. 2006, 359:1217-1234.
24. Lin L.-N., Mason A.B., Woodworth R.C., Brandts J.F. Biochemistry 1993, 32:9398-9406.
25. Gorshkova I., Moore J.L., McKenney K.H., Schwarz F.P. J. Biol. Chem. 1995, 270:21679-21683.
26. Deka R.K., Brautigam C.A., Tomson F.L., Lumpkins S.B., Tomchick D.R., Machius M., et al. J. Biol. Chem. 2007, 282:5944-5958.
27. Le V.H., Buscaglia R., Chaires J.B., Lewis E.A. Anal. Biochem. 2013, 434:233-241.
28. Osawa M., Dace A., Tong K.I., Valiveti A., Ikura M., Ames J.B. J. Biol. Chem. 2005, 280:18008-18014.
29. Gustchina E., Li M., Ghirlando R., Schuck P., Louis J.M., Pierson J., et al. PLoS ONE 2013, 8:e78187.
30. Broecker J., Vargas C., Keller S. Anal. Biochem. 2011, 418:307-309.
31. MircroCal ITC Data Analysis in Origin: Tutorial Guide, Version 7.0, MicroCal 2004, LLC, Northampton, MA.
32. Brautigam C.A., Deka R.K., Ouyang Z., Machius M., Knutsen G., Tomchick D.R., et al. J. Bacteriol. 2012, 194:6771-6781.
33. Padrick S.B., Deka R.K., Chuang J.L., Wynn R.M., Chuang D.T., Norgard M.V., et al. Anal. Biochem. 2010, 407:89-103.
34. Padrick S.B., Brautigam C.A. Methods 2011, 54:39-55.
35. Keller S., Vargas C., Zhao H., Piszczek G., Brautigam C.A., Schuck P. Anal. Chem. 2012, 84:5066-5073.
36. T.H. Scheuermann, C.A. Brautigam, Methods 76 (2015) 124-136.
37. Bevington P.R., Robinson D.K. Data Reduction and Error Analysis for the Physical Sciences 1992, WCB/McGraw-Hill, Boston, MA. 2nd ed.
38. Johnson M.L. Anal. Biochem. 1992, 206:215-225.
39. Coussens N.P., Schuck P., Zhao H. J. Chem. Thermodyn. 2012, 52:95-107.
40. Tellinghuisen J. Methods Enzymol. 2004, 383:245-282.
41. Attri A.K., Minton A.P. Anal. Biochem. 2005, 346:132-138.
42. Brautigam C.A., Padrick S.B., Schuck P. PLoS ONE 2013, 8:e62694.
43. Johnson M.L., Straume M. Comments on the analysis of sedimentation equilibrium experiments. Anal. Ultracentrifugation Acquis. Interpret. Data Biol. Synth. Polym. Syst 1994, 37-65. Birkhäuser, Boston, MA. T.M. Schuster, T.M. Laue (Eds.).
44. H. Zhao, G. Piszczek, P. Schuck, Methods 76 (2015) 1-2.
45. Haridas M., Anderson B.F., Baker E.N. Acta Crystallogr. 1995, D51:629-646.
46. Freiburger L.A., Auclair K., Mittermaier A.K. ChemBioChem 2009, 10:2871-2873.
47. Leavitt S., Freire E. Curr. Opin. Struct. Biol. 2001, 11:560-566.
48. Zhao H., Schuck P. Anal. Chem. 2012, 84:9513-9519.