Gene genealogy and properties of test statistics of neutrality under population growth

Genetics

Volumn 169, Issue 3, 2005, Pages 1687-1697

  Sano, Akinori ^a   Tachida, Hidenori ^a  

^a KYUSHU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EXPECTANCY; GENEALOGY; MATHEMATICAL ANALYSIS; MATHEMATICAL AND STATISTICAL PROCEDURES; POPULATION DISTRIBUTION; POPULATION GROWTH; POPULATION MODEL; POPULATION SIZE; PRIORITY JOURNAL; SIMULATION; STATISTICAL DISTRIBUTION; STATISTICAL PARAMETERS; STATISTICS; VARIANCE;

MODELS, GENETIC; MODELS, STATISTICAL; POPULATION GROWTH; REPRODUCIBILITY OF RESULTS;

EID: 17444382277     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.104.032797     Document Type: Article

References (20)

1. DONNELLY, P., and S. TAVARÉ, 1995 Coalescent and genealogical structure under neutrality. Annu. Rev. Genet. 29: 401-421.
2. FU, X.-Y., and W.-H. LI, 1993 Statistical tests of neutrality of mutations. Genetics 133: 693-709.
3. GRIFFITHS, R. C., and S. TAVARÉ, 1994 Sampling theory for neutral alleles in a varying environment. Proc. R. Soc. Lond. Ser. B 344: 403-410.
4. HUDSON, R. R., 1990 Gene genealogies and the coalescent process, pp. 1-44 in Oxford Surveys in Evolutionary Biology, Vol. 7, edited by D. J. FUTUYMA and J. ANTONOVICS. Oxford University Press, Oxford.
5. INNAN, H., and W. STEPHAN, 2000 The coalescent in an exponentially growing metapopulation and its application to Arabidopsis thaliana. Genetics 155: 2015-2019.
6. KAPLAN, N. L., R. R. HUDSON and C. H. LANGLEY, 1989 The "hitch-hiking effect" revisited. Genetics 123: 887-899.
7. KINGMAN, J. F. C., 1982 The coalescent. Stoch. Proc. Appl. 13: 235-248.
8. MARJORAM, P., and P. DONNELLY, 1994 Pairwise comparisons of mitochondrial-DNA sequences in subdivided populations and implications for early human-evolution. Genetics 136: 673-683.
9. PLUZHNIKOV, A., A. DI RIENZO and R. R. HUDSON, 2002 Inferences about human demography based on multilocus analyses of non-coding sequences. Genetics 161: 1209-1218.
10. PRICHARD, J. K., M. T. SEIELSTAD, A. PEREZ-LEZAUN and M. W. FELDMAN, 1999 Population growth of human Y chromosomes: a study of Y chromosome microsatellites. Mol. Biol. Evol. 16: 1791-1798.
11. PURUGGANAN, M. D., and J. I. SUDDITH, 1999 Molecular population genetics of floral homeotic loci: departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana. Genetics 151: 839-848.
12. RAMOS-ONSINS, S. E., and J. ROZAS, 2002 Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 19: 2092-2100.
13. RAY, N., M. CURRAT and L. EXCOFFIER, 2003 Intra-deme molecular diversity in spatially expanding populations. Mol. Biol. Evol. 20: 76-86.
14. ROSENBERG, N. A., and A. E. HIRSH, 2003 On the use of star-shaped genealogies in inference of coalescence times. Genetics 164: 1677-1682.
15. SIMONSEN, K., L. G. A. CHURCHILL and C. F. AQUADRO, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
16. SLATKIN, M., and R. R. HUDSON, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
17. STEPHENS, J. C., J. A. SCHNEIDER, D. A. TANGUAY, J. CHOI, T. ACHARYA et al., 2001 Haplotype variation and linkage disequilibrium in 313 human genes. Science 293: 489-493.
18. STUART, A., and J. K. ORD, 1987 Standard errors, pp. 320-344 in Kendall's Advanced Theory of Statistics, Vol. I, Ed. 5. Charles Griffin & Co., London.
19. TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
20. WEISS, G., and A. VON HAESELER, 1998 Inference of population history using a likelihood approach. Genetics 149: 1539-1546.