메뉴 건너뛰기




Volumn 100, Issue , 2015, Pages 26-38

Can one hear the shape of a population history?

Author keywords

Coalescent; Estimation; Population size

Indexed keywords

COALESCENCE; DEMOGRAPHIC HISTORY; POPULATION ESTIMATION; POPULATION GENETICS; POPULATION SIZE;

EID: 84920178681     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2014.12.002     Document Type: Article
Times cited : (26)

References (34)
  • 1
    • 84908206474 scopus 로고    scopus 로고
    • Descartes' rule of signs and the identifiability of population demographic models from genomic variation data
    • Bhaskar A., Song Y.S. Descartes' rule of signs and the identifiability of population demographic models from genomic variation data. Ann. Statist. 2014, 42(6):2469-2493.
    • (2014) Ann. Statist. , vol.42 , Issue.6 , pp. 2469-2493
    • Bhaskar, A.1    Song, Y.S.2
  • 2
    • 84920140517 scopus 로고    scopus 로고
    • Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data
    • Preprint.
    • Bhaskar, A., Wang, Y.X.R., Song, Y.S., Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data, 2014. Preprint. http://biorxiv.org/content/early/2014/06/28/006742.1.
    • (2014)
    • Bhaskar, A.1    Wang, Y.X.R.2    Song, Y.S.3
  • 3
    • 54349112314 scopus 로고    scopus 로고
    • Model selection for Poisson processes
    • Inst. Math. Statist., Beachwood, OH, Asymptotics: Particles, Processes and Inverse Problems
    • Birgé L. Model selection for Poisson processes. IMS Lecture Notes Monogr. Ser. 2007, vol. 55:32-64. Inst. Math. Statist., Beachwood, OH.
    • (2007) IMS Lecture Notes Monogr. Ser. , vol.55 , pp. 32-64
    • Birgé, L.1
  • 5
    • 33745584062 scopus 로고    scopus 로고
    • Confidence bands for hazard rates under random censorship
    • Cheng M.-Y., Hall P., Tu D. Confidence bands for hazard rates under random censorship. Biometrika 2006, 93(2):357-366.
    • (2006) Biometrika , vol.93 , Issue.2 , pp. 357-366
    • Cheng, M.-Y.1    Hall, P.2    Tu, D.3
  • 6
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond A., Rambaut A., Shapiro B., Pybus O. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 2005, 22(5):1185-1192.
    • (2005) Mol. Biol. Evol. , vol.22 , Issue.5 , pp. 1185-1192
    • Drummond, A.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.4
  • 8
    • 0036896227 scopus 로고    scopus 로고
    • On choosing and bounding probability metrics
    • Gibbs A.L., Su F.E. On choosing and bounding probability metrics. Internat. Statist. Rev. 2002, 70(3):419-435.
    • (2002) Internat. Statist. Rev. , vol.70 , Issue.3 , pp. 419-435
    • Gibbs, A.L.1    Su, F.E.2
  • 9
    • 73449149044 scopus 로고    scopus 로고
    • Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data
    • Gutenkunst R.N., Hernandez R.D., Williamson S.H., Bustamante C.D. Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data. PLoS Genet. 2009, 5(10):e1000695.
    • (2009) PLoS Genet. , vol.5 , Issue.10 , pp. e1000695
    • Gutenkunst, R.N.1    Hernandez, R.D.2    Williamson, S.H.3    Bustamante, C.D.4
  • 10
    • 0001260350 scopus 로고
    • Effect of bias estimation on coverage accuracy of bootstrap confidence intervals for a probability density
    • Hall P. Effect of bias estimation on coverage accuracy of bootstrap confidence intervals for a probability density. Ann. Statist. 1992, 20(2):675-694.
    • (1992) Ann. Statist. , vol.20 , Issue.2 , pp. 675-694
    • Hall, P.1
  • 11
    • 84879671007 scopus 로고    scopus 로고
    • Inferring demographic history from a spectrum of shared haplotype lengths
    • Harris K., Nielsen R. Inferring demographic history from a spectrum of shared haplotype lengths. PLoS Genet. 2013, 9(6):e1003521.
    • (2013) PLoS Genet. , vol.9 , Issue.6 , pp. e1003521
    • Harris, K.1    Nielsen, R.2
  • 12
    • 60549111699 scopus 로고    scopus 로고
    • Bayesian inference of population size history from multiple loci
    • Heled J., Drummond A. Bayesian inference of population size history from multiple loci. BMC Evol. Biol. 2008, 8(1):289.
    • (2008) BMC Evol. Biol. , vol.8 , Issue.1 , pp. 289
    • Heled, J.1    Drummond, A.2
  • 13
    • 0002697827 scopus 로고
    • Can one hear the shape of a drum?
    • Kac M. Can one hear the shape of a drum?. Amer. Math. Monthly 1966, 73(4):1-23.
    • (1966) Amer. Math. Monthly , vol.73 , Issue.4 , pp. 1-23
    • Kac, M.1
  • 14
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman J.F.C. On the genealogy of large populations. J. Appl. Probab. 1982, 27-43.
    • (1982) J. Appl. Probab. , pp. 27-43
    • Kingman, J.F.C.1
  • 16
    • 0003411445 scopus 로고    scopus 로고
    • Statistical Models and Methods for Lifetime Data
    • Wiley-Interscience [John Wiley & Sons], Hoboken, NJ
    • Lawless J.F. Statistical Models and Methods for Lifetime Data. Wiley Series in Probability and Statistics 2003, Wiley-Interscience [John Wiley & Sons], Hoboken, NJ. second ed.
    • (2003) Wiley Series in Probability and Statistics
    • Lawless, J.F.1
  • 17
    • 79960914105 scopus 로고    scopus 로고
    • Inference of human population history from individual whole-genome sequences
    • Li H., Durbin R. Inference of human population history from individual whole-genome sequences. Nature 2011, 475:493-496.
    • (2011) Nature , vol.475 , pp. 493-496
    • Li, H.1    Durbin, R.2
  • 18
    • 84155170973 scopus 로고    scopus 로고
    • Joint analysis of demography and selection in population genetics: where do we stand and where could we go?
    • Li J., Li H., Jakobsson M., Li S., Sjödin P., Lascoux M. Joint analysis of demography and selection in population genetics: where do we stand and where could we go?. Mol. Ecol. 2012, 21(1):28-44.
    • (2012) Mol. Ecol. , vol.21 , Issue.1 , pp. 28-44
    • Li, J.1    Li, H.2    Jakobsson, M.3    Li, S.4    Sjödin, P.5    Lascoux, M.6
  • 19
    • 79955476379 scopus 로고    scopus 로고
    • Non-equilibrium allele frequency spectra via spectral methods
    • Lukić S., Hey J., Chen K. Non-equilibrium allele frequency spectra via spectral methods. Theor. Popul. Biol. 2011, 79(4):203-219.
    • (2011) Theor. Popul. Biol. , vol.79 , Issue.4 , pp. 203-219
    • Lukić, S.1    Hey, J.2    Chen, K.3
  • 20
    • 31344468046 scopus 로고    scopus 로고
    • Approximating the coalescent with recombination
    • McVean G.A., Cardin N.J. Approximating the coalescent with recombination. Philos. Trans. R. Soc. B 2005, 360(1459):1387-1393.
    • (2005) Philos. Trans. R. Soc. B , vol.360 , Issue.1459 , pp. 1387-1393
    • McVean, G.A.1    Cardin, N.J.2
  • 21
    • 41149157336 scopus 로고    scopus 로고
    • Can one learn history from the allelic spectrum?
    • Myers S., Fefferman C., Patterson N. Can one learn history from the allelic spectrum?. Theor. Popul. Biol. 2008, 73(3):342-348.
    • (2008) Theor. Popul. Biol. , vol.73 , Issue.3 , pp. 342-348
    • Myers, S.1    Fefferman, C.2    Patterson, N.3
  • 22
    • 0033965571 scopus 로고    scopus 로고
    • Estimation of population parameters and recombination rates from single nucleotide polymorphisms
    • Nielsen R. Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 2000, 154(2):931-942.
    • (2000) Genetics , vol.154 , Issue.2 , pp. 931-942
    • Nielsen, R.1
  • 23
    • 84868450328 scopus 로고    scopus 로고
    • Length distributions of identity by descent reveal fine-scale demographic history
    • Palamara P.F., Lencz T., Darvasi A., Pe'er I. Length distributions of identity by descent reveal fine-scale demographic history. Am. J. Hum. Genet. 2012, 91(5):809-822.
    • (2012) Am. J. Hum. Genet. , vol.91 , Issue.5 , pp. 809-822
    • Palamara, P.F.1    Lencz, T.2    Darvasi, A.3    Pe'er, I.4
  • 24
    • 0037709670 scopus 로고    scopus 로고
    • Adaptive estimation of the intensity of inhomogeneous Poisson processes via concentration inequalities
    • Reynaud-Bouret P. Adaptive estimation of the intensity of inhomogeneous Poisson processes via concentration inequalities. Probab. Theory Related Fields 2003, 126(1):103-153.
    • (2003) Probab. Theory Related Fields , vol.126 , Issue.1 , pp. 103-153
    • Reynaud-Bouret, P.1
  • 25
    • 0003110711 scopus 로고
    • Estimation of the log survivor function and hazard function
    • Rice J., Rosenblatt M. Estimation of the log survivor function and hazard function. Sankhyā Ser. A 1976, 38(1):60-78.
    • (1976) Sankhyā Ser. A , vol.38 , Issue.1 , pp. 60-78
    • Rice, J.1    Rosenblatt, M.2
  • 26
    • 0040829297 scopus 로고
    • Large sample estimates and uniform confidence bounds for the failure rate function based on a naive estimator
    • Sethuraman J., Singpurwalla N.D. Large sample estimates and uniform confidence bounds for the failure rate function based on a naive estimator. Ann. Statist. 1981, 9(3):628-632.
    • (1981) Ann. Statist. , vol.9 , Issue.3 , pp. 628-632
    • Sethuraman, J.1    Singpurwalla, N.D.2
  • 27
    • 84879621036 scopus 로고    scopus 로고
    • Estimating variable effective population sizes from multiple genomes: a sequentially Markov conditional sampling distribution approach
    • Sheehan S., Harris K., Song Y.S. Estimating variable effective population sizes from multiple genomes: a sequentially Markov conditional sampling distribution approach. Genetics 2013, 194:647-662.
    • (2013) Genetics , vol.194 , pp. 647-662
    • Sheehan, S.1    Harris, K.2    Song, Y.S.3
  • 29
    • 84920139790 scopus 로고    scopus 로고
    • DiCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals
    • Tataru P., Nirody J.A., Song Y.S. diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals. Bioinformatics 2014, 30(23):3430-3431.
    • (2014) Bioinformatics , vol.30 , Issue.23 , pp. 3430-3431
    • Tataru, P.1    Nirody, J.A.2    Song, Y.S.3
  • 30
    • 27144461017 scopus 로고    scopus 로고
    • Ancestral inference in population genetics
    • Springer, Berlin, Lectures on Probability Theory and Statistics
    • Tavaré S. Ancestral inference in population genetics. Lecture Notes in Math. 2004, vol. 1837:1-188. Springer, Berlin.
    • (2004) Lecture Notes in Math. , vol.1837 , pp. 1-188
    • Tavaré, S.1
  • 32
    • 33745632904 scopus 로고    scopus 로고
    • Smoothing hazard rates
    • Wang J.-L. Smoothing hazard rates. Encyclopedia Biostat. 2005, 7:4986-4997.
    • (2005) Encyclopedia Biostat. , vol.7 , pp. 4986-4997
    • Wang, J.-L.1
  • 33
    • 65349084276 scopus 로고    scopus 로고
    • Multiscale Poisson intensity and density estimation
    • Willett R.M., Nowak R.D. Multiscale Poisson intensity and density estimation. IEEE Trans. Inform. Theory 2007, 53(9):3171-3187.
    • (2007) IEEE Trans. Inform. Theory , vol.53 , Issue.9 , pp. 3171-3187
    • Willett, R.M.1    Nowak, R.D.2
  • 34
    • 0001218245 scopus 로고
    • Nonparametric inference for rates with censored survival data
    • Yandell B.S. Nonparametric inference for rates with censored survival data. Ann. Statist. 1983, 11(4):1119-1135.
    • (1983) Ann. Statist. , vol.11 , Issue.4 , pp. 1119-1135
    • Yandell, B.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.